Experiment setATCH209 for Dickeya dianthicola 67-19

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PDB

200 most important genes:

  gene name fitness t score description  
HGI48_RS12060 -2.6 -1.7 RNA chaperone ProQ compare
HGI48_RS15185 -2.4 -2.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
HGI48_RS05535 -2.2 -1.5 preprotein translocase subunit YajC compare
HGI48_RS18520 -2.2 -2.8 adenylosuccinate synthase compare
HGI48_RS20375 -2.2 -10.3 glutamate racemase compare
HGI48_RS18125 -2.1 -4.0 acetolactate synthase small subunit compare
HGI48_RS12630 -2.0 -2.4 pyridoxamine 5'-phosphate oxidase compare
HGI48_RS14445 -1.9 -3.4 4-phosphoerythronate dehydrogenase PdxB compare
HGI48_RS10470 -1.9 -7.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
HGI48_RS21355 -1.9 -12.5 low affinity potassium transporter Kup compare
HGI48_RS13280 -1.8 -10.2 glucan biosynthesis protein G compare
HGI48_RS10480 -1.8 -2.9 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein compare
HGI48_RS10075 -1.7 -6.1 MAPEG family protein compare
HGI48_RS15805 -1.7 -2.6 pyridoxine 5'-phosphate synthase compare
HGI48_RS05105 -1.7 -5.4 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
HGI48_RS10485 -1.7 -6.5 anthranilate synthase component 1 compare
HGI48_RS13275 -1.7 -10.0 glucans biosynthesis glucosyltransferase MdoH compare
HGI48_RS19750 -1.7 -3.5 two-component system response regulator OmpR compare
HGI48_RS10460 -1.6 -5.9 tryptophan synthase subunit alpha compare
HGI48_RS19030 -1.6 -7.5 tRNA-Gly compare
HGI48_RS04970 -1.6 -3.4 thymidylate synthase compare
HGI48_RS00045 -1.6 -7.4 oligopeptidase A compare
HGI48_RS01290 -1.5 -2.6 DNA-binding transcriptional regulator Fis compare
HGI48_RS19100 -1.5 -8.3 glucose-6-phosphate isomerase compare
HGI48_RS17805 -1.5 -2.5 YhcH/YjgK/YiaL family protein compare
HGI48_RS11245 -1.5 -3.5 septum site-determining protein MinD compare
HGI48_RS15850 -1.5 -6.9 RNA polymerase sigma factor RpoE compare
HGI48_RS20595 -1.5 -3.3 envelope stress response regulator transcription factor CpxR compare
HGI48_RS15225 -1.5 -3.8 polyphosphate kinase 1 compare
HGI48_RS17565 -1.5 -4.3 alanine racemase compare
HGI48_RS16355 -1.4 -2.5 recombinase RecA compare
HGI48_RS10465 -1.4 -5.5 tryptophan synthase subunit beta compare
HGI48_RS18195 -1.4 -5.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HGI48_RS05730 -1.4 -6.6 SmdA family multidrug ABC transporter permease/ATP-binding protein compare
HGI48_RS10475 -1.3 -3.1 anthranilate phosphoribosyltransferase compare
HGI48_RS12495 -1.3 -3.4 phage shock protein PspA compare
HGI48_RS21235 -1.3 -6.4 nitrogen regulation protein NR(I) compare
HGI48_RS08045 -1.3 -2.5 deferrochelatase/peroxidase EfeB compare
HGI48_RS21655 -1.3 -1.6 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
HGI48_RS03555 -1.3 -2.3 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
HGI48_RS03265 -1.3 -3.4 lipoprotein NlpI compare
HGI48_RS16680 -1.3 -2.2 acireductone dioxygenase compare
HGI48_RS08645 -1.2 -6.6 NAD-dependent malic enzyme compare
HGI48_RS03520 -1.2 -4.8 sugar transferase compare
HGI48_RS18835 -1.2 -1.0 nitrogen fixation protein NifM compare
HGI48_RS05735 -1.2 -7.4 SmdB family multidrug efflux ABC transporter permease/ATP-binding protein compare
HGI48_RS00960 -1.1 -2.2 YeeE/YedE family protein compare
HGI48_RS12925 -1.1 -5.1 quinone-dependent dihydroorotate dehydrogenase compare
