Experiment setATCH214 for Dickeya dianthicola 67-19

Compare to:

M9+glycerol

200 most important genes:

  gene name fitness t score description  
HGI48_RS16355 -3.6 -3.5 recombinase RecA compare
HGI48_RS18520 -3.4 -2.3 adenylosuccinate synthase compare
HGI48_RS20750 -3.4 -2.1 cell division ATP-binding protein FtsE compare
HGI48_RS16050 -3.0 -1.7 RNA polymerase-binding protein DksA compare
HGI48_RS09735 -2.8 -4.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HGI48_RS18070 -2.7 -7.0 3-isopropylmalate dehydratase small subunit compare
HGI48_RS08365 -2.6 -7.7 DNA sulfur modification protein DndE compare
HGI48_RS15190 -2.5 -5.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
HGI48_RS12925 -2.5 -5.6 quinone-dependent dihydroorotate dehydrogenase compare
HGI48_RS01445 -2.5 -4.0 RNA polymerase factor sigma-54 compare
HGI48_RS05535 -2.5 -1.3 preprotein translocase subunit YajC compare
HGI48_RS06475 -2.4 -2.0 citrate synthase compare
HGI48_RS06120 -2.3 -3.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HGI48_RS10375 -2.3 -5.5 YchE family NAAT transporter compare
HGI48_RS18400 -2.2 -6.5 phosphoglycerate dehydrogenase compare
HGI48_RS21235 -2.2 -6.8 nitrogen regulation protein NR(I) compare
HGI48_RS09730 -2.2 -2.5 imidazole glycerol phosphate synthase subunit HisH compare
HGI48_RS13235 -2.2 -8.5 dihydroorotase compare
HGI48_RS09740 -2.2 -4.3 histidinol-phosphate transaminase compare
HGI48_RS12580 -2.1 -4.6 orotidine-5'-phosphate decarboxylase compare
HGI48_RS03555 -2.1 -2.3 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
HGI48_RS18340 -2.1 -4.9 homoserine kinase compare
HGI48_RS15805 -2.1 -2.4 pyridoxine 5'-phosphate synthase compare
HGI48_RS01560 -2.0 -13.5 glutamate synthase large subunit compare
HGI48_RS04765 -2.0 -2.7 hypothetical protein compare
HGI48_RS18065 -2.0 -6.6 3-isopropylmalate dehydratase large subunit compare
HGI48_RS14405 -2.0 -11.2 amidophosphoribosyltransferase compare
HGI48_RS18060 -1.9 -8.2 3-isopropylmalate dehydrogenase compare
HGI48_RS00095 -1.9 -1.7 PAS domain-containing protein compare
HGI48_RS06070 -1.9 -6.7 phosphoribosylformylglycinamidine cyclo-ligase compare
HGI48_RS21655 -1.9 -2.5 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
HGI48_RS01900 -1.8 -6.9 aspartate carbamoyltransferase compare
HGI48_RS08375 -1.8 -11.2 DNA phosphorothioation system sulfurtransferase DndC compare
HGI48_RS00850 -1.8 -8.6 phosphoenolpyruvate carboxylase compare
HGI48_RS19100 -1.8 -7.0 glucose-6-phosphate isomerase compare
HGI48_RS02575 -1.7 -5.9 heavy metal translocating P-type ATPase compare
HGI48_RS06550 -1.7 -2.4 colicin uptake protein TolR compare
HGI48_RS14270 -1.7 -1.6 NADH-quinone oxidoreductase subunit J compare
HGI48_RS18175 -1.7 -2.6 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA compare
HGI48_RS18075 -1.7 -2.0 siderophore-interacting protein compare
HGI48_RS12630 -1.7 -2.0 pyridoxamine 5'-phosphate oxidase compare
HGI48_RS18245 -1.7 -5.2 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HGI48_RS01210 -1.7 -6.7 phosphoribosylamine--glycine ligase compare
HGI48_RS14280 -1.7 -1.9 NADH-quinone oxidoreductase subunit NuoH compare
HGI48_RS17235 -1.7 -2.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
HGI48_RS06340 -1.6 -6.4 asparagine synthase B compare
HGI48_RS01555 -1.6 -6.0 glutamate synthase small subunit compare
HGI48_RS00355 -1.6 -6.8 argininosuccinate synthase compare
