Experiment setATCH206 for Dickeya dianthicola 67-19

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
HGI48_RS12630 -2.8 -3.2 pyridoxamine 5'-phosphate oxidase compare
HGI48_RS00790 -2.1 -2.4 protein-export chaperone SecB compare
HGI48_RS16355 -2.0 -3.3 recombinase RecA compare
HGI48_RS03440 -1.8 -2.2 site-specific tyrosine recombinase XerD compare
HGI48_RS17775 -1.7 -4.6 D-threonate 4-phosphate dehydrogenase compare
HGI48_RS00955 -1.7 -1.6 helix-turn-helix transcriptional regulator compare
HGI48_RS03265 -1.7 -4.6 lipoprotein NlpI compare
HGI48_RS20045 -1.7 -2.7 tyrosine recombinase XerC compare
HGI48_RS17345 -1.6 -3.8 YggS family pyridoxal phosphate-dependent enzyme compare
HGI48_RS04395 -1.6 -4.0 Dyp-type peroxidase compare
HGI48_RS14285 -1.6 -2.2 NADH-quinone oxidoreductase subunit NuoG compare
HGI48_RS19090 -1.5 -2.4 EF-P beta-lysylation protein EpmB compare
HGI48_RS21655 -1.5 -2.0 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
HGI48_RS12060 -1.5 -0.9 RNA chaperone ProQ compare
HGI48_RS16050 -1.5 -1.8 RNA polymerase-binding protein DksA compare
HGI48_RS11530 -1.4 -2.6 tRNA 2-thiouridine(34) synthase MnmA compare
HGI48_RS14680 -1.4 -2.3 membrane protein YpdK compare
HGI48_RS13275 -1.3 -9.9 glucans biosynthesis glucosyltransferase MdoH compare
HGI48_RS13280 -1.3 -9.0 glucan biosynthesis protein G compare
HGI48_RS14445 -1.3 -2.4 4-phosphoerythronate dehydrogenase PdxB compare
HGI48_RS14270 -1.3 -2.2 NADH-quinone oxidoreductase subunit J compare
HGI48_RS17565 -1.3 -4.4 alanine racemase compare
HGI48_RS21220 -1.3 -5.0 ribosome-dependent GTPase TypA compare
HGI48_RS13200 -1.2 -3.4 phosphate acyltransferase PlsX compare
HGI48_RS10550 -1.2 -2.5 electron transport complex subunit E compare
HGI48_RS13650 -1.2 -1.6 glycoside hydrolase family 104 protein compare
HGI48_RS19055 -1.2 -1.9 elongation factor P--(R)-beta-lysine ligase compare
HGI48_RS15805 -1.2 -2.1 pyridoxine 5'-phosphate synthase compare
HGI48_RS10075 -1.2 -5.9 MAPEG family protein compare
HGI48_RS03135 -1.1 -1.8 malate dehydrogenase compare
HGI48_RS19815 -1.1 -2.4 glycerol-3-phosphate dehydrogenase compare
HGI48_RS10140 -1.1 -2.7 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HGI48_RS16945 -1.1 -1.4 RNA polymerase sigma factor RpoS compare
HGI48_RS19785 -1.1 -1.7 Fe-S biogenesis protein NfuA compare
HGI48_RS19800 -1.1 -3.2 DeoR/GlpR family transcriptional regulator compare
HGI48_RS14260 -1.1 -1.9 NADH-quinone oxidoreductase subunit L compare
HGI48_RS07925 -1.1 -5.0 TetR/AcrR family transcriptional regulator compare
HGI48_RS08300 -1.1 -3.3 CcdB family protein compare
HGI48_RS16100 -1.1 -3.4 hypoxanthine phosphoribosyltransferase compare
HGI48_RS12055 -1.1 -3.2 carboxy terminal-processing peptidase compare
HGI48_RS09310 -1.1 -1.5 acyl carrier protein compare
HGI48_RS12570 -1.1 -2.8 osmotically-inducible lipoprotein OsmB compare
HGI48_RS15470 -1.1 -2.8 type II secretion system minor pseudopilin GspI compare
HGI48_RS04435 -1.1 -1.5 PTS glucose transporter subunit IIA compare
HGI48_RS06485 -1.0 -3.2 succinate dehydrogenase membrane anchor subunit compare
HGI48_RS20070 -1.0 -2.5 class I adenylate cyclase compare
HGI48_RS06480 -1.0 -2.7 succinate dehydrogenase cytochrome b556 subunit compare
HGI48_RS01590 -1.0 -1.3 divisome-associated lipoprotein YraP compare
HGI48_RS02010 -1.0 -2.5 AlpA family transcriptional regulator compare
