Experiment setATCH212 for Dickeya dianthicola 67-19

Compare to:

PDB

200 most important genes:

  gene name fitness t score description  
HGI48_RS18520 -2.4 -2.4 adenylosuccinate synthase compare
HGI48_RS21655 -2.3 -2.5 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
HGI48_RS04435 -2.2 -2.5 PTS glucose transporter subunit IIA compare
HGI48_RS12060 -2.1 -1.8 RNA chaperone ProQ compare
HGI48_RS21355 -2.1 -14.1 low affinity potassium transporter Kup compare
HGI48_RS10480 -2.0 -3.9 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein compare
HGI48_RS18375 -2.0 -5.2 inosine/xanthosine triphosphatase compare
HGI48_RS13275 -2.0 -12.3 glucans biosynthesis glucosyltransferase MdoH compare
HGI48_RS18110 -1.8 -2.5 thiamine ABC transporter ATP-binding protein ThiQ compare
HGI48_RS12960 -1.8 -3.7 nicotinate phosphoribosyltransferase compare
HGI48_RS20375 -1.8 -8.4 glutamate racemase compare
HGI48_RS12630 -1.7 -1.6 pyridoxamine 5'-phosphate oxidase compare
HGI48_RS10465 -1.7 -7.6 tryptophan synthase subunit beta compare
HGI48_RS10470 -1.7 -5.5 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
HGI48_RS10075 -1.7 -6.2 MAPEG family protein compare
HGI48_RS18195 -1.7 -4.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HGI48_RS11020 -1.6 -2.5 hypothetical protein compare
HGI48_RS03555 -1.6 -2.0 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
HGI48_RS20595 -1.6 -3.8 envelope stress response regulator transcription factor CpxR compare
HGI48_RS21235 -1.6 -7.4 nitrogen regulation protein NR(I) compare
HGI48_RS15805 -1.6 -2.0 pyridoxine 5'-phosphate synthase compare
HGI48_RS09730 -1.6 -5.4 imidazole glycerol phosphate synthase subunit HisH compare
HGI48_RS15225 -1.6 -3.7 polyphosphate kinase 1 compare
HGI48_RS06440 -1.6 -1.7 YbfA family protein compare
HGI48_RS17565 -1.6 -4.9 alanine racemase compare
HGI48_RS14445 -1.6 -2.5 4-phosphoerythronate dehydrogenase PdxB compare
HGI48_RS18050 -1.6 -3.6 leu operon leader peptide compare
HGI48_RS00045 -1.5 -8.6 oligopeptidase A compare
HGI48_RS10460 -1.5 -5.5 tryptophan synthase subunit alpha compare
HGI48_RS12920 -1.5 -2.5 cell division protein ZapC compare
HGI48_RS08525 -1.5 -2.8 DNA-damage-inducible protein J compare
HGI48_RS20045 -1.5 -3.3 tyrosine recombinase XerC compare
HGI48_RS09735 -1.5 -2.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HGI48_RS19030 -1.4 -3.4 tRNA-Gly compare
HGI48_RS08300 -1.4 -2.8 CcdB family protein compare
HGI48_RS19100 -1.4 -6.9 glucose-6-phosphate isomerase compare
HGI48_RS08645 -1.4 -7.5 NAD-dependent malic enzyme compare
HGI48_RS04315 -1.3 -5.4 outer membrane protein assembly factor BamE compare
HGI48_RS05730 -1.3 -6.6 SmdA family multidrug ABC transporter permease/ATP-binding protein compare
HGI48_RS13280 -1.3 -7.7 glucan biosynthesis protein G compare
HGI48_RS14040 -1.3 -2.2 LysR family transcriptional regulator compare
HGI48_RS00795 -1.3 -1.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
HGI48_RS16360 -1.3 -4.0 nicotinamide-nucleotide amidase compare
HGI48_RS01590 -1.3 -1.9 divisome-associated lipoprotein YraP compare
HGI48_RS12055 -1.3 -3.1 carboxy terminal-processing peptidase compare
HGI48_RS05735 -1.3 -7.4 SmdB family multidrug efflux ABC transporter permease/ATP-binding protein compare
HGI48_RS06830 -1.3 -4.0 GalU regulator GalF compare
HGI48_RS12925 -1.3 -4.0 quinone-dependent dihydroorotate dehydrogenase compare
