Experiment setATCH217 for Dickeya dianthicola 67-19

Compare to:

M9+glycerol

200 most important genes:

  gene name fitness t score description  
HGI48_RS05535 -3.3 -1.5 preprotein translocase subunit YajC compare
HGI48_RS15185 -3.3 -2.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
HGI48_RS12925 -3.0 -7.6 quinone-dependent dihydroorotate dehydrogenase compare
HGI48_RS06120 -2.4 -3.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HGI48_RS13235 -2.4 -8.0 dihydroorotase compare
HGI48_RS14305 -2.4 -2.3 NADH-quinone oxidoreductase subunit B compare
HGI48_RS18340 -2.4 -4.1 homoserine kinase compare
HGI48_RS00685 -2.4 -4.1 nucleoid occlusion factor SlmA compare
HGI48_RS15190 -2.3 -5.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
HGI48_RS12580 -2.3 -6.6 orotidine-5'-phosphate decarboxylase compare
HGI48_RS09740 -2.2 -4.3 histidinol-phosphate transaminase compare
HGI48_RS02575 -2.2 -7.2 heavy metal translocating P-type ATPase compare
HGI48_RS18110 -2.2 -2.3 thiamine ABC transporter ATP-binding protein ThiQ compare
HGI48_RS01215 -2.2 -8.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HGI48_RS18400 -2.0 -6.4 phosphoglycerate dehydrogenase compare
HGI48_RS01210 -2.0 -8.4 phosphoribosylamine--glycine ligase compare
HGI48_RS18520 -2.0 -1.3 adenylosuccinate synthase compare
HGI48_RS18075 -1.9 -2.4 siderophore-interacting protein compare
HGI48_RS06070 -1.9 -5.2 phosphoribosylformylglycinamidine cyclo-ligase compare
HGI48_RS20295 -1.9 -7.7 dihydroxy-acid dehydratase compare
HGI48_RS21235 -1.9 -5.9 nitrogen regulation protein NR(I) compare
HGI48_RS18060 -1.9 -7.7 3-isopropylmalate dehydrogenase compare
HGI48_RS08365 -1.9 -3.5 DNA sulfur modification protein DndE compare
HGI48_RS01900 -1.9 -8.9 aspartate carbamoyltransferase compare
HGI48_RS18070 -1.9 -4.5 3-isopropylmalate dehydratase small subunit compare
HGI48_RS14270 -1.9 -1.9 NADH-quinone oxidoreductase subunit J compare
HGI48_RS18055 -1.8 -10.1 2-isopropylmalate synthase compare
HGI48_RS01555 -1.8 -6.6 glutamate synthase small subunit compare
HGI48_RS01560 -1.8 -11.9 glutamate synthase large subunit compare
HGI48_RS14405 -1.8 -9.9 amidophosphoribosyltransferase compare
HGI48_RS19815 -1.8 -2.5 glycerol-3-phosphate dehydrogenase compare
HGI48_RS20270 -1.8 -8.7 ketol-acid reductoisomerase compare
HGI48_RS00850 -1.7 -7.8 phosphoenolpyruvate carboxylase compare
HGI48_RS10140 -1.7 -3.1 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HGI48_RS18065 -1.7 -7.3 3-isopropylmalate dehydratase large subunit compare
HGI48_RS19100 -1.7 -7.3 glucose-6-phosphate isomerase compare
HGI48_RS15805 -1.7 -2.4 pyridoxine 5'-phosphate synthase compare
HGI48_RS09090 -1.7 -2.5 CopG family ribbon-helix-helix protein compare
HGI48_RS08375 -1.7 -10.6 DNA phosphorothioation system sulfurtransferase DndC compare
HGI48_RS14285 -1.6 -2.2 NADH-quinone oxidoreductase subunit NuoG compare
HGI48_RS18240 -1.6 -9.1 carbamoyl-phosphate synthase large subunit compare
HGI48_RS15750 -1.6 -11.3 phosphoribosylformylglycinamidine synthase compare
HGI48_RS14035 -1.6 -2.2 LD-carboxypeptidase compare
HGI48_RS12630 -1.6 -2.0 pyridoxamine 5'-phosphate oxidase compare
HGI48_RS06440 -1.6 -1.9 YbfA family protein compare
HGI48_RS02370 -1.6 -3.4 5-formyltetrahydrofolate cyclo-ligase compare
HGI48_RS18245 -1.6 -5.9 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HGI48_RS20045 -1.6 -2.8 tyrosine recombinase XerC compare
