Experiment setATCH208 for Dickeya dianthicola 67-19

Compare to:

PDB

200 most important genes:

  gene name fitness t score description  
HGI48_RS20375 -2.4 -12.7 glutamate racemase compare
HGI48_RS10480 -2.1 -2.8 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein compare
HGI48_RS14580 -2.0 -2.8 tRNA-Arg compare
HGI48_RS11020 -2.0 -2.2 hypothetical protein compare
HGI48_RS20595 -1.9 -5.2 envelope stress response regulator transcription factor CpxR compare
HGI48_RS05105 -1.9 -6.7 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
HGI48_RS03265 -1.9 -5.3 lipoprotein NlpI compare
HGI48_RS05260 -1.8 -1.8 transposase compare
HGI48_RS13275 -1.8 -11.3 glucans biosynthesis glucosyltransferase MdoH compare
HGI48_RS18520 -1.8 -2.4 adenylosuccinate synthase compare
HGI48_RS00785 -1.8 -3.3 rhodanese-like domain-containing protein compare
HGI48_RS21475 -1.8 -3.0 acyl carrier protein compare
HGI48_RS21355 -1.7 -12.0 low affinity potassium transporter Kup compare
HGI48_RS06480 -1.7 -3.9 succinate dehydrogenase cytochrome b556 subunit compare
HGI48_RS10475 -1.7 -4.7 anthranilate phosphoribosyltransferase compare
HGI48_RS10485 -1.7 -7.1 anthranilate synthase component 1 compare
HGI48_RS10470 -1.7 -4.6 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
HGI48_RS08555 -1.6 -1.9 helix-turn-helix domain-containing protein compare
HGI48_RS13280 -1.6 -9.2 glucan biosynthesis protein G compare
HGI48_RS18195 -1.6 -4.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HGI48_RS10075 -1.6 -6.3 MAPEG family protein compare
HGI48_RS02765 -1.6 -1.6 YqjK-like family protein compare
HGI48_RS04435 -1.6 -1.6 PTS glucose transporter subunit IIA compare
HGI48_RS19030 -1.6 -7.6 tRNA-Gly compare
HGI48_RS11245 -1.6 -4.4 septum site-determining protein MinD compare
HGI48_RS09715 -1.6 -3.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HGI48_RS16355 -1.6 -2.3 recombinase RecA compare
HGI48_RS20015 -1.6 -3.9 thioesterase family protein compare
HGI48_RS05730 -1.6 -7.7 SmdA family multidrug ABC transporter permease/ATP-binding protein compare
HGI48_RS17355 -1.6 -3.0 YggT family protein compare
HGI48_RS10465 -1.5 -5.9 tryptophan synthase subunit beta compare
HGI48_RS09210 -1.5 -2.7 hypothetical protein compare
HGI48_RS17565 -1.5 -4.9 alanine racemase compare
HGI48_RS19100 -1.5 -7.9 glucose-6-phosphate isomerase compare
HGI48_RS12630 -1.5 -1.0 pyridoxamine 5'-phosphate oxidase compare
HGI48_RS16820 -1.5 -3.2 L-valine transporter subunit YgaH compare
HGI48_RS15190 -1.5 -5.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
HGI48_RS04970 -1.5 -2.9 thymidylate synthase compare
HGI48_RS10460 -1.5 -4.1 tryptophan synthase subunit alpha compare
HGI48_RS08645 -1.5 -7.1 NAD-dependent malic enzyme compare
HGI48_RS03135 -1.4 -2.1 malate dehydrogenase compare
HGI48_RS12060 -1.4 -1.1 RNA chaperone ProQ compare
HGI48_RS18835 -1.4 -1.1 nitrogen fixation protein NifM compare
HGI48_RS13650 -1.4 -1.6 glycoside hydrolase family 104 protein compare
HGI48_RS20930 -1.3 -2.7 hypothetical protein compare
HGI48_RS14445 -1.3 -1.8 4-phosphoerythronate dehydrogenase PdxB compare
HGI48_RS05455 -1.3 -2.9 pyrimidine/purine nucleoside phosphorylase compare
HGI48_RS15850 -1.3 -6.5 RNA polymerase sigma factor RpoE compare
HGI48_RS18375 -1.3 -4.2 inosine/xanthosine triphosphatase compare
