Experiment setATCH216 for Dickeya dianthicola 67-19

Compare to:

M9+glycerol

200 most important genes:

  gene name fitness t score description  
HGI48_RS15185 -3.8 -2.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
HGI48_RS09730 -3.2 -2.9 imidazole glycerol phosphate synthase subunit HisH compare
HGI48_RS18070 -3.1 -4.8 3-isopropylmalate dehydratase small subunit compare
HGI48_RS18835 -3.0 -1.5 nitrogen fixation protein NifM compare
HGI48_RS19815 -2.9 -3.3 glycerol-3-phosphate dehydrogenase compare
HGI48_RS09735 -2.8 -3.4 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HGI48_RS09740 -2.8 -5.4 histidinol-phosphate transaminase compare
HGI48_RS06475 -2.7 -2.2 citrate synthase compare
HGI48_RS04970 -2.6 -5.6 thymidylate synthase compare
HGI48_RS13650 -2.6 -2.2 glycoside hydrolase family 104 protein compare
HGI48_RS08365 -2.6 -5.1 DNA sulfur modification protein DndE compare
HGI48_RS18400 -2.6 -8.0 phosphoglycerate dehydrogenase compare
HGI48_RS12630 -2.5 -3.0 pyridoxamine 5'-phosphate oxidase compare
HGI48_RS00850 -2.5 -12.6 phosphoenolpyruvate carboxylase compare
HGI48_RS17890 -2.4 -5.0 carboxylating nicotinate-nucleotide diphosphorylase compare
HGI48_RS21235 -2.4 -7.7 nitrogen regulation protein NR(I) compare
HGI48_RS12925 -2.4 -6.0 quinone-dependent dihydroorotate dehydrogenase compare
HGI48_RS12580 -2.4 -5.9 orotidine-5'-phosphate decarboxylase compare
HGI48_RS06120 -2.4 -3.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HGI48_RS01915 -2.4 -10.2 ornithine carbamoyltransferase compare
HGI48_RS01560 -2.3 -14.4 glutamate synthase large subunit compare
HGI48_RS18245 -2.3 -6.0 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HGI48_RS13235 -2.3 -8.8 dihydroorotase compare
HGI48_RS00680 -2.2 -3.3 orotate phosphoribosyltransferase compare
HGI48_RS20270 -2.2 -10.0 ketol-acid reductoisomerase compare
HGI48_RS18340 -2.2 -3.2 homoserine kinase compare
HGI48_RS15190 -2.2 -6.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
HGI48_RS18060 -2.1 -8.3 3-isopropylmalate dehydrogenase compare
HGI48_RS06070 -2.0 -6.8 phosphoribosylformylglycinamidine cyclo-ligase compare
HGI48_RS18055 -2.0 -10.0 2-isopropylmalate synthase compare
HGI48_RS01210 -2.0 -8.1 phosphoribosylamine--glycine ligase compare
HGI48_RS01555 -2.0 -7.0 glutamate synthase small subunit compare
HGI48_RS16070 -2.0 -7.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HGI48_RS10470 -1.9 -9.2 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
HGI48_RS15750 -1.9 -11.6 phosphoribosylformylglycinamidine synthase compare
HGI48_RS14405 -1.9 -8.9 amidophosphoribosyltransferase compare
HGI48_RS18065 -1.9 -7.1 3-isopropylmalate dehydratase large subunit compare
HGI48_RS00815 -1.8 -6.2 HTH-type transcriptional regulator MetR compare
HGI48_RS18520 -1.8 -2.1 adenylosuccinate synthase compare
HGI48_RS18510 -1.8 -10.3 class 1 fructose-bisphosphatase compare
HGI48_RS19100 -1.7 -6.2 glucose-6-phosphate isomerase compare
HGI48_RS01215 -1.7 -5.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HGI48_RS00355 -1.7 -7.0 argininosuccinate synthase compare
HGI48_RS20425 -1.7 -7.7 cystathionine gamma-synthase compare
HGI48_RS17770 -1.7 -1.6 DeoR/GlpR transcriptional regulator compare
HGI48_RS19155 -1.7 -7.0 homoserine O-succinyltransferase compare
HGI48_RS20295 -1.7 -6.2 dihydroxy-acid dehydratase compare
HGI48_RS01445 -1.7 -3.4 RNA polymerase factor sigma-54 compare
