Experiment setATCH215 for Dickeya dianthicola 67-19

Compare to:

M9+glycerol

200 most important genes:

  gene name fitness t score description  
HGI48_RS09740 -3.2 -5.5 histidinol-phosphate transaminase compare
HGI48_RS14270 -2.9 -2.5 NADH-quinone oxidoreductase subunit J compare
HGI48_RS12925 -2.9 -7.5 quinone-dependent dihydroorotate dehydrogenase compare
HGI48_RS10430 -2.7 -4.3 TonB system transport protein TonB compare
HGI48_RS01410 -2.6 -2.6 ribosome-associated protein compare
HGI48_RS18070 -2.5 -6.0 3-isopropylmalate dehydratase small subunit compare
HGI48_RS21235 -2.4 -8.4 nitrogen regulation protein NR(I) compare
HGI48_RS00680 -2.3 -2.8 orotate phosphoribosyltransferase compare
HGI48_RS11530 -2.2 -2.8 tRNA 2-thiouridine(34) synthase MnmA compare
HGI48_RS15190 -2.2 -4.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
HGI48_RS18400 -2.2 -6.0 phosphoglycerate dehydrogenase compare
HGI48_RS06120 -2.2 -4.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HGI48_RS01560 -2.2 -13.9 glutamate synthase large subunit compare
HGI48_RS01555 -2.1 -8.0 glutamate synthase small subunit compare
HGI48_RS01900 -2.1 -7.8 aspartate carbamoyltransferase compare
HGI48_RS00850 -2.1 -10.3 phosphoenolpyruvate carboxylase compare
HGI48_RS20270 -2.0 -9.2 ketol-acid reductoisomerase compare
HGI48_RS19505 -2.0 -3.0 phosphotransferase compare
HGI48_RS01210 -2.0 -8.8 phosphoribosylamine--glycine ligase compare
HGI48_RS02775 -2.0 -2.3 DUF883 domain-containing protein compare
HGI48_RS18245 -2.0 -5.9 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HGI48_RS16355 -2.0 -2.8 recombinase RecA compare
HGI48_RS09730 -2.0 -1.5 imidazole glycerol phosphate synthase subunit HisH compare
HGI48_RS00800 -2.0 -2.3 serine O-acetyltransferase compare
HGI48_RS17770 -1.9 -2.0 DeoR/GlpR transcriptional regulator compare
HGI48_RS13235 -1.9 -6.3 dihydroorotase compare
HGI48_RS06475 -1.9 -2.6 citrate synthase compare
HGI48_RS18520 -1.9 -1.9 adenylosuccinate synthase compare
HGI48_RS18065 -1.9 -7.5 3-isopropylmalate dehydratase large subunit compare
HGI48_RS20045 -1.9 -3.2 tyrosine recombinase XerC compare
HGI48_RS19100 -1.9 -7.7 glucose-6-phosphate isomerase compare
HGI48_RS12580 -1.8 -4.5 orotidine-5'-phosphate decarboxylase compare
HGI48_RS04970 -1.8 -3.5 thymidylate synthase compare
HGI48_RS20295 -1.8 -6.9 dihydroxy-acid dehydratase compare
HGI48_RS08365 -1.8 -2.3 DNA sulfur modification protein DndE compare
HGI48_RS18055 -1.8 -9.1 2-isopropylmalate synthase compare
HGI48_RS02575 -1.8 -5.5 heavy metal translocating P-type ATPase compare
HGI48_RS01215 -1.8 -5.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HGI48_RS18510 -1.7 -9.6 class 1 fructose-bisphosphatase compare
HGI48_RS09735 -1.7 -1.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HGI48_RS19815 -1.7 -2.7 glycerol-3-phosphate dehydrogenase compare
HGI48_RS08375 -1.6 -10.1 DNA phosphorothioation system sulfurtransferase DndC compare
HGI48_RS18060 -1.6 -5.7 3-isopropylmalate dehydrogenase compare
HGI48_RS09745 -1.6 -3.3 histidinol dehydrogenase compare
HGI48_RS01445 -1.6 -3.2 RNA polymerase factor sigma-54 compare
HGI48_RS14405 -1.6 -8.7 amidophosphoribosyltransferase compare
HGI48_RS00355 -1.6 -6.3 argininosuccinate synthase compare
HGI48_RS20250 -1.6 -1.7 peptidylprolyl isomerase compare
HGI48_RS06085 -1.6 -3.2 DnaA inactivator Hda compare