HGI48_RS21640 -1.1 -3.0 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
HGI48_RS18375 -1.1 -3.1 inosine/xanthosine triphosphatase compare
HGI48_RS19585 -1.1 -2.2 helix-turn-helix transcriptional regulator compare
HGI48_RS14405 -1.1 -7.0 amidophosphoribosyltransferase compare
HGI48_RS06790 -1.1 -1.9 glycosyl transferase compare
HGI48_RS12055 -1.1 -2.7 carboxy terminal-processing peptidase compare
HGI48_RS18410 -1.1 -2.2 hypothetical protein compare
HGI48_RS04440 -1.1 -3.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
HGI48_RS19900 -1.1 -2.8 gluconate operon transcriptional repressor GntR compare
HGI48_RS18115 -1.0 -2.6 ilvB operon leader peptide IvbL compare
HGI48_RS13650 -1.0 -1.3 glycoside hydrolase family 104 protein compare
HGI48_RS14315 -1.0 -5.4 transcriptional regulator LrhA compare
HGI48_RS04245 -1.0 -1.6 DUF4755 domain-containing protein compare
HGI48_RS09730 -1.0 -4.0 imidazole glycerol phosphate synthase subunit HisH compare
HGI48_RS08525 -1.0 -2.0 DNA-damage-inducible protein J compare
HGI48_RS06070 -1.0 -4.7 phosphoribosylformylglycinamidine cyclo-ligase compare
HGI48_RS04395 -1.0 -3.4 Dyp-type peroxidase compare
HGI48_RS18050 -1.0 -2.1 leu operon leader peptide compare
HGI48_RS02765 -1.0 -2.2 YqjK-like family protein compare
HGI48_RS13045 -1.0 -2.4 NAD-dependent protein deacylase compare
HGI48_RS15730 -1.0 -3.9 nitrogen regulatory protein P-II compare
HGI48_RS04450 -1.0 -2.9 cysteine synthase A compare
HGI48_RS11530 -1.0 -2.1 tRNA 2-thiouridine(34) synthase MnmA compare
HGI48_RS21230 -1.0 -4.4 nitrogen regulation protein NR(II) compare
HGI48_RS12570 -1.0 -1.8 osmotically-inducible lipoprotein OsmB compare
HGI48_RS01210 -1.0 -5.4 phosphoribosylamine--glycine ligase compare
HGI48_RS19055 -1.0 -1.2 elongation factor P--(R)-beta-lysine ligase compare
HGI48_RS06400 -1.0 -5.4 alpha-D-glucose phosphate-specific phosphoglucomutase compare
HGI48_RS00265 -1.0 -2.1 mannitol-1-phosphate 5-dehydrogenase compare
HGI48_RS12590 -0.9 -2.6 LapA family protein compare
HGI48_RS10200 -0.9 -3.3 non-heme ferritin compare
HGI48_RS06280 -0.9 -2.8 CNNM family magnesium/cobalt transport protein CorC compare
HGI48_RS06120 -0.9 -3.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HGI48_RS20745 -0.9 -2.4 cell division protein FtsX compare
HGI48_RS19070 -0.9 -2.6 fumarate reductase subunit FrdC compare
HGI48_RS17355 -0.9 -2.3 YggT family protein compare
HGI48_RS06495 -0.9 -3.4 succinate dehydrogenase iron-sulfur subunit compare
HGI48_RS08960 -0.9 -2.7 hypothetical protein compare
HGI48_RS10320 -0.9 -1.4 exodeoxyribonuclease III compare
HGI48_RS02290 -0.9 -3.1 hypothetical protein compare
HGI48_RS10975 -0.9 -2.5 redox-regulated ATPase YchF compare
HGI48_RS17245 -0.9 -2.3 iron-sulfur cluster repair protein YtfE compare
HGI48_RS15560 -0.9 -2.3 outer membrane protein assembly factor BamB compare
HGI48_RS01650 -0.9 -4.9 3',5'-cyclic-AMP phosphodiesterase compare
HGI48_RS08165 -0.9 -2.1 GNAT family N-acetyltransferase compare
HGI48_RS08295 -0.9 -1.6 IS481 family transposase compare
HGI48_RS18265 -0.9 -1.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
HGI48_RS06270 -0.9 -2.5 glutamate/aspartate ABC transporter substrate-binding protein compare
HGI48_RS00830 -0.8 -2.3 uridine phosphorylase compare
HGI48_RS18070 -0.8 -2.8 3-isopropylmalate dehydratase small subunit compare
