Experiment setATCH211 for Dickeya dianthicola 67-19

Compare to:

PDB

200 most important genes:

  gene name fitness t score description  
HGI48_RS12060 -3.0 -3.2 RNA chaperone ProQ compare
HGI48_RS13620 -2.8 -4.2 protein DsrB compare
HGI48_RS21655 -2.7 -3.1 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
HGI48_RS10480 -2.4 -3.7 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein compare
HGI48_RS18520 -2.4 -2.4 adenylosuccinate synthase compare
HGI48_RS14445 -2.4 -3.6 4-phosphoerythronate dehydrogenase PdxB compare
HGI48_RS15225 -2.3 -5.1 polyphosphate kinase 1 compare
HGI48_RS20375 -2.2 -11.5 glutamate racemase compare
HGI48_RS10470 -2.2 -8.6 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
HGI48_RS10475 -2.1 -6.1 anthranilate phosphoribosyltransferase compare
HGI48_RS06085 -2.1 -3.6 DnaA inactivator Hda compare
HGI48_RS10485 -2.0 -7.9 anthranilate synthase component 1 compare
HGI48_RS11530 -2.0 -3.5 tRNA 2-thiouridine(34) synthase MnmA compare
HGI48_RS13275 -1.9 -11.3 glucans biosynthesis glucosyltransferase MdoH compare
HGI48_RS10075 -1.9 -7.7 MAPEG family protein compare
HGI48_RS14680 -1.9 -2.2 membrane protein YpdK compare
HGI48_RS16355 -1.8 -2.6 recombinase RecA compare
HGI48_RS11245 -1.8 -5.3 septum site-determining protein MinD compare
HGI48_RS13280 -1.8 -9.9 glucan biosynthesis protein G compare
HGI48_RS21355 -1.7 -11.1 low affinity potassium transporter Kup compare
HGI48_RS09750 -1.7 -3.9 ATP phosphoribosyltransferase compare
HGI48_RS05730 -1.7 -8.6 SmdA family multidrug ABC transporter permease/ATP-binding protein compare
HGI48_RS21235 -1.7 -8.5 nitrogen regulation protein NR(I) compare
HGI48_RS10460 -1.7 -5.0 tryptophan synthase subunit alpha compare
HGI48_RS08645 -1.7 -8.7 NAD-dependent malic enzyme compare
HGI48_RS19100 -1.7 -8.1 glucose-6-phosphate isomerase compare
HGI48_RS10465 -1.6 -7.5 tryptophan synthase subunit beta compare
HGI48_RS17565 -1.6 -4.6 alanine racemase compare
HGI48_RS17355 -1.6 -3.4 YggT family protein compare
HGI48_RS06480 -1.6 -4.0 succinate dehydrogenase cytochrome b556 subunit compare
HGI48_RS19030 -1.6 -7.6 tRNA-Gly compare
HGI48_RS20595 -1.6 -3.6 envelope stress response regulator transcription factor CpxR compare
HGI48_RS08355 -1.5 -2.7 IS481 family transposase compare
HGI48_RS00795 -1.5 -1.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
HGI48_RS05105 -1.4 -4.3 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
HGI48_RS11545 -1.4 -3.9 two-component system response regulator PhoP compare
HGI48_RS10070 -1.4 -2.2 carboxy-S-adenosyl-L-methionine synthase CmoA compare
HGI48_RS00045 -1.4 -7.0 oligopeptidase A compare
HGI48_RS21205 -1.4 -4.1 fatty acid biosynthesis protein FabY compare
HGI48_RS18375 -1.4 -4.5 inosine/xanthosine triphosphatase compare
HGI48_RS07300 -1.3 -2.5 hydrogenase maturation peptidase HycI compare
HGI48_RS08360 -1.3 -2.4 class I SAM-dependent methyltransferase compare
HGI48_RS21230 -1.2 -5.2 nitrogen regulation protein NR(II) compare
HGI48_RS11325 -1.2 -3.9 PTS mannose transporter subunit IID compare
HGI48_RS15850 -1.2 -6.1 RNA polymerase sigma factor RpoE compare
HGI48_RS14035 -1.2 -1.5 LD-carboxypeptidase compare
HGI48_RS18020 -1.2 -1.9 division/cell wall cluster transcriptional repressor MraZ compare
HGI48_RS06495 -1.2 -4.8 succinate dehydrogenase iron-sulfur subunit compare
HGI48_RS15730 -1.2 -5.0 nitrogen regulatory protein P-II compare