HGI48_RS06775 -1.5 -1.6 glycosyltransferase family 2 protein compare
HGI48_RS08370 -1.5 -6.6 DNA sulfur modification protein DndD compare
HGI48_RS01915 -1.5 -7.2 ornithine carbamoyltransferase compare
HGI48_RS20890 -1.5 -4.1 hypothetical protein compare
HGI48_RS12970 -1.5 -10.2 porin compare
HGI48_RS18125 -1.5 -3.2 acetolactate synthase small subunit compare
HGI48_RS15185 -1.5 -0.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
HGI48_RS06070 -1.5 -4.5 phosphoribosylformylglycinamidine cyclo-ligase compare
HGI48_RS18240 -1.5 -7.5 carbamoyl-phosphate synthase large subunit compare
HGI48_RS00880 -1.5 -3.9 acetylglutamate kinase compare
HGI48_RS09310 -1.5 -1.6 acyl carrier protein compare
HGI48_RS12630 -1.4 -1.7 pyridoxamine 5'-phosphate oxidase compare
HGI48_RS19750 -1.4 -3.2 two-component system response regulator OmpR compare
HGI48_RS17355 -1.4 -3.3 YggT family protein compare
HGI48_RS04315 -1.4 -4.8 outer membrane protein assembly factor BamE compare
HGI48_RS21470 -1.4 -2.2 acyl carrier protein compare
HGI48_RS12670 -1.4 -2.7 Grx4 family monothiol glutaredoxin compare
HGI48_RS18340 -1.4 -2.4 homoserine kinase compare
HGI48_RS19785 -1.4 -2.2 Fe-S biogenesis protein NfuA compare
HGI48_RS15750 -1.4 -9.6 phosphoribosylformylglycinamidine synthase compare
HGI48_RS10140 -1.4 -2.8 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HGI48_RS00620 -1.3 -2.6 isoaspartyl peptidase/L-asparaginase compare
HGI48_RS08380 -1.3 -4.4 DNA sulfur modification protein DndB compare
HGI48_RS17005 -1.3 -3.0 phosphoadenylyl-sulfate reductase compare
HGI48_RS20555 -1.3 -2.7 phage tail assembly chaperone compare
HGI48_RS13650 -1.3 -1.2 glycoside hydrolase family 104 protein compare
HGI48_RS17485 -1.3 -4.6 diaminopimelate decarboxylase compare
HGI48_RS18175 -1.3 -1.4 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA compare
HGI48_RS18345 -1.2 -6.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HGI48_RS09715 -1.2 -2.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HGI48_RS10460 -1.2 -3.9 tryptophan synthase subunit alpha compare
HGI48_RS03265 -1.2 -2.7 lipoprotein NlpI compare
HGI48_RS20485 -1.2 -3.4 glycerol kinase GlpK compare
HGI48_RS07085 -1.2 -2.9 conjugal transfer protein compare
HGI48_RS14355 -1.1 -2.6 phosphate acetyltransferase compare
HGI48_RS08735 -1.1 -6.3 iron ABC transporter permease compare
HGI48_RS17890 -1.1 -2.2 carboxylating nicotinate-nucleotide diphosphorylase compare
HGI48_RS18075 -1.1 -1.7 siderophore-interacting protein compare
HGI48_RS06340 -1.1 -4.2 asparagine synthase B compare
HGI48_RS00915 -1.1 -1.3 Sec-independent protein translocase subunit TatB compare
HGI48_RS15410 -1.1 -4.2 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
HGI48_RS09750 -1.1 -1.6 ATP phosphoribosyltransferase compare
HGI48_RS14545 -1.1 -3.3 phosphohistidine phosphatase SixA compare
HGI48_RS10075 -1.1 -4.6 MAPEG family protein compare
HGI48_RS18050 -1.1 -2.2 leu operon leader peptide compare
HGI48_RS02385 -1.1 -3.5 phosphoserine phosphatase compare
HGI48_RS12865 -1.1 -2.6 AI-2E family transporter YdiK compare
HGI48_RS16995 -1.1 -4.9 sulfate adenylyltransferase subunit CysD compare
HGI48_RS02580 -1.1 -2.7 Cd(II)/Pb(II)-responsive transcriptional regulator compare
HGI48_RS14305 -1.0 -1.4 NADH-quinone oxidoreductase subunit B compare
HGI48_RS10350 -1.0 -3.0 two-component system response regulator RssB compare