HGI48_RS14300 -1.6 -2.3 NADH-quinone oxidoreductase subunit C/D compare
HGI48_RS00870 -1.5 -3.9 acetylornithine deacetylase compare
HGI48_RS18510 -1.5 -8.8 class 1 fructose-bisphosphatase compare
HGI48_RS00680 -1.5 -2.0 orotate phosphoribosyltransferase compare
HGI48_RS06475 -1.5 -1.4 citrate synthase compare
HGI48_RS00515 -1.5 -3.9 LuxR family transcriptional regulator compare
HGI48_RS00355 -1.5 -7.4 argininosuccinate synthase compare
HGI48_RS03655 -1.5 -1.8 MarR family transcriptional regulator compare
HGI48_RS10460 -1.5 -4.7 tryptophan synthase subunit alpha compare
HGI48_RS10465 -1.4 -6.6 tryptophan synthase subunit beta compare
HGI48_RS04020 -1.4 -3.6 S26 family signal peptidase compare
HGI48_RS01915 -1.4 -6.7 ornithine carbamoyltransferase compare
HGI48_RS10075 -1.4 -6.9 MAPEG family protein compare
HGI48_RS10430 -1.4 -2.2 TonB system transport protein TonB compare
HGI48_RS08000 -1.4 -2.7 type VI secretion system-associated protein TagO compare
HGI48_RS12970 -1.4 -7.2 porin compare
HGI48_RS06340 -1.4 -6.7 asparagine synthase B compare
HGI48_RS03265 -1.3 -3.1 lipoprotein NlpI compare
HGI48_RS03475 -1.3 -3.2 winged helix-turn-helix transcriptional regulator compare
HGI48_RS05260 -1.3 -1.1 transposase compare
HGI48_RS14260 -1.3 -2.5 NADH-quinone oxidoreductase subunit L compare
HGI48_RS14100 -1.3 -2.1 nitrate ABC transporter permease compare
HGI48_RS00875 -1.3 -4.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
HGI48_RS01445 -1.3 -2.1 RNA polymerase factor sigma-54 compare
HGI48_RS08380 -1.3 -4.4 DNA sulfur modification protein DndB compare
HGI48_RS08740 -1.2 -2.4 ABC transporter ATP-binding protein compare
HGI48_RS19055 -1.2 -1.5 elongation factor P--(R)-beta-lysine ligase compare
HGI48_RS08775 -1.2 -2.9 ABC transporter ATP-binding protein compare
HGI48_RS13045 -1.2 -2.1 NAD-dependent protein deacylase compare
HGI48_RS12670 -1.2 -3.5 Grx4 family monothiol glutaredoxin compare
HGI48_RS08370 -1.2 -4.9 DNA sulfur modification protein DndD compare
HGI48_RS08730 -1.2 -6.3 iron ABC transporter substrate-binding protein compare
HGI48_RS10170 -1.2 -2.2 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HGI48_RS10470 -1.2 -5.2 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
HGI48_RS18335 -1.1 -2.9 threonine synthase compare
HGI48_RS13210 -1.1 -2.4 23S rRNA accumulation protein YceD compare
HGI48_RS15410 -1.1 -4.0 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
HGI48_RS04870 -1.1 -2.6 hypothetical protein compare
HGI48_RS12835 -1.1 -4.5 Fe-S cluster assembly ATPase SufC compare
HGI48_RS09730 -1.1 -0.6 imidazole glycerol phosphate synthase subunit HisH compare
HGI48_RS08605 -1.1 -2.5 DUF3168 domain-containing protein compare
HGI48_RS14615 -1.1 -3.1 iron-enterobactin ABC transporter permease compare
HGI48_RS09735 -1.1 -1.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HGI48_RS06550 -1.1 -2.1 colicin uptake protein TolR compare
HGI48_RS03440 -1.0 -1.0 site-specific tyrosine recombinase XerD compare
HGI48_RS03215 -1.0 -0.8 preprotein translocase subunit SecG compare
HGI48_RS15800 -1.0 -1.2 holo-ACP synthase compare
HGI48_RS16295 -1.0 -6.1 inner membrane protein YpjD compare
HGI48_RS17805 -1.0 -1.5 YhcH/YjgK/YiaL family protein compare
HGI48_RS17645 -1.0 -2.7 phage tail protein compare
