Experiment setATCH213 for Dickeya dianthicola 67-19

Compare to:

PDB

200 most important genes:

  gene name fitness t score description  
HGI48_RS18835 -2.7 -1.5 nitrogen fixation protein NifM compare
HGI48_RS10480 -2.4 -3.9 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein compare
HGI48_RS20375 -2.4 -11.5 glutamate racemase compare
HGI48_RS18520 -2.3 -2.2 adenylosuccinate synthase compare
HGI48_RS12060 -2.2 -3.0 RNA chaperone ProQ compare
HGI48_RS10470 -2.0 -6.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
HGI48_RS17565 -2.0 -6.3 alanine racemase compare
HGI48_RS15225 -1.9 -4.7 polyphosphate kinase 1 compare
HGI48_RS21235 -1.8 -8.1 nitrogen regulation protein NR(I) compare
HGI48_RS03265 -1.8 -4.9 lipoprotein NlpI compare
HGI48_RS21355 -1.8 -11.4 low affinity potassium transporter Kup compare
HGI48_RS13275 -1.8 -11.1 glucans biosynthesis glucosyltransferase MdoH compare
HGI48_RS20595 -1.8 -4.3 envelope stress response regulator transcription factor CpxR compare
HGI48_RS14445 -1.8 -4.2 4-phosphoerythronate dehydrogenase PdxB compare
HGI48_RS05730 -1.7 -7.8 SmdA family multidrug ABC transporter permease/ATP-binding protein compare
HGI48_RS18375 -1.6 -4.8 inosine/xanthosine triphosphatase compare
HGI48_RS01930 -1.6 -3.4 GNAT family N-acetyltransferase compare
HGI48_RS13280 -1.6 -9.1 glucan biosynthesis protein G compare
HGI48_RS10075 -1.6 -6.5 MAPEG family protein compare
HGI48_RS14435 -1.5 -2.0 tRNA pseudouridine(38-40) synthase TruA compare
HGI48_RS00795 -1.5 -2.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
HGI48_RS10475 -1.5 -5.8 anthranilate phosphoribosyltransferase compare
HGI48_RS18075 -1.5 -2.7 siderophore-interacting protein compare
HGI48_RS19100 -1.5 -8.1 glucose-6-phosphate isomerase compare
HGI48_RS09735 -1.5 -2.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HGI48_RS17355 -1.4 -3.0 YggT family protein compare
HGI48_RS08645 -1.4 -8.0 NAD-dependent malic enzyme compare
HGI48_RS14680 -1.4 -1.3 membrane protein YpdK compare
HGI48_RS10050 -1.4 -2.1 VOC family protein compare
HGI48_RS04435 -1.4 -1.4 PTS glucose transporter subunit IIA compare
HGI48_RS10460 -1.4 -3.8 tryptophan synthase subunit alpha compare
HGI48_RS15560 -1.4 -2.5 outer membrane protein assembly factor BamB compare
HGI48_RS05735 -1.4 -7.6 SmdB family multidrug efflux ABC transporter permease/ATP-binding protein compare
HGI48_RS04970 -1.3 -2.3 thymidylate synthase compare
HGI48_RS08355 -1.3 -2.5 IS481 family transposase compare
HGI48_RS10485 -1.3 -5.5 anthranilate synthase component 1 compare
HGI48_RS12305 -1.3 -1.9 sodium-potassium/proton antiporter ChaA compare
HGI48_RS05105 -1.3 -4.9 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
HGI48_RS10465 -1.3 -5.9 tryptophan synthase subunit beta compare
HGI48_RS06400 -1.3 -7.7 alpha-D-glucose phosphate-specific phosphoglucomutase compare
HGI48_RS00045 -1.3 -6.2 oligopeptidase A compare
HGI48_RS06495 -1.3 -5.9 succinate dehydrogenase iron-sulfur subunit compare
HGI48_RS01500 -1.2 -4.1 lipid asymmetry maintenance protein MlaB compare
HGI48_RS09730 -1.2 -4.5 imidazole glycerol phosphate synthase subunit HisH compare
HGI48_RS01515 -1.2 -7.6 outer membrane-stress sensor serine endopeptidase DegS compare
HGI48_RS18195 -1.2 -3.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HGI48_RS08555 -1.2 -1.2 helix-turn-helix domain-containing protein compare
HGI48_RS11740 -1.2 -2.3 type III secretion protein compare
