Experiment setATCH204 for Dickeya dianthicola 67-19

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
HGI48_RS13650 -2.0 -2.3 glycoside hydrolase family 104 protein compare
HGI48_RS04355 -1.9 -3.0 oxygen-dependent coproporphyrinogen oxidase compare
HGI48_RS20045 -1.9 -4.0 tyrosine recombinase XerC compare
HGI48_RS19090 -1.9 -3.5 EF-P beta-lysylation protein EpmB compare
HGI48_RS01290 -1.7 -2.8 DNA-binding transcriptional regulator Fis compare
HGI48_RS01050 -1.6 -2.1 tRNA-Thr compare
HGI48_RS03265 -1.6 -4.5 lipoprotein NlpI compare
HGI48_RS17770 -1.6 -1.4 DeoR/GlpR transcriptional regulator compare
HGI48_RS17775 -1.6 -4.8 D-threonate 4-phosphate dehydrogenase compare
HGI48_RS13275 -1.5 -10.9 glucans biosynthesis glucosyltransferase MdoH compare
HGI48_RS00095 -1.5 -1.9 PAS domain-containing protein compare
HGI48_RS16050 -1.5 -2.0 RNA polymerase-binding protein DksA compare
HGI48_RS16605 -1.5 -3.0 glutamate 5-kinase compare
HGI48_RS06475 -1.4 -2.9 citrate synthase compare
HGI48_RS16355 -1.4 -1.8 recombinase RecA compare
HGI48_RS03135 -1.4 -2.2 malate dehydrogenase compare
HGI48_RS20545 -1.3 -3.1 NUDIX domain-containing protein compare
HGI48_RS12060 -1.3 -1.1 RNA chaperone ProQ compare
HGI48_RS13280 -1.3 -8.9 glucan biosynthesis protein G compare
HGI48_RS05535 -1.3 -1.3 preprotein translocase subunit YajC compare
HGI48_RS06280 -1.3 -2.0 CNNM family magnesium/cobalt transport protein CorC compare
HGI48_RS20070 -1.3 -2.7 class I adenylate cyclase compare
HGI48_RS19055 -1.2 -2.0 elongation factor P--(R)-beta-lysine ligase compare
HGI48_RS04395 -1.2 -3.5 Dyp-type peroxidase compare
HGI48_RS20745 -1.2 -3.5 cell division protein FtsX compare
HGI48_RS11490 -1.2 -4.2 DNA-binding transcriptional regulator KdgR compare
HGI48_RS11530 -1.1 -2.3 tRNA 2-thiouridine(34) synthase MnmA compare
HGI48_RS06085 -1.1 -2.5 DnaA inactivator Hda compare
HGI48_RS13200 -1.1 -3.7 phosphate acyltransferase PlsX compare
HGI48_RS04435 -1.1 -1.8 PTS glucose transporter subunit IIA compare
HGI48_RS02410 -1.1 -2.0 stress-response protein compare
HGI48_RS08555 -1.1 -1.9 helix-turn-helix domain-containing protein compare
HGI48_RS17030 -1.0 -3.1 6-carboxytetrahydropterin synthase QueD compare
HGI48_RS03440 -1.0 -0.9 site-specific tyrosine recombinase XerD compare
HGI48_RS10550 -1.0 -2.3 electron transport complex subunit E compare
HGI48_RS17565 -1.0 -4.2 alanine racemase compare
HGI48_RS00790 -1.0 -1.7 protein-export chaperone SecB compare
HGI48_RS10075 -1.0 -5.4 MAPEG family protein compare
HGI48_RS10135 -1.0 -2.1 murein DD-endopeptidase MepM compare
HGI48_RS14280 -1.0 -1.6 NADH-quinone oxidoreductase subunit NuoH compare
HGI48_RS14305 -1.0 -2.0 NADH-quinone oxidoreductase subunit B compare
HGI48_RS10140 -1.0 -2.6 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HGI48_RS00040 -1.0 -2.6 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ compare