HGI48_RS06485 -1.2 -3.5 succinate dehydrogenase membrane anchor subunit compare
HGI48_RS14435 -1.2 -1.3 tRNA pseudouridine(38-40) synthase TruA compare
HGI48_RS14405 -1.2 -8.2 amidophosphoribosyltransferase compare
HGI48_RS04270 -1.1 -1.8 hypothetical protein compare
HGI48_RS09715 -1.1 -3.2 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HGI48_RS06120 -1.1 -4.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HGI48_RS18110 -1.1 -1.1 thiamine ABC transporter ATP-binding protein ThiQ compare
HGI48_RS07165 -1.1 -2.7 AlpA family phage regulatory protein compare
HGI48_RS16750 -1.1 -1.4 oxalurate catabolism protein HpxX compare
HGI48_RS08345 -1.1 -2.6 restriction endonuclease compare
HGI48_RS01670 -1.0 -3.9 NAD(P)H-dependent oxidoreductase compare
HGI48_RS03900 -1.0 -1.9 hypothetical protein compare
HGI48_RS12580 -1.0 -4.6 orotidine-5'-phosphate decarboxylase compare
HGI48_RS01930 -1.0 -2.4 GNAT family N-acetyltransferase compare
HGI48_RS04245 -1.0 -1.6 DUF4755 domain-containing protein compare
HGI48_RS05735 -1.0 -6.4 SmdB family multidrug efflux ABC transporter permease/ATP-binding protein compare
HGI48_RS03440 -1.0 -1.7 site-specific tyrosine recombinase XerD compare
HGI48_RS06735 -1.0 -1.2 protein-tyrosine-phosphatase compare
HGI48_RS13940 -1.0 -3.1 hypothetical protein compare
HGI48_RS20745 -1.0 -2.9 cell division protein FtsX compare
HGI48_RS20395 -1.0 -4.6 HTH-type transcriptional repressor FabR compare
HGI48_RS15535 -1.0 -5.4 IMP dehydrogenase compare
HGI48_RS06400 -1.0 -6.2 alpha-D-glucose phosphate-specific phosphoglucomutase compare
HGI48_RS11090 -1.0 -2.0 hypothetical protein compare
HGI48_RS09090 -1.0 -1.2 CopG family ribbon-helix-helix protein compare
HGI48_RS09520 -1.0 -4.2 arginine ABC transporter permease ArtQ compare
HGI48_RS11240 -1.0 -3.6 septum site-determining protein MinC compare
HGI48_RS16320 -1.0 -1.6 tRNA-Arg compare
HGI48_RS10705 -1.0 -2.2 type II toxin-antitoxin system RelE/ParE family toxin compare
HGI48_RS19745 -0.9 -4.4 two-component system sensor histidine kinase EnvZ compare
HGI48_RS08045 -0.9 -1.5 deferrochelatase/peroxidase EfeB compare
HGI48_RS09210 -0.9 -2.4 hypothetical protein compare
HGI48_RS07175 -0.9 -3.0 helix-turn-helix transcriptional regulator compare
HGI48_RS06135 -0.9 -2.6 esterase compare
HGI48_RS06490 -0.9 -3.9 succinate dehydrogenase flavoprotein subunit compare
HGI48_RS01635 -0.9 -3.4 outer membrane channel protein TolC compare
HGI48_RS00125 -0.9 -1.4 DUF3861 domain-containing protein compare
HGI48_RS13305 -0.9 -1.7 GhoT/OrtT family toxin compare
HGI48_RS12055 -0.9 -2.6 carboxy terminal-processing peptidase compare
HGI48_RS12330 -0.9 -3.7 acid resistance repetitive basic protein Asr compare
HGI48_RS03265 -0.9 -2.9 lipoprotein NlpI compare
HGI48_RS17345 -0.9 -2.1 YggS family pyridoxal phosphate-dependent enzyme compare
HGI48_RS11235 -0.9 -2.1 YcgL domain-containing protein compare
HGI48_RS08540 -0.9 -2.0 H-NS histone family protein compare
HGI48_RS11145 -0.9 -1.8 hypothetical protein compare
HGI48_RS21640 -0.9 -2.6 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
HGI48_RS11490 -0.9 -3.2 DNA-binding transcriptional regulator KdgR compare
HGI48_RS19750 -0.9 -2.5 two-component system response regulator OmpR compare
HGI48_RS19900 -0.9 -2.7 gluconate operon transcriptional repressor GntR compare