HGI48_RS18075 -0.8 -1.6 siderophore-interacting protein compare
HGI48_RS08540 -0.8 -2.3 H-NS histone family protein compare
HGI48_RS07725 -0.8 -2.7 MetQ/NlpA family ABC transporter substrate-binding protein compare
HGI48_RS17320 -0.8 -2.8 nitric oxide-sensing transcriptional repressor NsrR compare
HGI48_RS20450 -0.8 -3.0 cell division protein FtsN compare
HGI48_RS15535 -0.8 -4.3 IMP dehydrogenase compare
HGI48_RS01980 -0.8 -3.0 hypothetical protein compare
HGI48_RS20455 -0.8 -2.1 ATP-dependent protease subunit HslV compare
HGI48_RS15190 -0.8 -3.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
HGI48_RS09735 -0.8 -1.4 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HGI48_RS16820 -0.8 -3.5 L-valine transporter subunit YgaH compare
HGI48_RS03585 -0.8 -2.9 hypothetical protein compare
HGI48_RS01515 -0.8 -4.8 outer membrane-stress sensor serine endopeptidase DegS compare
HGI48_RS10315 -0.8 -1.7 DUF1496 domain-containing protein compare
HGI48_RS05795 -0.8 -3.8 efflux RND transporter periplasmic adaptor subunit compare
HGI48_RS04795 -0.8 -1.7 hypothetical protein compare
HGI48_RS04315 -0.8 -3.8 outer membrane protein assembly factor BamE compare
HGI48_RS01195 -0.8 -3.6 YjaG family protein compare
HGI48_RS20475 -0.8 -2.8 cell division protein ZapB compare
HGI48_RS17770 -0.8 -1.0 DeoR/GlpR transcriptional regulator compare
HGI48_RS08555 -0.8 -1.2 helix-turn-helix domain-containing protein compare
HGI48_RS03135 -0.8 -1.4 malate dehydrogenase compare
HGI48_RS06830 -0.8 -3.2 GalU regulator GalF compare
HGI48_RS17620 -0.8 -1.8 hypothetical protein compare
HGI48_RS02025 -0.7 -1.4 DNA-binding transcriptional regulator compare
HGI48_RS21720 -0.7 -2.1 membrane protein insertion efficiency factor YidD compare
HGI48_RS18795 -0.7 -1.5 flavodoxin compare
HGI48_RS11545 -0.7 -1.9 two-component system response regulator PhoP compare
HGI48_RS20525 -0.7 -4.1 N-carbamoylputrescine amidase compare
HGI48_RS15795 -0.7 -2.5 YfhL family 4Fe-4S dicluster ferredoxin compare
HGI48_RS08330 -0.7 -2.6 DNA phosphorothioation-dependent restriction protein DptF compare
HGI48_RS20270 -0.7 -4.1 ketol-acid reductoisomerase compare
HGI48_RS06440 -0.7 -1.4 YbfA family protein compare
HGI48_RS12355 -0.7 -1.9 LUD domain-containing protein compare
HGI48_RS06435 -0.7 -1.6 K(+)-transporting ATPase subunit F compare
HGI48_RS10730 -0.7 -1.8 hypothetical protein compare
HGI48_RS02700 -0.7 -2.3 FxsA family protein compare
HGI48_RS10060 -0.7 -1.5 hypothetical protein compare
HGI48_RS06490 -0.7 -2.9 succinate dehydrogenase flavoprotein subunit compare
HGI48_RS13305 -0.7 -1.4 GhoT/OrtT family toxin compare
HGI48_RS01670 -0.7 -2.6 NAD(P)H-dependent oxidoreductase compare
HGI48_RS12545 -0.7 -2.8 exoribonuclease II compare
HGI48_RS07145 -0.7 -1.2 hypothetical protein compare
HGI48_RS10710 -0.7 -3.3 ATP-binding protein compare
HGI48_RS11915 -0.7 -3.4 methionine synthase compare
HGI48_RS15980 -0.7 -4.1 sulfate ABC transporter permease subunit CysW compare
HGI48_RS11505 -0.7 -3.6 protease HtpX compare
HGI48_RS17195 -0.7 -1.4 hypothetical protein compare
HGI48_RS08800 -0.7 -2.1 peptidase T compare
HGI48_RS18615 -0.7 -2.2 hypothetical protein compare
HGI48_RS08545 -0.7 -3.1 helix-turn-helix transcriptional regulator compare
HGI48_RS13535 -0.7 -1.8 anti-sigma-28 factor FlgM compare
HGI48_RS10400 -0.7 -3.4 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF compare