HGI48_RS05105 -1.3 -3.9 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
HGI48_RS13045 -1.2 -2.4 NAD-dependent protein deacylase compare
HGI48_RS13535 -1.2 -3.6 anti-sigma-28 factor FlgM compare
HGI48_RS10485 -1.2 -4.2 anthranilate synthase component 1 compare
HGI48_RS19900 -1.2 -3.4 gluconate operon transcriptional repressor GntR compare
HGI48_RS12570 -1.2 -2.4 osmotically-inducible lipoprotein OsmB compare
HGI48_RS04970 -1.2 -2.3 thymidylate synthase compare
HGI48_RS09460 -1.2 -1.9 glutaredoxin, GrxA family compare
HGI48_RS17355 -1.1 -2.6 YggT family protein compare
HGI48_RS11245 -1.1 -3.4 septum site-determining protein MinD compare
HGI48_RS18965 -1.1 -3.4 efflux RND transporter periplasmic adaptor subunit compare
HGI48_RS14405 -1.1 -7.2 amidophosphoribosyltransferase compare
HGI48_RS21230 -1.1 -5.3 nitrogen regulation protein NR(II) compare
HGI48_RS11375 -1.1 -2.0 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
HGI48_RS20750 -1.1 -1.3 cell division ATP-binding protein FtsE compare
HGI48_RS11595 -1.1 -2.3 damage-inducible protein J compare
HGI48_RS09740 -1.1 -2.6 histidinol-phosphate transaminase compare
HGI48_RS03265 -1.1 -3.0 lipoprotein NlpI compare
HGI48_RS06485 -1.1 -3.2 succinate dehydrogenase membrane anchor subunit compare
HGI48_RS19750 -1.1 -2.4 two-component system response regulator OmpR compare
HGI48_RS01780 -1.1 -2.7 aminoimidazole riboside kinase compare
HGI48_RS15190 -1.1 -3.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
HGI48_RS08385 -1.1 -2.2 helix-turn-helix transcriptional regulator compare
HGI48_RS00965 -1.1 -1.4 YeeE/YedE family protein compare
HGI48_RS20395 -1.0 -4.3 HTH-type transcriptional repressor FabR compare
HGI48_RS01895 -1.0 -2.0 aspartate carbamoyltransferase regulatory subunit compare
HGI48_RS16355 -1.0 -2.2 recombinase RecA compare
HGI48_RS08345 -1.0 -3.1 restriction endonuclease compare
HGI48_RS12305 -1.0 -1.9 sodium-potassium/proton antiporter ChaA compare
HGI48_RS01210 -1.0 -5.7 phosphoribosylamine--glycine ligase compare
HGI48_RS06005 -1.0 -2.9 SDR family oxidoreductase compare
HGI48_RS06120 -1.0 -3.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HGI48_RS15445 -1.0 -1.5 hypothetical protein compare
HGI48_RS10475 -1.0 -3.1 anthranilate phosphoribosyltransferase compare
HGI48_RS02010 -1.0 -2.5 AlpA family transcriptional regulator compare
HGI48_RS19435 -1.0 -0.9 sulfurtransferase complex subunit TusD compare
HGI48_RS18610 -1.0 -1.9 GDP-L-fucose synthase compare
HGI48_RS01650 -1.0 -5.2 3',5'-cyclic-AMP phosphodiesterase compare
HGI48_RS16945 -0.9 -1.8 RNA polymerase sigma factor RpoS compare
HGI48_RS01430 -0.9 -3.8 RNase adapter RapZ compare
HGI48_RS04795 -0.9 -2.5 hypothetical protein compare
HGI48_RS09745 -0.9 -2.6 histidinol dehydrogenase compare
HGI48_RS15850 -0.9 -4.2 RNA polymerase sigma factor RpoE compare
HGI48_RS13390 -0.9 -5.0 flagellar filament capping protein FliD compare
HGI48_RS03585 -0.9 -2.9 hypothetical protein compare
HGI48_RS17130 -0.9 -2.1 FlxA-like family protein compare
HGI48_RS13235 -0.9 -4.7 dihydroorotase compare
HGI48_RS20580 -0.9 -1.7 transposase compare
HGI48_RS13755 -0.9 -1.4 acyl carrier protein compare
HGI48_RS06400 -0.9 -5.6 alpha-D-glucose phosphate-specific phosphoglucomutase compare
HGI48_RS11545 -0.9 -2.2 two-component system response regulator PhoP compare