HGI48_RS18195 -0.9 -2.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HGI48_RS07145 -0.9 -2.1 hypothetical protein compare
HGI48_RS09730 -0.8 -3.4 imidazole glycerol phosphate synthase subunit HisH compare
HGI48_RS19800 -0.8 -2.6 DeoR/GlpR family transcriptional regulator compare
HGI48_RS13235 -0.8 -3.8 dihydroorotase compare
HGI48_RS15190 -0.8 -3.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
HGI48_RS04970 -0.8 -1.9 thymidylate synthase compare
HGI48_RS09295 -0.8 -3.7 sugar transporter compare
HGI48_RS20475 -0.8 -3.4 cell division protein ZapB compare
HGI48_RS20450 -0.8 -3.4 cell division protein FtsN compare
HGI48_RS21390 -0.8 -3.7 F0F1 ATP synthase subunit I compare
HGI48_RS09215 -0.8 -2.9 microcin C ABC transporter ATP-binding protein YejF compare
HGI48_RS09745 -0.8 -1.9 histidinol dehydrogenase compare
HGI48_RS14180 -0.8 -3.0 hydrogenase expression/formation protein HypE compare
HGI48_RS20555 -0.8 -1.6 phage tail assembly chaperone compare
HGI48_RS18595 -0.8 -3.8 GDP-mannose 4,6-dehydratase compare
HGI48_RS03655 -0.8 -1.4 MarR family transcriptional regulator compare
HGI48_RS18610 -0.8 -2.5 GDP-L-fucose synthase compare
HGI48_RS09735 -0.8 -1.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HGI48_RS06795 -0.8 -1.8 glycosyltransferase compare
HGI48_RS15580 -0.8 -2.4 cytoskeleton protein RodZ compare
HGI48_RS05455 -0.8 -1.5 pyrimidine/purine nucleoside phosphorylase compare
HGI48_RS12920 -0.8 -1.0 cell division protein ZapC compare
HGI48_RS05535 -0.8 -0.8 preprotein translocase subunit YajC compare
HGI48_RS06065 -0.8 -2.6 phosphoribosylglycinamide formyltransferase compare
HGI48_RS06830 -0.8 -2.8 GalU regulator GalF compare
HGI48_RS21220 -0.8 -3.4 ribosome-dependent GTPase TypA compare
HGI48_RS11920 -0.8 -2.0 glutamine amidotransferase compare
HGI48_RS09835 -0.8 -3.0 DUF496 family protein compare
HGI48_RS20455 -0.8 -1.5 ATP-dependent protease subunit HslV compare
HGI48_RS02410 -0.8 -1.4 stress-response protein compare
HGI48_RS03475 -0.8 -1.7 winged helix-turn-helix transcriptional regulator compare
HGI48_RS08070 -0.8 -2.4 (Fe-S)-binding protein compare
HGI48_RS11905 -0.8 -2.1 transposase compare
HGI48_RS13175 -0.7 -3.2 beta-ketoacyl-ACP synthase II compare
HGI48_RS12590 -0.7 -2.3 LapA family protein compare
HGI48_RS10715 -0.7 -2.9 acyltransferase family protein compare
HGI48_RS15805 -0.7 -1.3 pyridoxine 5'-phosphate synthase compare
HGI48_RS10140 -0.7 -1.8 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HGI48_RS20990 -0.7 -2.8 DUF1471 domain-containing protein compare
HGI48_RS13715 -0.7 -3.0 hypothetical protein compare
HGI48_RS20670 -0.7 -2.4 MCP four helix bundle domain-containing protein compare
HGI48_RS01515 -0.7 -4.7 outer membrane-stress sensor serine endopeptidase DegS compare
HGI48_RS20525 -0.7 -3.7 N-carbamoylputrescine amidase compare
HGI48_RS01210 -0.7 -3.3 phosphoribosylamine--glycine ligase compare
HGI48_RS11375 -0.7 -1.9 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
HGI48_RS13230 -0.7 -2.9 antibiotic biosynthesis monooxygenase compare
HGI48_RS14100 -0.7 -1.7 nitrate ABC transporter permease compare
HGI48_RS15430 -0.7 -2.5 amino acid ABC transporter ATP-binding protein compare
HGI48_RS10280 -0.7 -1.9 peptide-methionine (R)-S-oxide reductase MsrB compare
HGI48_RS06005 -0.7 -2.7 SDR family oxidoreductase compare
HGI48_RS04175 -0.7 -3.8 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein compare