HGI48_RS01435 -1.2 -2.9 PTS IIA-like nitrogen regulatory protein PtsN compare
HGI48_RS11245 -1.2 -2.9 septum site-determining protein MinD compare
HGI48_RS04315 -1.1 -3.4 outer membrane protein assembly factor BamE compare
HGI48_RS06485 -1.1 -3.3 succinate dehydrogenase membrane anchor subunit compare
HGI48_RS06480 -1.1 -3.0 succinate dehydrogenase cytochrome b556 subunit compare
HGI48_RS15850 -1.1 -5.2 RNA polymerase sigma factor RpoE compare
HGI48_RS06830 -1.1 -3.7 GalU regulator GalF compare
HGI48_RS14920 -1.1 -3.6 inovirus-type Gp2 protein compare
HGI48_RS00800 -1.1 -1.6 serine O-acetyltransferase compare
HGI48_RS09835 -1.0 -4.1 DUF496 family protein compare
HGI48_RS11215 -1.0 -2.5 hypothetical protein compare
HGI48_RS18110 -1.0 -1.9 thiamine ABC transporter ATP-binding protein ThiQ compare
HGI48_RS09715 -1.0 -2.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HGI48_RS16355 -1.0 -1.5 recombinase RecA compare
HGI48_RS15730 -1.0 -4.8 nitrogen regulatory protein P-II compare
HGI48_RS07925 -1.0 -4.6 TetR/AcrR family transcriptional regulator compare
HGI48_RS18830 -1.0 -3.0 IS3 family transposase compare
HGI48_RS19900 -1.0 -3.0 gluconate operon transcriptional repressor GntR compare
HGI48_RS03555 -1.0 -1.7 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
HGI48_RS18265 -1.0 -1.7 FKBP-type peptidyl-prolyl cis-trans isomerase compare
HGI48_RS14405 -1.0 -6.8 amidophosphoribosyltransferase compare
HGI48_RS05535 -1.0 -0.9 preprotein translocase subunit YajC compare
HGI48_RS19030 -1.0 -1.7 tRNA-Gly compare
HGI48_RS13110 -1.0 -3.2 alpha/beta hydrolase compare
HGI48_RS19235 -1.0 -3.8 large-conductance mechanosensitive channel protein MscL compare
HGI48_RS14465 -1.0 -2.6 tripartite tricarboxylate transporter TctB family protein compare
HGI48_RS09295 -1.0 -5.4 sugar transporter compare
HGI48_RS05455 -1.0 -2.2 pyrimidine/purine nucleoside phosphorylase compare
HGI48_RS13540 -1.0 -3.1 flagellar export chaperone FlgN compare
HGI48_RS15980 -1.0 -4.9 sulfate ABC transporter permease subunit CysW compare
HGI48_RS10140 -0.9 -2.2 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HGI48_RS20035 -0.9 -4.0 DNA helicase II compare
HGI48_RS06925 -0.9 -3.4 D-galactonate utilization transcriptional regulator DgoR compare
HGI48_RS19745 -0.9 -3.2 two-component system sensor histidine kinase EnvZ compare
HGI48_RS21230 -0.9 -4.3 nitrogen regulation protein NR(II) compare
HGI48_RS01445 -0.9 -2.7 RNA polymerase factor sigma-54 compare
HGI48_RS06490 -0.9 -4.6 succinate dehydrogenase flavoprotein subunit compare
HGI48_RS19690 -0.9 -1.1 DUF2531 family protein compare
HGI48_RS10550 -0.9 -1.6 electron transport complex subunit E compare
HGI48_RS15985 -0.9 -2.8 sulfate ABC transporter permease subunit CysT compare
HGI48_RS13245 -0.9 -2.3 biofilm formation regulator BssS compare
HGI48_RS09740 -0.9 -2.2 histidinol-phosphate transaminase compare
HGI48_RS12960 -0.9 -1.8 nicotinate phosphoribosyltransferase compare
HGI48_RS11645 -0.9 -2.0 CesT family type III secretion system chaperone compare
HGI48_RS05200 -0.9 -2.6 VOC family protein compare
HGI48_RS12055 -0.9 -2.7 carboxy terminal-processing peptidase compare
HGI48_RS00095 -0.9 -1.3 PAS domain-containing protein compare
HGI48_RS21640 -0.8 -3.1 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
HGI48_RS11240 -0.8 -2.8 septum site-determining protein MinC compare