HGI48_RS14270 -1.0 -1.4 NADH-quinone oxidoreductase subunit J compare
HGI48_RS07925 -0.9 -3.9 TetR/AcrR family transcriptional regulator compare
HGI48_RS05455 -0.9 -1.6 pyrimidine/purine nucleoside phosphorylase compare
HGI48_RS18550 -0.9 -1.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HGI48_RS07570 -0.9 -1.8 iron ABC transporter permease compare
HGI48_RS15185 -0.9 -1.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
HGI48_RS12055 -0.9 -3.1 carboxy terminal-processing peptidase compare
HGI48_RS20600 -0.9 -3.3 envelope stress sensor histidine kinase CpxA compare
HGI48_RS11595 -0.9 -1.3 damage-inducible protein J compare
HGI48_RS19815 -0.9 -1.8 glycerol-3-phosphate dehydrogenase compare
HGI48_RS02065 -0.9 -2.2 DUF1778 domain-containing protein compare
HGI48_RS06675 -0.9 -3.8 6-phosphogluconolactonase compare
HGI48_RS04350 -0.9 -1.8 YaiI/YqxD family protein compare
HGI48_RS04315 -0.9 -4.5 outer membrane protein assembly factor BamE compare
HGI48_RS12970 -0.9 -5.6 porin compare
HGI48_RS02125 -0.9 -1.8 D-threitol dehydrogenase compare
HGI48_RS21375 -0.8 -2.6 FMN-binding protein MioC compare
HGI48_RS14300 -0.8 -1.6 NADH-quinone oxidoreductase subunit C/D compare
HGI48_RS13390 -0.8 -3.9 flagellar filament capping protein FliD compare
HGI48_RS12630 -0.8 -0.7 pyridoxamine 5'-phosphate oxidase compare
HGI48_RS06480 -0.8 -2.2 succinate dehydrogenase cytochrome b556 subunit compare
HGI48_RS00915 -0.8 -1.6 Sec-independent protein translocase subunit TatB compare
HGI48_RS07165 -0.8 -1.9 AlpA family phage regulatory protein compare
HGI48_RS14285 -0.8 -1.1 NADH-quinone oxidoreductase subunit NuoG compare
HGI48_RS14355 -0.8 -2.4 phosphate acetyltransferase compare
HGI48_RS07860 -0.8 -1.5 malonate decarboxylase subunit epsilon compare
HGI48_RS17235 -0.8 -1.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
HGI48_RS20220 -0.8 -2.1 thioredoxin TrxA compare
HGI48_RS13620 -0.8 -2.0 protein DsrB compare
HGI48_RS04245 -0.8 -1.5 DUF4755 domain-containing protein compare
HGI48_RS15230 -0.8 -4.6 exopolyphosphatase compare
HGI48_RS02765 -0.7 -2.0 YqjK-like family protein compare
HGI48_RS16205 -0.7 -1.5 23S ribosomal RNA compare
HGI48_RS19720 -0.7 -1.6 intracellular growth attenuator family protein compare
HGI48_RS10490 -0.7 -3.1 PHP domain-containing protein compare
HGI48_RS14350 -0.7 -2.8 acetate kinase compare
HGI48_RS09520 -0.7 -2.9 arginine ABC transporter permease ArtQ compare
HGI48_RS01410 -0.7 -1.2 ribosome-associated protein compare
HGI48_RS19750 -0.7 -1.7 two-component system response regulator OmpR compare
HGI48_RS15560 -0.7 -1.7 outer membrane protein assembly factor BamB compare
HGI48_RS00420 -0.7 -5.0 ABC transporter permease compare
HGI48_RS06060 -0.7 -2.3 HTH-type transcriptional regulator GalS compare
HGI48_RS21040 -0.7 -0.9 DUF1471 domain-containing protein compare