HGI48_RS06485 -0.7 -2.4 succinate dehydrogenase membrane anchor subunit compare
HGI48_RS20520 -0.7 -3.1 agmatine deiminase compare
HGI48_RS04800 -0.7 -1.9 hypothetical protein compare
HGI48_RS09210 -0.7 -1.5 hypothetical protein compare
HGI48_RS20035 -0.7 -2.7 DNA helicase II compare
HGI48_RS06295 -0.7 -3.5 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
HGI48_RS02010 -0.7 -1.7 AlpA family transcriptional regulator compare
HGI48_RS21025 -0.7 -3.0 NAD(P)/FAD-dependent oxidoreductase compare
HGI48_RS06570 -0.7 -3.9 cell division protein CpoB compare
HGI48_RS13235 -0.7 -3.9 dihydroorotase compare
HGI48_RS17185 -0.7 -2.2 glycerol-3-phosphate 1-O-acyltransferase PlsY compare
HGI48_RS11240 -0.7 -2.1 septum site-determining protein MinC compare
HGI48_RS18620 -0.7 -2.2 glycosyltransferase compare
HGI48_RS11490 -0.6 -2.3 DNA-binding transcriptional regulator KdgR compare
HGI48_RS10500 -0.6 -3.0 23S rRNA pseudouridine(2605) synthase RluB compare
HGI48_RS08775 -0.6 -1.7 ABC transporter ATP-binding protein compare
HGI48_RS04870 -0.6 -1.6 hypothetical protein compare
HGI48_RS09960 -0.6 -3.1 hypothetical protein compare
HGI48_RS02770 -0.6 -1.9 phage holin family protein compare
HGI48_RS04755 -0.6 -1.2 phosphotransferase compare
HGI48_RS09220 -0.6 -3.1 ABC transporter permease subunit compare
HGI48_RS07170 -0.6 -2.8 helix-turn-helix transcriptional regulator compare
HGI48_RS00240 -0.6 -2.7 ATP-binding cassette domain-containing protein compare
HGI48_RS15580 -0.6 -1.9 cytoskeleton protein RodZ compare
HGI48_RS10550 -0.6 -1.2 electron transport complex subunit E compare
HGI48_RS13585 -0.6 -3.7 chemotaxis protein CheW compare
HGI48_RS14680 -0.6 -0.9 membrane protein YpdK compare
HGI48_RS14050 -0.6 -2.9 ABC transporter substrate-binding protein compare
HGI48_RS17705 -0.6 -0.9 LacI family DNA-binding transcriptional regulator compare
HGI48_RS03035 -0.6 -1.8 GPW/gp25 family protein compare
HGI48_RS04735 -0.6 -1.6 hypothetical protein compare
HGI48_RS15170 -0.6 -1.8 DoxX family protein compare
HGI48_RS06515 -0.6 -1.4 succinate--CoA ligase subunit alpha compare
HGI48_RS12580 -0.6 -2.9 orotidine-5'-phosphate decarboxylase compare
HGI48_RS13390 -0.6 -3.1 flagellar filament capping protein FliD compare
HGI48_RS20400 -0.6 -2.0 Si-specific NAD(P)(+) transhydrogenase compare
HGI48_RS20565 -0.6 -2.3 IS3 family transposase compare
HGI48_RS08605 -0.6 -1.8 DUF3168 domain-containing protein compare
HGI48_RS19745 -0.6 -2.6 two-component system sensor histidine kinase EnvZ compare
HGI48_RS17130 -0.6 -1.2 FlxA-like family protein compare
HGI48_RS11645 -0.6 -1.2 CesT family type III secretion system chaperone compare
HGI48_RS04350 -0.6 -1.5 YaiI/YqxD family protein compare
HGI48_RS20395 -0.6 -2.9 HTH-type transcriptional repressor FabR compare
HGI48_RS03440 -0.6 -1.2 site-specific tyrosine recombinase XerD compare
HGI48_RS11020 -0.6 -1.1 hypothetical protein compare
HGI48_RS19235 -0.6 -2.9 large-conductance mechanosensitive channel protein MscL compare
HGI48_RS20305 -0.6 -1.3 acetolactate synthase 2 small subunit compare
HGI48_RS09225 -0.6 -2.9 microcin C ABC transporter permease YejB compare
HGI48_RS06060 -0.6 -1.5 HTH-type transcriptional regulator GalS compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola 67-19 in control experiments

For control kanamycin across organisms