HGI48_RS18175 -0.8 -1.7 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA compare
HGI48_RS02790 -0.8 -2.8 transcriptional regulator ExuR compare
HGI48_RS01650 -0.8 -4.2 3',5'-cyclic-AMP phosphodiesterase compare
HGI48_RS01430 -0.8 -3.0 RNase adapter RapZ compare
HGI48_RS20045 -0.8 -1.8 tyrosine recombinase XerC compare
HGI48_RS19435 -0.8 -1.1 sulfurtransferase complex subunit TusD compare
HGI48_RS14100 -0.8 -1.9 nitrate ABC transporter permease compare
HGI48_RS06135 -0.8 -2.8 esterase compare
HGI48_RS20545 -0.8 -1.6 NUDIX domain-containing protein compare
HGI48_RS04795 -0.8 -2.3 hypothetical protein compare
HGI48_RS06270 -0.8 -2.9 glutamate/aspartate ABC transporter substrate-binding protein compare
HGI48_RS09055 -0.8 -3.0 type II toxin-antitoxin system RelE/ParE family toxin compare
HGI48_RS01635 -0.8 -2.4 outer membrane channel protein TolC compare
HGI48_RS04735 -0.8 -2.9 hypothetical protein compare
HGI48_RS12990 -0.8 -3.7 aspartate/tyrosine/aromatic aminotransferase compare
HGI48_RS13620 -0.8 -1.5 protein DsrB compare
HGI48_RS15530 -0.8 -1.4 glutamine-hydrolyzing GMP synthase compare
HGI48_RS03035 -0.8 -2.6 GPW/gp25 family protein compare
HGI48_RS18020 -0.8 -2.0 division/cell wall cluster transcriptional repressor MraZ compare
HGI48_RS12630 -0.8 -0.7 pyridoxamine 5'-phosphate oxidase compare
HGI48_RS05150 -0.7 -3.3 sigma E protease regulator RseP compare
HGI48_RS12580 -0.7 -3.5 orotidine-5'-phosphate decarboxylase compare
HGI48_RS05700 -0.7 -1.6 DNA-binding protein HU-beta compare
HGI48_RS13390 -0.7 -2.9 flagellar filament capping protein FliD compare
HGI48_RS11545 -0.7 -1.8 two-component system response regulator PhoP compare
HGI48_RS13255 -0.7 -3.3 YceI family protein compare
HGI48_RS12105 -0.7 -2.0 replication protein B compare
HGI48_RS20450 -0.7 -2.1 cell division protein FtsN compare
HGI48_RS09920 -0.7 -2.9 helix-turn-helix transcriptional regulator compare
HGI48_RS19430 -0.7 -2.2 sulfurtransferase complex subunit TusC compare
HGI48_RS16190 -0.7 -3.6 endonuclease/exonuclease/phosphatase family protein compare
HGI48_RS08345 -0.7 -1.6 restriction endonuclease compare
HGI48_RS00015 -0.7 -2.2 DNA replication/repair protein RecF compare
HGI48_RS18125 -0.7 -1.6 acetolactate synthase small subunit compare
HGI48_RS06140 -0.7 -2.3 YpfN family protein compare
HGI48_RS09750 -0.7 -1.5 ATP phosphoribosyltransferase compare
HGI48_RS16060 -0.7 -3.8 polynucleotide adenylyltransferase PcnB compare
HGI48_RS13220 -0.7 -2.4 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
HGI48_RS20395 -0.7 -3.0 HTH-type transcriptional repressor FabR compare
HGI48_RS03190 -0.7 -1.9 ribosome assembly RNA-binding protein YhbY compare
HGI48_RS02330 -0.7 -2.5 hypothetical protein compare
HGI48_RS07165 -0.7 -2.3 AlpA family phage regulatory protein compare
HGI48_RS17185 -0.7 -2.3 glycerol-3-phosphate 1-O-acyltransferase PlsY compare
HGI48_RS19715 -0.7 -2.0 ADP compounds hydrolase NudE compare
HGI48_RS07005 -0.7 -3.4 phytanoyl-CoA dioxygenase family protein compare
HGI48_RS21655 -0.7 -1.1 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
HGI48_RS07715 -0.7 -3.5 DUF2076 domain-containing protein compare
HGI48_RS11375 -0.7 -1.7 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
HGI48_RS02290 -0.7 -1.6 hypothetical protein compare
HGI48_RS01230 -0.7 -1.1 23S ribosomal RNA compare
HGI48_RS15430 -0.7 -2.3 amino acid ABC transporter ATP-binding protein compare