HGI48_RS05735 -1.3 -7.9 SmdB family multidrug efflux ABC transporter permease/ATP-binding protein compare
HGI48_RS00045 -1.3 -6.6 oligopeptidase A compare
HGI48_RS18145 -1.3 -1.4 hypothetical protein compare
HGI48_RS06790 -1.2 -2.3 glycosyl transferase compare
HGI48_RS17805 -1.2 -1.6 YhcH/YjgK/YiaL family protein compare
HGI48_RS15225 -1.2 -2.2 polyphosphate kinase 1 compare
HGI48_RS01500 -1.2 -3.6 lipid asymmetry maintenance protein MlaB compare
HGI48_RS00775 -1.2 -1.6 divergent polysaccharide deacetylase family protein compare
HGI48_RS12495 -1.1 -2.8 phage shock protein PspA compare
HGI48_RS11905 -1.1 -2.0 transposase compare
HGI48_RS01290 -1.1 -2.6 DNA-binding transcriptional regulator Fis compare
HGI48_RS04735 -1.1 -3.4 hypothetical protein compare
HGI48_RS06495 -1.1 -5.0 succinate dehydrogenase iron-sulfur subunit compare
HGI48_RS12055 -1.1 -2.8 carboxy terminal-processing peptidase compare
HGI48_RS21235 -1.1 -5.3 nitrogen regulation protein NR(I) compare
HGI48_RS06485 -1.1 -3.7 succinate dehydrogenase membrane anchor subunit compare
HGI48_RS06065 -1.1 -3.1 phosphoribosylglycinamide formyltransferase compare
HGI48_RS09835 -1.1 -4.4 DUF496 family protein compare
HGI48_RS09460 -1.0 -1.3 glutaredoxin, GrxA family compare
HGI48_RS20475 -1.0 -2.7 cell division protein ZapB compare
HGI48_RS06400 -1.0 -6.0 alpha-D-glucose phosphate-specific phosphoglucomutase compare
HGI48_RS06120 -1.0 -3.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HGI48_RS10035 -1.0 -2.4 hypothetical protein compare
HGI48_RS19900 -1.0 -2.9 gluconate operon transcriptional repressor GntR compare
HGI48_RS21230 -1.0 -4.9 nitrogen regulation protein NR(II) compare
HGI48_RS20190 -1.0 -2.1 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
HGI48_RS14405 -1.0 -6.7 amidophosphoribosyltransferase compare
HGI48_RS12570 -0.9 -2.3 osmotically-inducible lipoprotein OsmB compare
HGI48_RS01650 -0.9 -5.6 3',5'-cyclic-AMP phosphodiesterase compare
HGI48_RS18340 -0.9 -2.5 homoserine kinase compare
HGI48_RS10200 -0.9 -2.6 non-heme ferritin compare
HGI48_RS11240 -0.9 -1.9 septum site-determining protein MinC compare
HGI48_RS17445 -0.9 -1.2 PTS lactose/cellobiose transporter subunit IIA compare
HGI48_RS10550 -0.9 -1.8 electron transport complex subunit E compare
HGI48_RS06735 -0.9 -1.5 protein-tyrosine-phosphatase compare
HGI48_RS11915 -0.9 -5.0 methionine synthase compare
HGI48_RS13540 -0.9 -2.8 flagellar export chaperone FlgN compare
HGI48_RS00925 -0.9 -3.4 3'-5' ssDNA/RNA exonuclease TatD compare
HGI48_RS08345 -0.9 -2.0 restriction endonuclease compare
HGI48_RS18075 -0.9 -1.8 siderophore-interacting protein compare
HGI48_RS06550 -0.9 -2.1 colicin uptake protein TolR compare
HGI48_RS09735 -0.9 -2.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HGI48_RS12925 -0.9 -3.5 quinone-dependent dihydroorotate dehydrogenase compare
HGI48_RS09300 -0.9 -2.0 3-oxoacyl-ACP synthase compare
HGI48_RS06830 -0.9 -3.0 GalU regulator GalF compare
HGI48_RS09730 -0.9 -3.5 imidazole glycerol phosphate synthase subunit HisH compare
HGI48_RS07175 -0.8 -2.9 helix-turn-helix transcriptional regulator compare
HGI48_RS04270 -0.8 -2.3 hypothetical protein compare
HGI48_RS21655 -0.8 -1.2 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
HGI48_RS04175 -0.8 -3.9 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein compare
HGI48_RS11530 -0.8 -1.5 tRNA 2-thiouridine(34) synthase MnmA compare