HGI48_RS18055 -1.6 -8.7 2-isopropylmalate synthase compare
HGI48_RS15750 -1.6 -10.5 phosphoribosylformylglycinamidine synthase compare
HGI48_RS00680 -1.6 -2.3 orotate phosphoribosyltransferase compare
HGI48_RS10140 -1.6 -2.2 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HGI48_RS12670 -1.6 -4.3 Grx4 family monothiol glutaredoxin compare
HGI48_RS15185 -1.5 -1.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
HGI48_RS00515 -1.5 -3.9 LuxR family transcriptional regulator compare
HGI48_RS20270 -1.5 -6.4 ketol-acid reductoisomerase compare
HGI48_RS03265 -1.5 -3.6 lipoprotein NlpI compare
HGI48_RS03440 -1.5 -2.1 site-specific tyrosine recombinase XerD compare
HGI48_RS14260 -1.5 -2.8 NADH-quinone oxidoreductase subunit L compare
HGI48_RS20295 -1.5 -6.0 dihydroxy-acid dehydratase compare
HGI48_RS01215 -1.5 -5.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HGI48_RS14445 -1.5 -3.3 4-phosphoerythronate dehydrogenase PdxB compare
HGI48_RS20480 -1.4 -6.2 aquaporin family protein compare
HGI48_RS20220 -1.4 -2.9 thioredoxin TrxA compare
HGI48_RS00875 -1.4 -5.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
HGI48_RS01915 -1.4 -6.6 ornithine carbamoyltransferase compare
HGI48_RS01435 -1.4 -3.1 PTS IIA-like nitrogen regulatory protein PtsN compare
HGI48_RS12970 -1.4 -6.7 porin compare
HGI48_RS18510 -1.4 -7.5 class 1 fructose-bisphosphatase compare
HGI48_RS01505 -1.3 -3.0 BolA family iron metabolism protein IbaG compare
HGI48_RS12040 -1.3 -2.1 two-component system response regulator NarL compare
HGI48_RS00265 -1.3 -2.0 mannitol-1-phosphate 5-dehydrogenase compare
HGI48_RS17770 -1.3 -1.1 DeoR/GlpR transcriptional regulator compare
HGI48_RS00870 -1.3 -4.1 acetylornithine deacetylase compare
HGI48_RS06085 -1.3 -2.9 DnaA inactivator Hda compare
HGI48_RS12920 -1.3 -1.9 cell division protein ZapC compare
HGI48_RS08380 -1.3 -4.3 DNA sulfur modification protein DndB compare
HGI48_RS10430 -1.2 -2.0 TonB system transport protein TonB compare
HGI48_RS19815 -1.2 -2.1 glycerol-3-phosphate dehydrogenase compare
HGI48_RS08300 -1.2 -3.7 CcdB family protein compare
HGI48_RS14285 -1.2 -1.2 NADH-quinone oxidoreductase subunit NuoG compare
HGI48_RS08685 -1.2 -2.9 malonyl-ACP O-methyltransferase BioC compare
HGI48_RS21210 -1.2 -3.9 D-tyrosyl-tRNA(Tyr) deacylase compare
HGI48_RS08370 -1.2 -5.3 DNA sulfur modification protein DndD compare
HGI48_RS04365 -1.2 -1.5 RpoE-regulated lipoprotein compare
HGI48_RS03900 -1.2 -1.7 hypothetical protein compare
HGI48_RS20735 -1.2 -2.7 aspartate 1-decarboxylase autocleavage activator PanM compare
HGI48_RS12355 -1.2 -2.5 LUD domain-containing protein compare
HGI48_RS05700 -1.2 -1.4 DNA-binding protein HU-beta compare
HGI48_RS18805 -1.2 -2.5 hypothetical protein compare
HGI48_RS02040 -1.2 -3.1 GNAT family N-acetyltransferase compare
HGI48_RS20190 -1.1 -2.0 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
HGI48_RS02815 -1.1 -3.6 YgjV family protein compare
HGI48_RS00955 -1.1 -1.1 helix-turn-helix transcriptional regulator compare
HGI48_RS10465 -1.1 -4.6 tryptophan synthase subunit beta compare
HGI48_RS20545 -1.1 -1.9 NUDIX domain-containing protein compare
HGI48_RS05200 -1.1 -1.8 VOC family protein compare
HGI48_RS07055 -1.1 -1.0 IS481 family transposase compare
HGI48_RS16605 -1.1 -1.7 glutamate 5-kinase compare
HGI48_RS18240 -1.1 -5.8 carbamoyl-phosphate synthase large subunit compare