HGI48_RS16985 -1.0 -3.0 adenylyl-sulfate kinase compare
HGI48_RS14355 -1.0 -3.2 phosphate acetyltransferase compare
HGI48_RS10410 -1.0 -5.2 cardiolipin synthase compare
HGI48_RS17750 -1.0 -2.1 ABC transporter ATP-binding protein compare
HGI48_RS09460 -1.0 -1.3 glutaredoxin, GrxA family compare
HGI48_RS00815 -1.0 -4.1 HTH-type transcriptional regulator MetR compare
HGI48_RS02385 -1.0 -4.0 phosphoserine phosphatase compare
HGI48_RS16605 -1.0 -1.5 glutamate 5-kinase compare
HGI48_RS06785 -1.0 -1.8 glycosyl transferase compare
HGI48_RS11595 -1.0 -1.6 damage-inducible protein J compare
HGI48_RS05860 -0.9 -3.6 Kef family K(+) transporter compare
HGI48_RS15855 -0.9 -5.6 L-aspartate oxidase compare
HGI48_RS14040 -0.9 -1.4 LysR family transcriptional regulator compare
HGI48_RS17485 -0.9 -3.7 diaminopimelate decarboxylase compare
HGI48_RS00965 -0.9 -1.3 YeeE/YedE family protein compare
HGI48_RS10245 -0.9 -1.3 GlsB/YeaQ/YmgE family stress response membrane protein compare
HGI48_RS08315 -0.9 -1.2 replication initiator protein A compare
HGI48_RS01715 -0.9 -3.9 tol-pal system-associated acyl-CoA thioesterase compare
HGI48_RS02075 -0.9 -2.2 hypothetical protein compare
HGI48_RS16205 -0.9 -1.5 23S ribosomal RNA compare
HGI48_RS08355 -0.9 -1.4 IS481 family transposase compare
HGI48_RS06845 -0.9 -1.6 hypothetical protein compare
HGI48_RS08965 -0.9 -0.8 hypothetical protein compare
HGI48_RS01230 -0.9 -1.3 23S ribosomal RNA compare
HGI48_RS17620 -0.9 -1.8 hypothetical protein compare
HGI48_RS00830 -0.9 -2.7 uridine phosphorylase compare
HGI48_RS13325 -0.9 -4.6 RpiB/LacA/LacB family sugar-phosphate isomerase compare
HGI48_RS04970 -0.9 -1.5 thymidylate synthase compare
HGI48_RS00880 -0.9 -1.9 acetylglutamate kinase compare
HGI48_RS10575 -0.9 -1.3 electron transport complex subunit RsxA compare
HGI48_RS09930 -0.9 -2.0 NUDIX hydrolase compare
HGI48_RS15975 -0.8 -4.3 sulfate ABC transporter ATP-binding protein compare
HGI48_RS20480 -0.8 -3.4 aquaporin family protein compare
HGI48_RS14850 -0.8 -4.0 DUF4338 domain-containing protein compare
HGI48_RS09745 -0.8 -1.8 histidinol dehydrogenase compare
HGI48_RS19900 -0.8 -2.2 gluconate operon transcriptional repressor GntR compare
HGI48_RS11215 -0.8 -2.0 hypothetical protein compare
HGI48_RS10350 -0.8 -2.6 two-component system response regulator RssB compare
HGI48_RS18125 -0.8 -1.5 acetolactate synthase small subunit compare
HGI48_RS20485 -0.8 -2.2 glycerol kinase GlpK compare
HGI48_RS01150 -0.8 -2.3 thiazole synthase compare
HGI48_RS08735 -0.8 -4.0 iron ABC transporter permease compare
HGI48_RS21655 -0.8 -1.1 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
HGI48_RS06280 -0.8 -1.7 CNNM family magnesium/cobalt transport protein CorC compare
HGI48_RS00885 -0.8 -2.8 argininosuccinate lyase compare
HGI48_RS00395 -0.8 -1.9 VfmB protein compare
HGI48_RS08710 -0.8 -2.3 molybdenum cofactor biosynthesis protein B compare
HGI48_RS04450 -0.8 -2.8 cysteine synthase A compare
HGI48_RS10885 -0.8 -2.2 superoxide dismutase family protein compare
HGI48_RS16250 -0.8 -3.5 bifunctional chorismate mutase/prephenate dehydratase compare
HGI48_RS09520 -0.8 -3.0 arginine ABC transporter permease ArtQ compare
HGI48_RS03135 -0.8 -1.1 malate dehydrogenase compare
HGI48_RS06700 -0.8 -2.9 iron-sulfur cluster carrier protein ApbC compare
HGI48_RS07650 -0.8 -1.4 hypothetical protein compare