HGI48_RS12960 -0.8 -1.6 nicotinate phosphoribosyltransferase compare
HGI48_RS01515 -0.8 -5.2 outer membrane-stress sensor serine endopeptidase DegS compare
HGI48_RS21640 -0.8 -2.7 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
HGI48_RS16360 -0.8 -2.8 nicotinamide-nucleotide amidase compare
HGI48_RS06455 -0.8 -1.4 type 2 GTP cyclohydrolase I compare
HGI48_RS07605 -0.8 -2.4 hypothetical protein compare
HGI48_RS01210 -0.8 -4.5 phosphoribosylamine--glycine ligase compare
HGI48_RS15445 -0.8 -1.8 hypothetical protein compare
HGI48_RS10995 -0.8 -1.7 IS21 family transposase compare
HGI48_RS02165 -0.8 -3.3 type-1Ba cytolytic delta-endotoxin compare
HGI48_RS12590 -0.8 -2.6 LapA family protein compare
HGI48_RS04775 -0.8 -2.4 nucleotidyltransferase family protein compare
HGI48_RS14210 -0.8 -1.6 HyaD/HybD family hydrogenase maturation endopeptidase compare
HGI48_RS09265 -0.8 -2.2 1-phosphofructokinase compare
HGI48_RS01300 -0.8 -2.1 50S ribosomal protein L11 methyltransferase compare
HGI48_RS21205 -0.8 -2.3 fatty acid biosynthesis protein FabY compare
HGI48_RS19720 -0.8 -1.4 intracellular growth attenuator family protein compare
HGI48_RS06510 -0.8 -1.6 ADP-forming succinate--CoA ligase subunit beta compare
HGI48_RS15470 -0.8 -1.7 type II secretion system minor pseudopilin GspI compare
HGI48_RS01670 -0.8 -3.0 NAD(P)H-dependent oxidoreductase compare
HGI48_RS21295 -0.8 -2.7 23S ribosomal RNA compare
HGI48_RS09295 -0.8 -3.7 sugar transporter compare
HGI48_RS14525 -0.8 -2.0 penicillin-insensitive murein endopeptidase compare
HGI48_RS19430 -0.7 -1.6 sulfurtransferase complex subunit TusC compare
HGI48_RS17770 -0.7 -1.1 DeoR/GlpR transcriptional regulator compare
HGI48_RS10090 -0.7 -1.5 dihydroneopterin triphosphate diphosphatase compare
HGI48_RS00130 -0.7 -3.2 glucokinase compare
HGI48_RS11545 -0.7 -2.3 two-component system response regulator PhoP compare
HGI48_RS14100 -0.7 -1.4 nitrate ABC transporter permease compare
HGI48_RS17345 -0.7 -2.1 YggS family pyridoxal phosphate-dependent enzyme compare
HGI48_RS15325 -0.7 -1.2 hypothetical protein compare
HGI48_RS08300 -0.7 -1.7 CcdB family protein compare
HGI48_RS11950 -0.7 -2.0 type II toxin-antitoxin system prevent-host-death family antitoxin compare
HGI48_RS11585 -0.7 -1.3 hypothetical protein compare
HGI48_RS04730 -0.7 -2.8 hypothetical protein compare
HGI48_RS04315 -0.7 -2.9 outer membrane protein assembly factor BamE compare
HGI48_RS18020 -0.7 -1.6 division/cell wall cluster transcriptional repressor MraZ compare
HGI48_RS01435 -0.7 -1.9 PTS IIA-like nitrogen regulatory protein PtsN compare
HGI48_RS20520 -0.7 -3.8 agmatine deiminase compare
HGI48_RS02775 -0.7 -1.0 DUF883 domain-containing protein compare
HGI48_RS20395 -0.7 -3.0 HTH-type transcriptional repressor FabR compare
HGI48_RS00600 -0.7 -2.5 ABC transporter ATP-binding protein compare
HGI48_RS20545 -0.7 -2.0 NUDIX domain-containing protein compare
HGI48_RS11910 -0.7 -3.1 DUF1852 domain-containing protein compare
HGI48_RS15730 -0.7 -2.8 nitrogen regulatory protein P-II compare
HGI48_RS11595 -0.7 -1.0 damage-inducible protein J compare
HGI48_RS19820 -0.7 -2.0 DUF4276 family protein compare
HGI48_RS03655 -0.7 -1.2 MarR family transcriptional regulator compare
HGI48_RS16060 -0.7 -3.3 polynucleotide adenylyltransferase PcnB compare
HGI48_RS07115 -0.7 -1.5 EexN family lipoprotein compare