HGI48_RS13545 -1.0 -2.2 flagellar protein FlhE compare
HGI48_RS06475 -1.0 -2.4 citrate synthase compare
HGI48_RS20595 -1.0 -3.6 envelope stress response regulator transcription factor CpxR compare
HGI48_RS08580 -1.0 -2.3 type VI secretion system tip protein VgrG compare
HGI48_RS00755 -0.9 -2.7 putative lipopolysaccharide heptosyltransferase III compare
HGI48_RS11490 -0.9 -3.4 DNA-binding transcriptional regulator KdgR compare
HGI48_RS13210 -0.9 -3.0 23S rRNA accumulation protein YceD compare
HGI48_RS18020 -0.9 -1.4 division/cell wall cluster transcriptional repressor MraZ compare
HGI48_RS13015 -0.9 -2.7 EAL domain-containing protein compare
HGI48_RS03555 -0.9 -1.7 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
HGI48_RS04315 -0.9 -4.0 outer membrane protein assembly factor BamE compare
HGI48_RS10500 -0.9 -4.0 23S rRNA pseudouridine(2605) synthase RluB compare
HGI48_RS04970 -0.9 -2.3 thymidylate synthase compare
HGI48_RS10575 -0.9 -1.4 electron transport complex subunit RsxA compare
HGI48_RS03325 -0.9 -2.6 purine-nucleoside phosphorylase compare
HGI48_RS04355 -0.9 -1.5 oxygen-dependent coproporphyrinogen oxidase compare
HGI48_RS04305 -0.9 -1.8 type II toxin-antitoxin system RatA family toxin compare
HGI48_RS03900 -0.9 -2.1 hypothetical protein compare
HGI48_RS01290 -0.9 -1.6 DNA-binding transcriptional regulator Fis compare
HGI48_RS05535 -0.9 -1.0 preprotein translocase subunit YajC compare
HGI48_RS12970 -0.9 -6.0 porin compare
HGI48_RS14525 -0.8 -2.1 penicillin-insensitive murein endopeptidase compare
HGI48_RS20600 -0.8 -2.7 envelope stress sensor histidine kinase CpxA compare
HGI48_RS01845 -0.8 -2.2 ABC transporter permease compare
HGI48_RS21475 -0.8 -2.1 acyl carrier protein compare
HGI48_RS03185 -0.8 -2.2 transcription elongation factor GreA compare
HGI48_RS17890 -0.8 -2.5 carboxylating nicotinate-nucleotide diphosphorylase compare
HGI48_RS05035 -0.8 -3.5 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA compare
HGI48_RS01955 -0.8 -3.2 leucyl aminopeptidase compare
HGI48_RS19720 -0.8 -1.8 intracellular growth attenuator family protein compare
HGI48_RS16410 -0.8 -3.1 ABC transporter permease compare
HGI48_RS02940 -0.8 -2.9 phosphoadenosine phosphosulfate reductase family protein compare
HGI48_RS14300 -0.8 -1.5 NADH-quinone oxidoreductase subunit C/D compare
HGI48_RS12995 -0.8 -2.6 MBL fold metallo-hydrolase compare
HGI48_RS00655 -0.8 -2.1 L-Ala-D/L-Glu epimerase compare
HGI48_RS12660 -0.8 -2.4 lactoylglutathione lyase compare
HGI48_RS15325 -0.8 -1.7 hypothetical protein compare
HGI48_RS05355 -0.8 -1.9 hypothetical protein compare
HGI48_RS14280 -0.8 -1.5 NADH-quinone oxidoreductase subunit NuoH compare
HGI48_RS04795 -0.8 -2.3 hypothetical protein compare
HGI48_RS08355 -0.8 -1.4 IS481 family transposase compare
HGI48_RS14350 -0.7 -2.7 acetate kinase compare
HGI48_RS05640 -0.7 -2.4 protoheme IX farnesyltransferase compare
HGI48_RS07350 -0.7 -2.0 4Fe-4S binding protein compare
HGI48_RS19750 -0.7 -1.8 two-component system response regulator OmpR compare
HGI48_RS04175 -0.7 -4.3 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein compare
HGI48_RS06495 -0.7 -3.6 succinate dehydrogenase iron-sulfur subunit compare
HGI48_RS10885 -0.7 -2.4 superoxide dismutase family protein compare
HGI48_RS00095 -0.7 -1.1 PAS domain-containing protein compare
HGI48_RS03450 -0.7 -3.8 single-stranded-DNA-specific exonuclease RecJ compare