HGI48_RS00815 -1.0 -4.3 HTH-type transcriptional regulator MetR compare
HGI48_RS18335 -1.0 -2.8 threonine synthase compare
HGI48_RS05795 -1.0 -4.3 efflux RND transporter periplasmic adaptor subunit compare
HGI48_RS10465 -1.0 -5.7 tryptophan synthase subunit beta compare
HGI48_RS17000 -1.0 -3.4 uroporphyrinogen-III C-methyltransferase compare
HGI48_RS01505 -1.0 -2.4 BolA family iron metabolism protein IbaG compare
HGI48_RS15225 -1.0 -2.2 polyphosphate kinase 1 compare
HGI48_RS03215 -1.0 -0.8 preprotein translocase subunit SecG compare
HGI48_RS14260 -1.0 -1.4 NADH-quinone oxidoreductase subunit L compare
HGI48_RS08890 -1.0 -1.2 DNA starvation/stationary phase protection protein Dps compare
HGI48_RS05860 -1.0 -3.2 Kef family K(+) transporter compare
HGI48_RS16680 -1.0 -1.5 acireductone dioxygenase compare
HGI48_RS14615 -1.0 -1.8 iron-enterobactin ABC transporter permease compare
HGI48_RS15470 -1.0 -2.4 type II secretion system minor pseudopilin GspI compare
HGI48_RS11020 -0.9 -1.5 hypothetical protein compare
HGI48_RS02150 -0.9 -3.2 FGGY-family carbohydrate kinase compare
HGI48_RS00875 -0.9 -2.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
HGI48_RS14300 -0.9 -1.4 NADH-quinone oxidoreductase subunit C/D compare
HGI48_RS21475 -0.9 -2.4 acyl carrier protein compare
HGI48_RS20480 -0.9 -3.5 aquaporin family protein compare
HGI48_RS14850 -0.9 -3.6 DUF4338 domain-containing protein compare
HGI48_RS17790 -0.9 -2.9 dihydrodipicolinate synthase family protein compare
HGI48_RS00885 -0.9 -3.1 argininosuccinate lyase compare
HGI48_RS16205 -0.9 -0.8 23S ribosomal RNA compare
HGI48_RS16865 -0.9 -2.0 YfiM family lipoprotein compare
HGI48_RS02715 -0.9 -1.0 chorismate lyase compare
HGI48_RS01150 -0.9 -2.2 thiazole synthase compare
HGI48_RS20620 -0.9 -1.9 DUF2756 domain-containing protein compare
HGI48_RS10200 -0.9 -2.9 non-heme ferritin compare
HGI48_RS10470 -0.9 -3.8 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
HGI48_RS03655 -0.9 -1.0 MarR family transcriptional regulator compare
HGI48_RS21645 -0.9 -3.6 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
HGI48_RS21040 -0.9 -0.8 DUF1471 domain-containing protein compare
HGI48_RS08730 -0.9 -4.3 iron ABC transporter substrate-binding protein compare
HGI48_RS05390 -0.9 -1.1 alkylphosphonate utilization protein compare
HGI48_RS00515 -0.9 -2.1 LuxR family transcriptional regulator compare
HGI48_RS08440 -0.9 -2.4 P-type conjugative transfer protein TrbJ compare
HGI48_RS08160 -0.9 -1.7 DUF1869 domain-containing protein compare
HGI48_RS12355 -0.9 -2.2 LUD domain-containing protein compare
HGI48_RS11605 -0.9 -1.2 hypothetical protein compare
HGI48_RS08965 -0.9 -1.3 hypothetical protein compare
HGI48_RS05455 -0.8 -1.5 pyrimidine/purine nucleoside phosphorylase compare
HGI48_RS16820 -0.8 -1.8 L-valine transporter subunit YgaH compare
HGI48_RS10230 -0.8 -3.1 hypothetical protein compare
HGI48_RS02905 -0.8 -1.8 phage regulatory CII family protein compare
HGI48_RS07830 -0.8 -1.4 triphosphoribosyl-dephospho-CoA synthase compare
HGI48_RS09210 -0.8 -1.3 hypothetical protein compare
HGI48_RS19105 -0.8 -2.4 lysine-sensitive aspartokinase 3 compare
HGI48_RS01715 -0.8 -3.4 tol-pal system-associated acyl-CoA thioesterase compare
HGI48_RS14075 -0.8 -2.7 NAD(P)H-dependent oxidoreductase compare