HGI48_RS01900 -1.6 -6.2 aspartate carbamoyltransferase compare
HGI48_RS08375 -1.6 -10.2 DNA phosphorothioation system sulfurtransferase DndC compare
HGI48_RS14270 -1.5 -1.4 NADH-quinone oxidoreductase subunit J compare
HGI48_RS00875 -1.5 -3.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
HGI48_RS12670 -1.5 -4.6 Grx4 family monothiol glutaredoxin compare
HGI48_RS10460 -1.5 -5.4 tryptophan synthase subunit alpha compare
HGI48_RS18240 -1.5 -6.9 carbamoyl-phosphate synthase large subunit compare
HGI48_RS16080 -1.4 -6.1 aspartate 1-decarboxylase compare
HGI48_RS08370 -1.4 -6.5 DNA sulfur modification protein DndD compare
HGI48_RS19570 -1.4 -6.5 aspartate aminotransferase family protein compare
HGI48_RS09715 -1.4 -1.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HGI48_RS17805 -1.4 -1.8 YhcH/YjgK/YiaL family protein compare
HGI48_RS20735 -1.4 -3.3 aspartate 1-decarboxylase autocleavage activator PanM compare
HGI48_RS14260 -1.4 -1.9 NADH-quinone oxidoreductase subunit L compare
HGI48_RS14305 -1.3 -2.0 NADH-quinone oxidoreductase subunit B compare
HGI48_RS19055 -1.3 -1.6 elongation factor P--(R)-beta-lysine ligase compare
HGI48_RS16075 -1.3 -3.6 pantoate--beta-alanine ligase compare
HGI48_RS12990 -1.3 -5.6 aspartate/tyrosine/aromatic aminotransferase compare
HGI48_RS01710 -1.3 -6.2 cystathionine beta-lyase compare
HGI48_RS08380 -1.3 -4.0 DNA sulfur modification protein DndB compare
HGI48_RS05640 -1.3 -3.8 protoheme IX farnesyltransferase compare
HGI48_RS01435 -1.3 -3.1 PTS IIA-like nitrogen regulatory protein PtsN compare
HGI48_RS17485 -1.3 -4.8 diaminopimelate decarboxylase compare
HGI48_RS10465 -1.3 -6.8 tryptophan synthase subunit beta compare
HGI48_RS01505 -1.3 -3.5 BolA family iron metabolism protein IbaG compare
HGI48_RS16680 -1.3 -2.1 acireductone dioxygenase compare
HGI48_RS03440 -1.3 -1.5 site-specific tyrosine recombinase XerD compare
HGI48_RS05650 -1.3 -2.4 cytochrome o ubiquinol oxidase subunit III compare
HGI48_RS15535 -1.2 -6.6 IMP dehydrogenase compare
HGI48_RS02010 -1.2 -2.6 AlpA family transcriptional regulator compare
HGI48_RS09745 -1.2 -2.7 histidinol dehydrogenase compare
HGI48_RS16250 -1.2 -5.5 bifunctional chorismate mutase/prephenate dehydratase compare
HGI48_RS09600 -1.2 -3.2 thioredoxin-disulfide reductase compare
HGI48_RS04245 -1.2 -1.5 DUF4755 domain-containing protein compare
HGI48_RS21430 -1.2 -1.9 F0F1 ATP synthase subunit epsilon compare
HGI48_RS09750 -1.2 -2.1 ATP phosphoribosyltransferase compare
HGI48_RS08740 -1.2 -2.1 ABC transporter ATP-binding protein compare
HGI48_RS14545 -1.2 -4.4 phosphohistidine phosphatase SixA compare
HGI48_RS10430 -1.2 -2.4 TonB system transport protein TonB compare
HGI48_RS21390 -1.2 -4.2 F0F1 ATP synthase subunit I compare
HGI48_RS17010 -1.1 -6.0 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
HGI48_RS02990 -1.1 -3.2 hypothetical protein compare
HGI48_RS20480 -1.1 -5.8 aquaporin family protein compare
HGI48_RS01050 -1.1 -1.6 tRNA-Thr compare
HGI48_RS05700 -1.1 -1.8 DNA-binding protein HU-beta compare
HGI48_RS17015 -1.1 -5.6 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
HGI48_RS10075 -1.1 -5.2 MAPEG family protein compare
HGI48_RS06595 -1.1 -4.2 quinolinate synthase NadA compare
HGI48_RS03265 -1.1 -3.2 lipoprotein NlpI compare
HGI48_RS17235 -1.1 -2.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
HGI48_RS18335 -1.1 -2.8 threonine synthase compare