HGI48_RS09750 -0.9 -2.2 ATP phosphoribosyltransferase compare
HGI48_RS20035 -0.9 -2.7 DNA helicase II compare
HGI48_RS07145 -0.9 -2.4 hypothetical protein compare
HGI48_RS01515 -0.9 -5.6 outer membrane-stress sensor serine endopeptidase DegS compare
HGI48_RS08955 -0.9 -1.7 hypothetical protein compare
HGI48_RS06905 -0.9 -2.4 ABC transporter ATP-binding protein compare
HGI48_RS10430 -0.9 -1.8 TonB system transport protein TonB compare
HGI48_RS00800 -0.8 -1.4 serine O-acetyltransferase compare
HGI48_RS21720 -0.8 -2.2 membrane protein insertion efficiency factor YidD compare
HGI48_RS07350 -0.8 -1.6 4Fe-4S binding protein compare
HGI48_RS18500 -0.8 -1.7 YqgE/AlgH family protein compare
HGI48_RS06495 -0.8 -3.3 succinate dehydrogenase iron-sulfur subunit compare
HGI48_RS18210 -0.8 -1.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
HGI48_RS09835 -0.8 -3.0 DUF496 family protein compare
HGI48_RS07925 -0.8 -2.0 TetR/AcrR family transcriptional regulator compare
HGI48_RS17185 -0.8 -3.4 glycerol-3-phosphate 1-O-acyltransferase PlsY compare
HGI48_RS15490 -0.8 -1.5 type II secretion system protein M compare
HGI48_RS01990 -0.8 -2.1 helix-turn-helix domain-containing protein compare
HGI48_RS16190 -0.8 -4.1 endonuclease/exonuclease/phosphatase family protein compare
HGI48_RS06060 -0.8 -2.0 HTH-type transcriptional regulator GalS compare
HGI48_RS06480 -0.8 -1.9 succinate dehydrogenase cytochrome b556 subunit compare
HGI48_RS11915 -0.8 -4.6 methionine synthase compare
HGI48_RS11215 -0.8 -1.4 hypothetical protein compare
HGI48_RS00655 -0.8 -2.7 L-Ala-D/L-Glu epimerase compare
HGI48_RS15275 -0.8 -2.1 heat shock protein HspQ compare
HGI48_RS06490 -0.8 -3.8 succinate dehydrogenase flavoprotein subunit compare
HGI48_RS11945 -0.8 -2.0 type II toxin-antitoxin system death-on-curing family toxin compare
HGI48_RS08580 -0.8 -2.2 type VI secretion system tip protein VgrG compare
HGI48_RS11905 -0.8 -1.5 transposase compare
HGI48_RS17775 -0.8 -2.6 D-threonate 4-phosphate dehydrogenase compare
HGI48_RS19505 -0.8 -1.3 phosphotransferase compare
HGI48_RS08265 -0.8 -2.3 DUF4224 domain-containing protein compare
HGI48_RS03325 -0.8 -1.8 purine-nucleoside phosphorylase compare
HGI48_RS07570 -0.8 -2.8 iron ABC transporter permease compare
HGI48_RS00785 -0.8 -2.3 rhodanese-like domain-containing protein compare
HGI48_RS03215 -0.8 -0.7 preprotein translocase subunit SecG compare
HGI48_RS20090 -0.8 -2.2 protoheme IX biogenesis protein HemY compare
HGI48_RS09220 -0.8 -4.1 ABC transporter permease subunit compare
HGI48_RS16175 -0.8 -4.8 methyltransferase domain-containing protein compare
HGI48_RS14315 -0.8 -4.5 transcriptional regulator LrhA compare
HGI48_RS15535 -0.7 -3.8 IMP dehydrogenase compare
HGI48_RS11605 -0.7 -1.4 hypothetical protein compare
HGI48_RS15325 -0.7 -1.4 hypothetical protein compare
HGI48_RS10155 -0.7 -2.5 pyruvate kinase compare
HGI48_RS13655 -0.7 -1.9 LysB family phage lysis regulatory protein compare
HGI48_RS15430 -0.7 -2.2 amino acid ABC transporter ATP-binding protein compare
HGI48_RS15195 -0.7 -1.4 HAAAP family serine/threonine permease compare
HGI48_RS12475 -0.7 -2.4 TIGR01620 family protein compare
HGI48_RS00165 -0.7 -3.0 valine--pyruvate transaminase compare
HGI48_RS05150 -0.7 -3.5 sigma E protease regulator RseP compare
HGI48_RS09540 -0.7 -3.1 N-acetylmuramoyl-L-alanine amidase compare