HGI48_RS10170 -0.8 -1.4 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HGI48_RS04520 -0.8 -3.0 DNA oxidative demethylase AlkB compare
HGI48_RS16295 -0.8 -5.2 inner membrane protein YpjD compare
HGI48_RS18530 -0.8 -3.7 protease modulator HflC compare
HGI48_RS00990 -0.8 -2.7 Trk system potassium transporter TrkH compare
HGI48_RS20035 -0.8 -2.2 DNA helicase II compare
HGI48_RS00870 -0.8 -1.8 acetylornithine deacetylase compare
HGI48_RS08355 -0.8 -1.6 IS481 family transposase compare
HGI48_RS17010 -0.8 -4.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
HGI48_RS21655 -0.8 -1.4 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
HGI48_RS11325 -0.8 -2.5 PTS mannose transporter subunit IID compare
HGI48_RS15930 -0.8 -1.1 TSUP family transporter compare
HGI48_RS07165 -0.8 -1.7 AlpA family phage regulatory protein compare
HGI48_RS12960 -0.8 -1.5 nicotinate phosphoribosyltransferase compare
HGI48_RS00265 -0.8 -1.1 mannitol-1-phosphate 5-dehydrogenase compare
HGI48_RS08780 -0.8 -2.9 secretion protein HlyD compare
HGI48_RS15580 -0.8 -1.9 cytoskeleton protein RodZ compare
HGI48_RS00795 -0.8 -0.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
HGI48_RS07860 -0.8 -1.1 malonate decarboxylase subunit epsilon compare
HGI48_RS20170 -0.8 -4.2 ECA oligosaccharide polymerase compare
HGI48_RS01145 -0.7 -3.8 2-iminoacetate synthase ThiH compare
HGI48_RS03440 -0.7 -1.1 site-specific tyrosine recombinase XerD compare
HGI48_RS12845 -0.7 -2.2 Fe-S cluster assembly scaffold SufA compare
HGI48_RS13925 -0.7 -3.9 hypothetical protein compare
HGI48_RS17015 -0.7 -4.1 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
HGI48_RS10550 -0.7 -1.0 electron transport complex subunit E compare
HGI48_RS08150 -0.7 -1.4 flavin reductase family protein compare
HGI48_RS16250 -0.7 -3.4 bifunctional chorismate mutase/prephenate dehydratase compare
HGI48_RS13280 -0.7 -5.1 glucan biosynthesis protein G compare
HGI48_RS04905 -0.7 -3.2 oxidative damage protection protein compare
HGI48_RS15275 -0.7 -1.9 heat shock protein HspQ compare
HGI48_RS20095 -0.7 -2.8 amidohydrolase compare
HGI48_RS16450 -0.7 -1.5 GTPase compare
HGI48_RS05605 -0.7 -2.5 tRNA 4-thiouridine(8) synthase ThiI compare
HGI48_RS16750 -0.7 -1.0 oxalurate catabolism protein HpxX compare
HGI48_RS12550 -0.7 -2.0 aldo/keto reductase compare
HGI48_RS09030 -0.7 -1.2 protease inhibitor I42 family protein compare
HGI48_RS15765 -0.7 -2.9 N-acetylmuramic acid 6-phosphate etherase compare
HGI48_RS16070 -0.7 -2.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HGI48_RS14035 -0.7 -1.2 LD-carboxypeptidase compare
HGI48_RS14605 -0.7 -1.9 enterobactin transporter EntS compare
HGI48_RS06550 -0.7 -1.0 colicin uptake protein TolR compare
HGI48_RS03450 -0.7 -1.7 single-stranded-DNA-specific exonuclease RecJ compare
HGI48_RS14435 -0.7 -0.7 tRNA pseudouridine(38-40) synthase TruA compare
HGI48_RS20585 -0.7 -1.8 phage tail protein compare
HGI48_RS04775 -0.7 -1.8 nucleotidyltransferase family protein compare
HGI48_RS12545 -0.7 -2.7 exoribonuclease II compare
HGI48_RS20970 -0.7 -1.6 heat shock chaperone IbpA compare
HGI48_RS12560 -0.7 -2.8 2-keto-3-deoxygluconate transporter compare
HGI48_RS08580 -0.7 -1.6 type VI secretion system tip protein VgrG compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola 67-19 in carbon source experiments

For carbon source Glycerol across organisms