HGI48_RS06775 -1.1 -1.3 glycosyltransferase family 2 protein compare
HGI48_RS01895 -1.1 -2.8 aspartate carbamoyltransferase regulatory subunit compare
HGI48_RS02575 -1.1 -4.6 heavy metal translocating P-type ATPase compare
HGI48_RS14435 -1.1 -1.7 tRNA pseudouridine(38-40) synthase TruA compare
HGI48_RS02385 -1.1 -3.8 phosphoserine phosphatase compare
HGI48_RS13120 -1.1 -2.1 phosphotransferase compare
HGI48_RS17000 -1.1 -3.7 uroporphyrinogen-III C-methyltransferase compare
HGI48_RS08735 -1.0 -5.3 iron ABC transporter permease compare
HGI48_RS20035 -1.0 -3.6 DNA helicase II compare
HGI48_RS15610 -1.0 -4.4 aminopeptidase PepB compare
HGI48_RS00885 -1.0 -3.8 argininosuccinate lyase compare
HGI48_RS01845 -1.0 -2.4 ABC transporter permease compare
HGI48_RS05000 -1.0 -4.8 amino-acid N-acetyltransferase compare
HGI48_RS06280 -1.0 -2.3 CNNM family magnesium/cobalt transport protein CorC compare
HGI48_RS08730 -1.0 -5.1 iron ABC transporter substrate-binding protein compare
HGI48_RS06340 -1.0 -4.1 asparagine synthase B compare
HGI48_RS15855 -1.0 -5.5 L-aspartate oxidase compare
HGI48_RS10485 -1.0 -4.3 anthranilate synthase component 1 compare
HGI48_RS06550 -1.0 -1.8 colicin uptake protein TolR compare
HGI48_RS10555 -1.0 -3.2 electron transport complex subunit RsxG compare
HGI48_RS10475 -1.0 -2.7 anthranilate phosphoribosyltransferase compare
HGI48_RS14285 -1.0 -1.0 NADH-quinone oxidoreductase subunit NuoG compare
HGI48_RS00530 -1.0 -3.1 hypothetical protein compare
HGI48_RS16050 -0.9 -1.2 RNA polymerase-binding protein DksA compare
HGI48_RS20555 -0.9 -2.0 phage tail assembly chaperone compare
HGI48_RS18050 -0.9 -1.9 leu operon leader peptide compare
HGI48_RS18345 -0.9 -4.2 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HGI48_RS13280 -0.9 -6.4 glucan biosynthesis protein G compare
HGI48_RS10500 -0.9 -4.3 23S rRNA pseudouridine(2605) synthase RluB compare
HGI48_RS00870 -0.9 -2.5 acetylornithine deacetylase compare
HGI48_RS03585 -0.9 -2.5 hypothetical protein compare
HGI48_RS10480 -0.9 -2.5 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein compare
HGI48_RS04440 -0.9 -3.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
HGI48_RS04025 -0.9 -1.7 DUF2840 domain-containing protein compare
HGI48_RS12920 -0.9 -1.5 cell division protein ZapC compare
HGI48_RS13210 -0.8 -2.0 23S rRNA accumulation protein YceD compare
HGI48_RS20045 -0.8 -1.9 tyrosine recombinase XerC compare
HGI48_RS12055 -0.8 -2.7 carboxy terminal-processing peptidase compare
HGI48_RS11530 -0.8 -1.5 tRNA 2-thiouridine(34) synthase MnmA compare
HGI48_RS17545 -0.8 -2.2 envelope stress response protein PspG compare
HGI48_RS00990 -0.8 -3.5 Trk system potassium transporter TrkH compare
HGI48_RS10995 -0.8 -1.4 IS21 family transposase compare
HGI48_RS09245 -0.8 -3.9 elongation factor P-like protein YeiP compare
HGI48_RS16205 -0.8 -1.2 23S ribosomal RNA compare
HGI48_RS07580 -0.8 -2.9 ABC transporter ATP-binding protein compare
HGI48_RS05780 -0.8 -1.5 50S ribosomal protein L36 compare
HGI48_RS09605 -0.8 -3.3 leucine-responsive transcriptional regulator Lrp compare
HGI48_RS13275 -0.8 -6.2 glucans biosynthesis glucosyltransferase MdoH compare
HGI48_RS19900 -0.8 -2.4 gluconate operon transcriptional repressor GntR compare
HGI48_RS16750 -0.8 -0.8 oxalurate catabolism protein HpxX compare
HGI48_RS10700 -0.8 -1.7 mannosyl-3-phosphoglycerate phosphatase-related protein compare