HGI48_RS10500 -0.7 -3.4 23S rRNA pseudouridine(2605) synthase RluB compare
HGI48_RS11740 -0.7 -1.4 type III secretion protein compare
HGI48_RS08355 -0.7 -1.4 IS481 family transposase compare
HGI48_RS11970 -0.7 -2.7 VOC family protein compare
HGI48_RS06795 -0.7 -1.5 glycosyltransferase compare
HGI48_RS00125 -0.7 -1.4 DUF3861 domain-containing protein compare
HGI48_RS04530 -0.7 -2.0 FMN-binding protein compare
HGI48_RS15470 -0.7 -1.9 type II secretion system minor pseudopilin GspI compare
HGI48_RS05740 -0.7 -2.7 P-II family nitrogen regulator compare
HGI48_RS00295 -0.7 -1.6 hypothetical protein compare
HGI48_RS13015 -0.7 -1.6 EAL domain-containing protein compare
HGI48_RS18130 -0.7 -2.6 DedA family protein compare
HGI48_RS11090 -0.7 -1.5 hypothetical protein compare
HGI48_RS10390 -0.7 -3.2 oligopeptide ABC transporter permease OppC compare
HGI48_RS13540 -0.7 -2.4 flagellar export chaperone FlgN compare
HGI48_RS07150 -0.7 -2.3 AAA family ATPase compare
HGI48_RS18245 -0.7 -2.6 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HGI48_RS15730 -0.7 -2.6 nitrogen regulatory protein P-II compare
HGI48_RS19745 -0.7 -2.5 two-component system sensor histidine kinase EnvZ compare
HGI48_RS10125 -0.7 -2.9 zinc ABC transporter ATP-binding protein ZnuC compare
HGI48_RS18155 -0.7 -1.7 hypothetical protein compare
HGI48_RS14710 -0.7 -1.6 type II secretion system minor pseudopilin GspI compare
HGI48_RS16230 -0.7 -3.6 polyphenol oxidase compare
HGI48_RS12330 -0.7 -3.1 acid resistance repetitive basic protein Asr compare
HGI48_RS06805 -0.7 -2.4 hypothetical protein compare
HGI48_RS08960 -0.7 -2.2 hypothetical protein compare
HGI48_RS20525 -0.7 -3.4 N-carbamoylputrescine amidase compare
HGI48_RS09810 -0.6 -1.7 citrate lyase holo-[acyl-carrier protein] synthase compare
HGI48_RS07715 -0.6 -3.8 DUF2076 domain-containing protein compare
HGI48_RS00960 -0.6 -0.9 YeeE/YedE family protein compare
HGI48_RS09295 -0.6 -3.2 sugar transporter compare
HGI48_RS18615 -0.6 -1.9 hypothetical protein compare
HGI48_RS05895 -0.6 -0.9 Cu(I)-responsive transcriptional regulator compare
HGI48_RS02410 -0.6 -1.2 stress-response protein compare
HGI48_RS14035 -0.6 -1.2 LD-carboxypeptidase compare
HGI48_RS07355 -0.6 -2.6 hydrogenase maturation factor HybG compare
HGI48_RS04690 -0.6 -1.7 CcdB family protein compare
HGI48_RS06070 -0.6 -2.6 phosphoribosylformylglycinamidine cyclo-ligase compare
HGI48_RS08350 -0.6 -1.9 class I SAM-dependent methyltransferase compare
HGI48_RS16205 -0.6 -1.0 23S ribosomal RNA compare
HGI48_RS19925 -0.6 -0.7 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
HGI48_RS07600 -0.6 -0.8 type II toxin-antitoxin system RelE/ParE family toxin compare
HGI48_RS17030 -0.6 -1.7 6-carboxytetrahydropterin synthase QueD compare
HGI48_RS10140 -0.6 -1.5 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HGI48_RS04765 -0.6 -1.1 hypothetical protein compare
HGI48_RS20520 -0.6 -3.4 agmatine deiminase compare
HGI48_RS01435 -0.6 -1.7 PTS IIA-like nitrogen regulatory protein PtsN compare
HGI48_RS19230 -0.6 -1.6 Trk system potassium transporter TrkA compare
HGI48_RS15750 -0.6 -4.8 phosphoribosylformylglycinamidine synthase compare
HGI48_RS08685 -0.6 -1.4 malonyl-ACP O-methyltransferase BioC compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola 67-19 in control experiments

For control kanamycin across organisms