HGI48_RS04905 -1.1 -4.0 oxidative damage protection protein compare
HGI48_RS14035 -1.1 -1.6 LD-carboxypeptidase compare
HGI48_RS00885 -1.1 -3.4 argininosuccinate lyase compare
HGI48_RS04970 -1.1 -1.7 thymidylate synthase compare
HGI48_RS11530 -1.0 -1.8 tRNA 2-thiouridine(34) synthase MnmA compare
HGI48_RS01550 -1.0 -4.0 ClpXP protease specificity-enhancing factor compare
HGI48_RS16600 -1.0 -3.5 glutamate-5-semialdehyde dehydrogenase compare
HGI48_RS10460 -1.0 -4.3 tryptophan synthase subunit alpha compare
HGI48_RS00295 -1.0 -1.5 hypothetical protein compare
HGI48_RS16250 -1.0 -4.4 bifunctional chorismate mutase/prephenate dehydratase compare
HGI48_RS14605 -1.0 -2.6 enterobactin transporter EntS compare
HGI48_RS16205 -1.0 -1.7 23S ribosomal RNA compare
HGI48_RS07115 -1.0 -1.8 EexN family lipoprotein compare
HGI48_RS12825 -1.0 -3.9 cysteine desulfurase SufS compare
HGI48_RS12660 -1.0 -2.4 lactoylglutathione lyase compare
HGI48_RS01300 -1.0 -1.6 50S ribosomal protein L11 methyltransferase compare
HGI48_RS18335 -1.0 -3.5 threonine synthase compare
HGI48_RS09745 -1.0 -2.2 histidinol dehydrogenase compare
HGI48_RS03015 -1.0 -2.1 LysB family phage lysis regulatory protein compare
HGI48_RS16995 -1.0 -4.8 sulfate adenylyltransferase subunit CysD compare
HGI48_RS04315 -1.0 -3.1 outer membrane protein assembly factor BamE compare
HGI48_RS00600 -0.9 -3.0 ABC transporter ATP-binding protein compare
HGI48_RS10410 -0.9 -5.3 cardiolipin synthase compare
HGI48_RS20485 -0.9 -3.2 glycerol kinase GlpK compare
HGI48_RS15510 -0.9 -1.9 type II secretion system pilot lipoprotein GspS compare
HGI48_RS19425 -0.9 -1.6 sulfurtransferase complex subunit TusB compare
HGI48_RS04065 -0.9 -0.9 DUF736 domain-containing protein compare
HGI48_RS17345 -0.9 -2.2 YggS family pyridoxal phosphate-dependent enzyme compare
HGI48_RS03590 -0.9 -1.9 hypothetical protein compare
HGI48_RS16990 -0.9 -3.8 sulfate adenylyltransferase subunit CysN compare
HGI48_RS02580 -0.9 -1.8 Cd(II)/Pb(II)-responsive transcriptional regulator compare
HGI48_RS03655 -0.9 -1.1 MarR family transcriptional regulator compare
HGI48_RS08740 -0.9 -1.3 ABC transporter ATP-binding protein compare
HGI48_RS15470 -0.9 -1.7 type II secretion system minor pseudopilin GspI compare
HGI48_RS10080 -0.9 -1.9 DUF72 domain-containing protein compare
HGI48_RS02385 -0.9 -3.6 phosphoserine phosphatase compare
HGI48_RS04440 -0.9 -3.0 phosphoenolpyruvate-protein phosphotransferase PtsI compare
HGI48_RS16295 -0.9 -5.6 inner membrane protein YpjD compare
HGI48_RS18235 -0.9 -2.4 LysE family transporter compare
HGI48_RS15410 -0.9 -3.0 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
HGI48_RS10435 -0.9 -2.3 acyl-CoA thioester hydrolase YciA compare
HGI48_RS13755 -0.9 -1.7 acyl carrier protein compare
HGI48_RS14610 -0.9 -1.9 Fe(3+)-siderophore ABC transporter permease compare
HGI48_RS01150 -0.9 -2.0 thiazole synthase compare
HGI48_RS10470 -0.9 -2.8 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
HGI48_RS08775 -0.9 -2.3 ABC transporter ATP-binding protein compare
HGI48_RS06425 -0.9 -2.8 potassium-transporting ATPase subunit KdpB compare
HGI48_RS08275 -0.9 -2.1 hypothetical protein compare
HGI48_RS12865 -0.9 -1.7 AI-2E family transporter YdiK compare
HGI48_RS01165 -0.9 -2.9 thiamine phosphate synthase compare
HGI48_RS17745 -0.9 -3.3 glucosamine kinase compare