HGI48_RS14680 -0.8 -0.8 membrane protein YpdK compare
HGI48_RS05090 -0.8 -2.8 flavodoxin compare
HGI48_RS01500 -0.8 -2.5 lipid asymmetry maintenance protein MlaB compare
HGI48_RS20585 -0.8 -2.8 phage tail protein compare
HGI48_RS14280 -0.7 -1.0 NADH-quinone oxidoreductase subunit NuoH compare
HGI48_RS10995 -0.7 -1.6 IS21 family transposase compare
HGI48_RS01145 -0.7 -4.2 2-iminoacetate synthase ThiH compare
HGI48_RS00620 -0.7 -1.6 isoaspartyl peptidase/L-asparaginase compare
HGI48_RS09390 -0.7 -3.7 DUF418 family protein compare
HGI48_RS15695 -0.7 -2.0 3-phenylpropionate MFS transporter compare
HGI48_RS08580 -0.7 -1.8 type VI secretion system tip protein VgrG compare
HGI48_RS04690 -0.7 -1.7 CcdB family protein compare
HGI48_RS11530 -0.7 -1.7 tRNA 2-thiouridine(34) synthase MnmA compare
HGI48_RS01505 -0.7 -2.2 BolA family iron metabolism protein IbaG compare
HGI48_RS12020 -0.7 -2.6 LysR family transcriptional regulator compare
HGI48_RS18345 -0.7 -4.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HGI48_RS17545 -0.7 -1.7 envelope stress response protein PspG compare
HGI48_RS03585 -0.7 -2.2 hypothetical protein compare
HGI48_RS18865 -0.7 -2.2 glycoside hydrolase family protein compare
HGI48_RS17770 -0.7 -1.1 DeoR/GlpR transcriptional regulator compare
HGI48_RS19230 -0.7 -1.8 Trk system potassium transporter TrkA compare
HGI48_RS11905 -0.7 -1.4 transposase compare
HGI48_RS04905 -0.7 -3.2 oxidative damage protection protein compare
HGI48_RS05680 -0.7 -2.7 trigger factor compare
HGI48_RS15530 -0.7 -1.2 glutamine-hydrolyzing GMP synthase compare
HGI48_RS14110 -0.7 -2.6 nitrate- and nitrite sensing domain-containing protein compare
HGI48_RS09715 -0.7 -1.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HGI48_RS03190 -0.7 -1.5 ribosome assembly RNA-binding protein YhbY compare
HGI48_RS16600 -0.7 -3.0 glutamate-5-semialdehyde dehydrogenase compare
HGI48_RS07395 -0.7 -3.2 malate/lactate/ureidoglycolate dehydrogenase compare
HGI48_RS17015 -0.7 -3.8 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
HGI48_RS07570 -0.7 -2.1 iron ABC transporter permease compare
HGI48_RS17765 -0.7 -1.9 TIGR00730 family Rossman fold protein compare
HGI48_RS04025 -0.7 -1.6 DUF2840 domain-containing protein compare
HGI48_RS07385 -0.7 -2.5 ABC transporter ATP-binding protein compare
HGI48_RS21590 -0.7 -2.7 ABC transporter permease subunit compare
HGI48_RS12305 -0.7 -1.3 sodium-potassium/proton antiporter ChaA compare
HGI48_RS09920 -0.7 -2.5 helix-turn-helix transcriptional regulator compare
HGI48_RS00165 -0.7 -2.3 valine--pyruvate transaminase compare
HGI48_RS01135 -0.7 -2.4 heavy metal response regulator transcription factor compare
HGI48_RS17000 -0.7 -2.0 uroporphyrinogen-III C-methyltransferase compare
HGI48_RS11085 -0.7 -2.4 YceI family protein compare
HGI48_RS16360 -0.7 -2.1 nicotinamide-nucleotide amidase compare
HGI48_RS12840 -0.7 -3.6 Fe-S cluster assembly protein SufB compare
HGI48_RS21720 -0.7 -1.3 membrane protein insertion efficiency factor YidD compare
HGI48_RS08515 -0.7 -1.9 conjugal transfer protein TrbI compare
HGI48_RS20415 -0.6 -3.5 methylenetetrahydrofolate reductase compare
HGI48_RS05000 -0.6 -3.0 amino-acid N-acetyltransferase compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola 67-19 in carbon source experiments

For carbon source Glycerol across organisms