HGI48_RS20890 -0.7 -1.9 hypothetical protein compare
HGI48_RS01650 -0.7 -3.9 3',5'-cyclic-AMP phosphodiesterase compare
HGI48_RS14210 -0.7 -1.8 HyaD/HybD family hydrogenase maturation endopeptidase compare
HGI48_RS20520 -0.7 -3.5 agmatine deiminase compare
HGI48_RS08555 -0.7 -1.0 helix-turn-helix domain-containing protein compare
HGI48_RS20930 -0.7 -1.5 hypothetical protein compare
HGI48_RS07350 -0.7 -2.1 4Fe-4S binding protein compare
HGI48_RS08320 -0.7 -1.9 S26 family signal peptidase compare
HGI48_RS15830 -0.7 -2.8 elongation factor 4 compare
HGI48_RS20085 -0.7 -1.7 uroporphyrinogen-III C-methyltransferase compare
HGI48_RS02460 -0.7 -2.9 alkyl hydroperoxide reductase subunit C compare
HGI48_RS04180 -0.7 -2.2 DUF1330 domain-containing protein compare
HGI48_RS04675 -0.7 -3.6 alpha/beta hydrolase compare
HGI48_RS05150 -0.7 -3.1 sigma E protease regulator RseP compare
HGI48_RS06090 -0.7 -1.6 arsenate reductase (glutaredoxin) compare
HGI48_RS08845 -0.7 -4.6 beta-glucosidase BglX compare
HGI48_RS12925 -0.7 -2.7 quinone-dependent dihydroorotate dehydrogenase compare
HGI48_RS12545 -0.7 -2.7 exoribonuclease II compare
HGI48_RS08525 -0.7 -0.9 DNA-damage-inducible protein J compare
HGI48_RS18445 -0.7 -3.2 erythrose-4-phosphate dehydrogenase compare
HGI48_RS06280 -0.7 -2.0 CNNM family magnesium/cobalt transport protein CorC compare
HGI48_RS12020 -0.7 -1.7 LysR family transcriptional regulator compare
HGI48_RS19235 -0.6 -2.6 large-conductance mechanosensitive channel protein MscL compare
HGI48_RS04285 -0.6 -2.5 hypothetical protein compare
HGI48_RS09740 -0.6 -2.1 histidinol-phosphate transaminase compare
HGI48_RS04435 -0.6 -0.9 PTS glucose transporter subunit IIA compare
HGI48_RS17315 -0.6 -4.5 ribonuclease R compare
HGI48_RS15445 -0.6 -1.4 hypothetical protein compare
HGI48_RS10770 -0.6 -3.0 HlyD family type I secretion periplasmic adaptor subunit compare
HGI48_RS14990 -0.6 -1.0 YjfB family protein compare
HGI48_RS17940 -0.6 -1.8 secA regulator SecM compare
HGI48_RS19430 -0.6 -1.9 sulfurtransferase complex subunit TusC compare
HGI48_RS16820 -0.6 -3.1 L-valine transporter subunit YgaH compare
HGI48_RS12605 -0.6 -4.6 oligopeptide ABC transporter substrate-binding protein OppA compare
HGI48_RS11945 -0.6 -1.7 type II toxin-antitoxin system death-on-curing family toxin compare
HGI48_RS18265 -0.6 -0.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
HGI48_RS15985 -0.6 -2.5 sulfate ABC transporter permease subunit CysT compare
HGI48_RS18805 -0.6 -2.5 hypothetical protein compare
HGI48_RS10680 -0.6 -3.5 ATP-dependent dethiobiotin synthetase BioD compare
HGI48_RS12100 -0.6 -2.0 hypothetical protein compare
HGI48_RS11915 -0.6 -3.5 methionine synthase compare
HGI48_RS16205 -0.6 -1.1 23S ribosomal RNA compare
HGI48_RS15795 -0.6 -1.6 YfhL family 4Fe-4S dicluster ferredoxin compare
HGI48_RS08465 -0.6 -0.8 transposase compare
HGI48_RS01050 -0.6 -1.0 tRNA-Thr compare
HGI48_RS04500 -0.6 -4.2 fumarate hydratase compare
HGI48_RS09355 -0.6 -1.7 LysR family transcriptional regulator compare
HGI48_RS09220 -0.6 -2.8 ABC transporter permease subunit compare
HGI48_RS16455 -0.6 -1.9 YbdD/YjiX family protein compare
HGI48_RS10500 -0.6 -2.5 23S rRNA pseudouridine(2605) synthase RluB compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola 67-19 in control experiments

For control kanamycin across organisms