HGI48_RS03890 -0.9 -2.0 conjugal transfer protein TrbF compare
HGI48_RS06005 -0.9 -2.7 SDR family oxidoreductase compare
HGI48_RS04450 -0.9 -2.4 cysteine synthase A compare
HGI48_RS17750 -0.8 -1.3 ABC transporter ATP-binding protein compare
HGI48_RS09465 -0.8 -2.8 oxygen-insensitive NADPH nitroreductase compare
HGI48_RS10090 -0.8 -1.5 dihydroneopterin triphosphate diphosphatase compare
HGI48_RS12505 -0.8 -2.6 peptide ABC transporter substrate-binding protein SapA compare
HGI48_RS13170 -0.8 -3.5 aminodeoxychorismate lyase compare
HGI48_RS07965 -0.8 -1.8 type VI secretion system baseplate subunit TssG compare
HGI48_RS11950 -0.8 -1.8 type II toxin-antitoxin system prevent-host-death family antitoxin compare
HGI48_RS10245 -0.8 -1.7 GlsB/YeaQ/YmgE family stress response membrane protein compare
HGI48_RS14790 -0.8 -1.5 AAA family ATPase compare
HGI48_RS17005 -0.8 -1.9 phosphoadenylyl-sulfate reductase compare
HGI48_RS17355 -0.8 -1.6 YggT family protein compare
HGI48_RS06515 -0.8 -1.7 succinate--CoA ligase subunit alpha compare
HGI48_RS06930 -0.8 -3.5 2-dehydro-3-deoxygalactonokinase compare
HGI48_RS09750 -0.8 -1.7 ATP phosphoribosyltransferase compare
HGI48_RS03770 -0.8 -2.0 myo-inosose-2 dehydratase compare
HGI48_RS19120 -0.8 -3.9 hypothetical protein compare
HGI48_RS19785 -0.8 -1.1 Fe-S biogenesis protein NfuA compare
HGI48_RS15580 -0.8 -2.1 cytoskeleton protein RodZ compare
HGI48_RS10990 -0.8 -1.6 AAA family ATPase compare
HGI48_RS07340 -0.8 -1.5 respiratory chain complex I subunit 1 family protein compare
HGI48_RS11295 -0.8 -1.5 CoA pyrophosphatase compare
HGI48_RS16985 -0.8 -2.1 adenylyl-sulfate kinase compare
HGI48_RS10485 -0.8 -3.7 anthranilate synthase component 1 compare
HGI48_RS00880 -0.8 -2.4 acetylglutamate kinase compare
HGI48_RS08295 -0.8 -1.1 IS481 family transposase compare
HGI48_RS12840 -0.8 -3.8 Fe-S cluster assembly protein SufB compare
HGI48_RS20405 -0.8 -2.4 DNA-binding transcriptional regulator OxyR compare
HGI48_RS14710 -0.8 -1.4 type II secretion system minor pseudopilin GspI compare
HGI48_RS05795 -0.8 -3.5 efflux RND transporter periplasmic adaptor subunit compare
HGI48_RS17530 -0.8 -1.0 RES family NAD+ phosphorylase compare
HGI48_RS03935 -0.8 -3.9 conjugal transfer protein TraG compare
HGI48_RS03215 -0.8 -0.6 preprotein translocase subunit SecG compare
HGI48_RS18205 -0.8 -3.6 Co2+/Mg2+ efflux protein ApaG compare
HGI48_RS17015 -0.7 -4.0 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
HGI48_RS17485 -0.7 -2.7 diaminopimelate decarboxylase compare
HGI48_RS10075 -0.7 -3.4 MAPEG family protein compare
HGI48_RS15765 -0.7 -2.8 N-acetylmuramic acid 6-phosphate etherase compare
HGI48_RS11595 -0.7 -1.0 damage-inducible protein J compare
HGI48_RS17685 -0.7 -1.7 hypothetical protein compare
HGI48_RS04915 -0.7 -2.5 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
HGI48_RS18345 -0.7 -3.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HGI48_RS12835 -0.7 -2.7 Fe-S cluster assembly ATPase SufC compare
HGI48_RS17775 -0.7 -2.3 D-threonate 4-phosphate dehydrogenase compare
HGI48_RS08280 -0.7 -2.7 DUF736 domain-containing protein compare
HGI48_RS04010 -0.7 -2.7 helix-turn-helix transcriptional regulator compare
HGI48_RS17010 -0.7 -3.9 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola 67-19 in carbon source experiments

For carbon source Glycerol across organisms