HGI48_RS16355 -0.8 -1.8 recombinase RecA compare
HGI48_RS20290 -0.8 -5.0 threonine ammonia-lyase, biosynthetic compare
HGI48_RS18125 -0.8 -1.4 acetolactate synthase small subunit compare
HGI48_RS18845 -0.8 -1.0 nitrogen fixation protein NifW compare
HGI48_RS12410 -0.8 -2.8 tRNA 2-thiocytidine(32) synthetase TtcA compare
HGI48_RS01545 -0.7 -4.1 stringent starvation protein A compare
HGI48_RS20250 -0.7 -1.1 peptidylprolyl isomerase compare
HGI48_RS10410 -0.7 -4.3 cardiolipin synthase compare
HGI48_RS00785 -0.7 -1.7 rhodanese-like domain-containing protein compare
HGI48_RS08710 -0.7 -1.6 molybdenum cofactor biosynthesis protein B compare
HGI48_RS11905 -0.7 -1.9 transposase compare
HGI48_RS16995 -0.7 -3.5 sulfate adenylyltransferase subunit CysD compare
HGI48_RS18180 -0.7 -2.2 co-chaperone DjlA compare
HGI48_RS16600 -0.7 -2.7 glutamate-5-semialdehyde dehydrogenase compare
HGI48_RS15930 -0.7 -1.4 TSUP family transporter compare
HGI48_RS16170 -0.7 -1.8 ribonuclease HI compare
HGI48_RS01635 -0.7 -2.3 outer membrane channel protein TolC compare
HGI48_RS00265 -0.7 -1.5 mannitol-1-phosphate 5-dehydrogenase compare
HGI48_RS05105 -0.7 -3.6 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
HGI48_RS18410 -0.7 -1.5 hypothetical protein compare
HGI48_RS04450 -0.7 -2.5 cysteine synthase A compare
HGI48_RS03190 -0.7 -1.7 ribosome assembly RNA-binding protein YhbY compare
HGI48_RS04905 -0.7 -3.1 oxidative damage protection protein compare
HGI48_RS15545 -0.7 -4.6 M4 family metallopeptidase compare
HGI48_RS09630 -0.7 -2.0 Tat proofreading chaperone DmsD compare
HGI48_RS04020 -0.7 -2.5 S26 family signal peptidase compare
HGI48_RS20485 -0.7 -2.9 glycerol kinase GlpK compare
HGI48_RS04725 -0.7 -1.5 HTH domain-containing protein compare
HGI48_RS08300 -0.7 -1.8 CcdB family protein compare
HGI48_RS10335 -0.7 -2.6 formyltetrahydrofolate deformylase compare
HGI48_RS15615 -0.7 -1.4 Fe-S cluster assembly protein IscX compare
HGI48_RS02580 -0.7 -2.0 Cd(II)/Pb(II)-responsive transcriptional regulator compare
HGI48_RS15670 -0.7 -2.1 iron ABC transporter permease compare
HGI48_RS07350 -0.7 -1.9 4Fe-4S binding protein compare
HGI48_RS06495 -0.7 -3.0 succinate dehydrogenase iron-sulfur subunit compare
HGI48_RS21700 -0.7 -3.3 DNA damage-inducible protein D compare
HGI48_RS06480 -0.6 -1.6 succinate dehydrogenase cytochrome b556 subunit compare
HGI48_RS21640 -0.6 -2.0 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
HGI48_RS11490 -0.6 -2.5 DNA-binding transcriptional regulator KdgR compare
HGI48_RS10885 -0.6 -1.7 superoxide dismutase family protein compare
HGI48_RS15985 -0.6 -2.4 sulfate ABC transporter permease subunit CysT compare
HGI48_RS05890 -0.6 -3.6 copper-exporting P-type ATPase CopA compare
HGI48_RS20175 -0.6 -2.7 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase compare
HGI48_RS19785 -0.6 -0.8 Fe-S biogenesis protein NfuA compare
HGI48_RS06065 -0.6 -1.8 phosphoribosylglycinamide formyltransferase compare
HGI48_RS18730 -0.6 -1.8 amino acid ABC transporter ATP-binding protein compare
HGI48_RS21350 -0.6 -2.8 two-component system sensor histidine kinase QseC compare
HGI48_RS08150 -0.6 -1.6 flavin reductase family protein compare
HGI48_RS08675 -0.6 -3.0 biotin synthase BioB compare
HGI48_RS21220 -0.6 -2.4 ribosome-dependent GTPase TypA compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola 67-19 in carbon source experiments

For carbon source Glycerol across organisms