HGI48_RS09210 -0.7 -1.8 hypothetical protein compare
HGI48_RS14935 -0.7 -1.0 hypothetical protein compare
HGI48_RS06060 -0.7 -1.6 HTH-type transcriptional regulator GalS compare
HGI48_RS14545 -0.6 -2.8 phosphohistidine phosphatase SixA compare
HGI48_RS21465 -0.6 -3.5 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HGI48_RS14970 -0.6 -1.3 hypothetical protein compare
HGI48_RS08890 -0.6 -1.1 DNA starvation/stationary phase protection protein Dps compare
HGI48_RS01210 -0.6 -4.3 phosphoribosylamine--glycine ligase compare
HGI48_RS12495 -0.6 -1.8 phage shock protein PspA compare
HGI48_RS15865 -0.6 -4.4 ATP-dependent RNA helicase SrmB compare
HGI48_RS01845 -0.6 -1.9 ABC transporter permease compare
HGI48_RS20250 -0.6 -1.0 peptidylprolyl isomerase compare
HGI48_RS12550 -0.6 -1.9 aldo/keto reductase compare
HGI48_RS06085 -0.6 -1.4 DnaA inactivator Hda compare
HGI48_RS00345 -0.6 -2.3 nickel/cobalt efflux protein RcnA compare
HGI48_RS12925 -0.6 -2.5 quinone-dependent dihydroorotate dehydrogenase compare
HGI48_RS01760 -0.6 -2.5 LacI family DNA-binding transcriptional regulator compare
HGI48_RS13235 -0.6 -3.3 dihydroorotase compare
HGI48_RS08330 -0.6 -1.8 DNA phosphorothioation-dependent restriction protein DptF compare
HGI48_RS20400 -0.6 -2.6 Si-specific NAD(P)(+) transhydrogenase compare
HGI48_RS12805 -0.6 -2.1 pyruvate kinase PykF compare
HGI48_RS16175 -0.6 -4.0 methyltransferase domain-containing protein compare
HGI48_RS15510 -0.6 -1.1 type II secretion system pilot lipoprotein GspS compare
HGI48_RS10985 -0.6 -2.8 Fic family protein compare
HGI48_RS15275 -0.6 -1.9 heat shock protein HspQ compare
HGI48_RS03520 -0.6 -2.9 sugar transferase compare
HGI48_RS06535 -0.6 -1.2 cyd operon protein YbgE compare
HGI48_RS12970 -0.6 -3.4 porin compare
HGI48_RS05270 -0.6 -2.1 hypothetical protein compare
HGI48_RS00960 -0.6 -1.8 YeeE/YedE family protein compare
HGI48_RS04395 -0.6 -2.1 Dyp-type peroxidase compare
HGI48_RS21130 -0.6 -2.6 LysR family transcriptional regulator compare
HGI48_RS14580 -0.6 -0.6 tRNA-Arg compare
HGI48_RS13600 -0.6 -4.0 flagellar motor stator protein MotA compare
HGI48_RS19200 -0.6 -2.7 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
HGI48_RS04495 -0.6 -2.2 nitric oxide reductase transcriptional regulator NorR compare
HGI48_RS09130 -0.6 -2.0 DUF4868 domain-containing protein compare
HGI48_RS03655 -0.6 -0.8 MarR family transcriptional regulator compare
HGI48_RS06440 -0.6 -1.0 YbfA family protein compare
HGI48_RS04835 -0.6 -0.9 hypothetical protein compare
HGI48_RS15130 -0.6 -2.1 HutD family protein compare
HGI48_RS00375 -0.6 -2.6 HAD-IA family hydrolase compare
HGI48_RS15285 -0.6 -1.8 DUF2057 family protein compare
HGI48_RS02765 -0.6 -1.0 YqjK-like family protein compare
HGI48_RS06815 -0.6 -1.2 hypothetical protein compare
HGI48_RS10780 -0.6 -2.2 protease inhibitor Inh/omp19 family protein compare
HGI48_RS07045 -0.6 -1.8 transposase compare
HGI48_RS14630 -0.6 -1.7 MbtH family NRPS accessory protein compare
HGI48_RS16360 -0.6 -1.9 nicotinamide-nucleotide amidase compare
HGI48_RS01570 -0.6 -2.1 aerobic respiration two-component sensor histidine kinase ArcB compare
HGI48_RS09355 -0.6 -2.0 LysR family transcriptional regulator compare
HGI48_RS20270 -0.6 -3.5 ketol-acid reductoisomerase compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola 67-19 in control experiments

For control kanamycin across organisms