HGI48_RS15960 -0.7 -1.8 helix-turn-helix domain-containing protein compare
HGI48_RS19435 -0.7 -1.1 sulfurtransferase complex subunit TusD compare
HGI48_RS17530 -0.7 -1.2 RES family NAD+ phosphorylase compare
HGI48_RS00780 -0.7 -1.8 murein hydrolase activator EnvC compare
HGI48_RS02410 -0.7 -1.4 stress-response protein compare
HGI48_RS02580 -0.7 -2.0 Cd(II)/Pb(II)-responsive transcriptional regulator compare
HGI48_RS12215 -0.7 -1.5 GpE family phage tail protein compare
HGI48_RS04675 -0.7 -2.6 alpha/beta hydrolase compare
HGI48_RS19745 -0.7 -3.1 two-component system sensor histidine kinase EnvZ compare
HGI48_RS12595 -0.7 -2.7 phosphatidylglycerophosphatase B compare
HGI48_RS02065 -0.7 -1.8 DUF1778 domain-containing protein compare
HGI48_RS06805 -0.7 -2.5 hypothetical protein compare
HGI48_RS04395 -0.7 -2.7 Dyp-type peroxidase compare
HGI48_RS03520 -0.7 -2.9 sugar transferase compare
HGI48_RS13235 -0.7 -3.6 dihydroorotase compare
HGI48_RS04835 -0.7 -1.2 hypothetical protein compare
HGI48_RS07925 -0.7 -1.9 TetR/AcrR family transcriptional regulator compare
HGI48_RS18500 -0.6 -1.7 YqgE/AlgH family protein compare
HGI48_RS03440 -0.6 -1.1 site-specific tyrosine recombinase XerD compare
HGI48_RS02330 -0.6 -2.2 hypothetical protein compare
HGI48_RS16520 -0.6 -2.1 alpha/beta hydrolase compare
HGI48_RS10125 -0.6 -2.9 zinc ABC transporter ATP-binding protein ZnuC compare
HGI48_RS08385 -0.6 -1.3 helix-turn-helix transcriptional regulator compare
HGI48_RS08655 -0.6 -2.5 CidB/LrgB family autolysis modulator compare
HGI48_RS08605 -0.6 -1.8 DUF3168 domain-containing protein compare
HGI48_RS00240 -0.6 -3.0 ATP-binding cassette domain-containing protein compare
HGI48_RS02595 -0.6 -3.5 undecaprenyl-phosphate glucose phosphotransferase compare
HGI48_RS12330 -0.6 -2.5 acid resistance repetitive basic protein Asr compare
HGI48_RS13780 -0.6 -2.6 LysE family transporter compare
HGI48_RS01160 -0.6 -1.4 HesA/MoeB/ThiF family protein compare
HGI48_RS13015 -0.6 -1.7 EAL domain-containing protein compare
HGI48_RS10390 -0.6 -3.3 oligopeptide ABC transporter permease OppC compare
HGI48_RS06795 -0.6 -1.4 glycosyltransferase compare
HGI48_RS06490 -0.6 -3.0 succinate dehydrogenase flavoprotein subunit compare
HGI48_RS20035 -0.6 -1.8 DNA helicase II compare
HGI48_RS20995 -0.6 -1.5 FadR family transcriptional regulator compare
HGI48_RS20220 -0.6 -1.2 thioredoxin TrxA compare
HGI48_RS14315 -0.6 -3.3 transcriptional regulator LrhA compare
HGI48_RS11090 -0.6 -1.3 hypothetical protein compare
HGI48_RS19750 -0.6 -1.6 two-component system response regulator OmpR compare
HGI48_RS15750 -0.6 -4.9 phosphoribosylformylglycinamidine synthase compare
HGI48_RS01150 -0.6 -1.7 thiazole synthase compare
HGI48_RS13535 -0.6 -1.9 anti-sigma-28 factor FlgM compare
HGI48_RS10150 -0.6 -1.6 hypothetical protein compare
HGI48_RS15615 -0.6 -0.9 Fe-S cluster assembly protein IscX compare
HGI48_RS20270 -0.6 -3.5 ketol-acid reductoisomerase compare
HGI48_RS11550 -0.6 -4.0 two-component system sensor histidine kinase PhoQ compare
HGI48_RS15535 -0.6 -3.6 IMP dehydrogenase compare
HGI48_RS02020 -0.6 -2.2 type II toxin-antitoxin system RelE/ParE family toxin compare
HGI48_RS18825 -0.6 -1.7 S8 family serine peptidase compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola 67-19 in control experiments

For control kanamycin across organisms