HGI48_RS05560 -0.7 -1.0 transcriptional regulator NrdR compare
HGI48_RS21020 -0.7 -3.8 inorganic phosphate transporter PitA compare
HGI48_RS17770 -0.7 -1.3 DeoR/GlpR transcriptional regulator compare
HGI48_RS15335 -0.7 -3.0 NupC/NupG family nucleoside CNT transporter compare
HGI48_RS08875 -0.7 -2.1 glutamine ABC transporter ATP-binding protein GlnQ compare
HGI48_RS01150 -0.7 -2.0 thiazole synthase compare
HGI48_RS08890 -0.7 -1.2 DNA starvation/stationary phase protection protein Dps compare
HGI48_RS17005 -0.7 -1.7 phosphoadenylyl-sulfate reductase compare
HGI48_RS15810 -0.7 -2.3 DNA repair protein RecO compare
HGI48_RS14035 -0.7 -1.4 LD-carboxypeptidase compare
HGI48_RS04365 -0.7 -1.5 RpoE-regulated lipoprotein compare
HGI48_RS06280 -0.7 -1.4 CNNM family magnesium/cobalt transport protein CorC compare
HGI48_RS05695 -0.7 -4.0 endopeptidase La compare
HGI48_RS19690 -0.6 -1.0 DUF2531 family protein compare
HGI48_RS20805 -0.6 -1.6 4-oxalocrotonate tautomerase family protein compare
HGI48_RS11950 -0.6 -2.1 type II toxin-antitoxin system prevent-host-death family antitoxin compare
HGI48_RS09460 -0.6 -1.0 glutaredoxin, GrxA family compare
HGI48_RS18600 -0.6 -2.7 ABC transporter permease compare
HGI48_RS01480 -0.6 -2.4 phospholipid ABC transporter ATP-binding protein MlaF compare
HGI48_RS13175 -0.6 -2.7 beta-ketoacyl-ACP synthase II compare
HGI48_RS02075 -0.6 -1.1 hypothetical protein compare
HGI48_RS18145 -0.6 -1.1 hypothetical protein compare
HGI48_RS00125 -0.6 -1.4 DUF3861 domain-containing protein compare
HGI48_RS04735 -0.6 -2.0 hypothetical protein compare
HGI48_RS16305 -0.6 -3.8 glutamate--cysteine ligase compare
HGI48_RS18795 -0.6 -1.8 flavodoxin compare
HGI48_RS13025 -0.6 -2.4 vitamin B12 ABC transporter ATP-binding protein BtuD compare
HGI48_RS18845 -0.6 -1.0 nitrogen fixation protein NifW compare
HGI48_RS15830 -0.6 -3.5 elongation factor 4 compare
HGI48_RS00630 -0.6 -2.2 P1 family peptidase compare
HGI48_RS09745 -0.6 -1.7 histidinol dehydrogenase compare
HGI48_RS12890 -0.6 -2.1 membrane integrity-associated transporter subunit PqiC compare
HGI48_RS09810 -0.6 -2.2 citrate lyase holo-[acyl-carrier protein] synthase compare
HGI48_RS13045 -0.6 -1.4 NAD-dependent protein deacylase compare
HGI48_RS01495 -0.6 -3.1 phospholipid-binding protein MlaC compare
HGI48_RS13390 -0.6 -3.3 flagellar filament capping protein FliD compare
HGI48_RS16605 -0.6 -1.2 glutamate 5-kinase compare
HGI48_RS06085 -0.6 -1.4 DnaA inactivator Hda compare
HGI48_RS09620 -0.6 -2.9 replication-associated recombination protein A compare
HGI48_RS09130 -0.6 -2.0 DUF4868 domain-containing protein compare
HGI48_RS06535 -0.6 -1.2 cyd operon protein YbgE compare
HGI48_RS20035 -0.6 -2.0 DNA helicase II compare
HGI48_RS08620 -0.6 -1.6 NAD(P)H-dependent oxidoreductase compare
HGI48_RS13110 -0.6 -1.8 alpha/beta hydrolase compare
HGI48_RS07775 -0.6 -1.9 LysR family transcriptional regulator compare
HGI48_RS16170 -0.6 -1.8 ribonuclease HI compare
HGI48_RS12410 -0.6 -1.7 tRNA 2-thiocytidine(32) synthetase TtcA compare
HGI48_RS19070 -0.6 -2.1 fumarate reductase subunit FrdC compare
HGI48_RS04495 -0.6 -2.3 nitric oxide reductase transcriptional regulator NorR compare
HGI48_RS11325 -0.6 -2.0 PTS mannose transporter subunit IID compare
HGI48_RS01050 -0.6 -1.1 tRNA-Thr compare
HGI48_RS07600 -0.6 -1.3 type II toxin-antitoxin system RelE/ParE family toxin compare
HGI48_RS01300 -0.6 -1.5 50S ribosomal protein L11 methyltransferase compare
HGI48_RS11375 -0.5 -1.2 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
HGI48_RS11020 -0.5 -1.2 hypothetical protein compare
HGI48_RS16595 -0.5 -2.1 tRNA-Thr compare
HGI48_RS09735 -0.5 -1.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HGI48_RS04320 -0.5 -2.5 DNA repair protein RecN compare
HGI48_RS15195 -0.5 -1.3 HAAAP family serine/threonine permease compare
HGI48_RS05390 -0.5 -1.0 alkylphosphonate utilization protein compare
HGI48_RS01485 -0.5 -1.6 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
HGI48_RS21565 -0.5 -2.6 phosphate ABC transporter permease PstC compare
HGI48_RS03260 -0.5 -3.3 polyribonucleotide nucleotidyltransferase compare
HGI48_RS14520 -0.5 -1.9 TSUP family transporter compare
HGI48_RS01195 -0.5 -2.6 YjaG family protein compare
HGI48_RS15865 -0.5 -4.0 ATP-dependent RNA helicase SrmB compare
HGI48_RS15795 -0.5 -1.6 YfhL family 4Fe-4S dicluster ferredoxin compare
HGI48_RS15755 -0.5 -2.6 membrane-bound lytic murein transglycosylase MltF compare
HGI48_RS03655 -0.5 -1.0 MarR family transcriptional regulator compare
HGI48_RS12210 -0.5 -1.7 phage tail assembly protein compare
HGI48_RS03585 -0.5 -2.0 hypothetical protein compare
HGI48_RS16670 -0.5 -2.3 S-methyl-5-thioribose kinase compare
HGI48_RS20220 -0.5 -0.9 thioredoxin TrxA compare
HGI48_RS17215 -0.5 -3.3 outer membrane protein assembly factor compare
HGI48_RS15190 -0.5 -1.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
HGI48_RS20405 -0.5 -1.9 DNA-binding transcriptional regulator OxyR compare
HGI48_RS16990 -0.5 -2.5 sulfate adenylyltransferase subunit CysN compare
HGI48_RS01570 -0.5 -2.4 aerobic respiration two-component sensor histidine kinase ArcB compare
HGI48_RS11240 -0.5 -2.2 septum site-determining protein MinC compare
HGI48_RS03100 -0.5 -2.2 hypothetical protein compare
HGI48_RS15615 -0.5 -1.3 Fe-S cluster assembly protein IscX compare
HGI48_RS12505 -0.5 -2.2 peptide ABC transporter substrate-binding protein SapA compare
HGI48_RS00915 -0.5 -1.2 Sec-independent protein translocase subunit TatB compare
HGI48_RS05730 -0.5 -2.7 SmdA family multidrug ABC transporter permease/ATP-binding protein compare
HGI48_RS14575 -0.5 -2.7 phospholipid-binding lipoprotein MlaA compare
HGI48_RS06390 -0.5 -1.7 esterase compare
HGI48_RS06775 -0.5 -0.8 glycosyltransferase family 2 protein compare
HGI48_RS00420 -0.5 -3.4 ABC transporter permease compare
HGI48_RS08425 -0.5 -1.5 TrbC/VirB2 family protein compare
HGI48_RS00880 -0.5 -1.9 acetylglutamate kinase compare
HGI48_RS12065 -0.5 -1.6 GAF domain-containing protein compare
HGI48_RS16090 -0.5 -1.7 ABC transporter ATP-binding protein compare
HGI48_RS05825 -0.5 -1.1 adenine phosphoribosyltransferase compare
HGI48_RS21380 -0.5 -1.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HGI48_RS02700 -0.5 -1.4 FxsA family protein compare
HGI48_RS04715 -0.5 -2.4 GNAT family N-acetyltransferase compare
HGI48_RS00685 -0.5 -1.1 nucleoid occlusion factor SlmA compare
HGI48_RS01990 -0.5 -1.5 helix-turn-helix domain-containing protein compare
HGI48_RS00620 -0.5 -1.3 isoaspartyl peptidase/L-asparaginase compare
HGI48_RS18810 -0.5 -1.7 radical SAM protein compare
HGI48_RS11645 -0.5 -1.2 CesT family type III secretion system chaperone compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola 67-19 in control experiments

For control kanamycin across organisms