HGI48_RS14435 -0.7 -1.1 tRNA pseudouridine(38-40) synthase TruA compare
HGI48_RS02940 -0.7 -2.6 phosphoadenosine phosphosulfate reductase family protein compare
HGI48_RS20970 -0.7 -1.9 heat shock chaperone IbpA compare
HGI48_RS05655 -0.7 -3.1 cytochrome o ubiquinol oxidase subunit I compare
HGI48_RS18030 -0.7 -4.7 catabolite repressor/activator compare
HGI48_RS19430 -0.7 -1.9 sulfurtransferase complex subunit TusC compare
HGI48_RS01590 -0.7 -1.0 divisome-associated lipoprotein YraP compare
HGI48_RS15830 -0.7 -3.7 elongation factor 4 compare
HGI48_RS00990 -0.7 -3.4 Trk system potassium transporter TrkH compare
HGI48_RS15225 -0.7 -2.1 polyphosphate kinase 1 compare
HGI48_RS18535 -0.7 -3.3 FtsH protease activity modulator HflK compare
HGI48_RS16235 -0.7 -2.9 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
HGI48_RS17450 -0.7 -3.2 LacI family DNA-binding transcriptional regulator compare
HGI48_RS14100 -0.7 -1.2 nitrate ABC transporter permease compare
HGI48_RS07085 -0.7 -1.7 conjugal transfer protein compare
HGI48_RS07545 -0.6 -2.8 DHA2 family efflux MFS transporter permease subunit compare
HGI48_RS14525 -0.6 -1.8 penicillin-insensitive murein endopeptidase compare
HGI48_RS17345 -0.6 -2.1 YggS family pyridoxal phosphate-dependent enzyme compare
HGI48_RS08960 -0.6 -2.3 hypothetical protein compare
HGI48_RS08295 -0.6 -1.2 IS481 family transposase compare
HGI48_RS04495 -0.6 -2.0 nitric oxide reductase transcriptional regulator NorR compare
HGI48_RS18020 -0.6 -1.7 division/cell wall cluster transcriptional repressor MraZ compare
HGI48_RS17210 -0.6 -3.9 translocation/assembly module TamB compare
HGI48_RS20555 -0.6 -1.6 phage tail assembly chaperone compare
HGI48_RS00910 -0.6 -2.1 Sec-independent protein translocase subunit TatA compare
HGI48_RS13175 -0.6 -2.5 beta-ketoacyl-ACP synthase II compare
HGI48_RS01480 -0.6 -2.1 phospholipid ABC transporter ATP-binding protein MlaF compare
HGI48_RS05695 -0.6 -3.9 endopeptidase La compare
HGI48_RS19900 -0.6 -2.2 gluconate operon transcriptional repressor GntR compare
HGI48_RS17745 -0.6 -2.2 glucosamine kinase compare
HGI48_RS01930 -0.6 -1.3 GNAT family N-acetyltransferase compare
HGI48_RS17215 -0.6 -3.9 outer membrane protein assembly factor compare
HGI48_RS18835 -0.6 -0.7 nitrogen fixation protein NifM compare
HGI48_RS06440 -0.6 -1.4 YbfA family protein compare
HGI48_RS18985 -0.6 -2.6 alanyl-tRNA synthetase compare
HGI48_RS03450 -0.6 -2.8 single-stranded-DNA-specific exonuclease RecJ compare
HGI48_RS20305 -0.6 -1.7 acetolactate synthase 2 small subunit compare
HGI48_RS01430 -0.6 -2.8 RNase adapter RapZ compare
HGI48_RS17425 -0.6 -2.8 FCD domain-containing protein compare
HGI48_RS04220 -0.6 -2.4 transposase compare
HGI48_RS09525 -0.6 -1.7 arginine ABC transporter substrate-binding protein compare
HGI48_RS09735 -0.6 -1.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HGI48_RS21385 -0.6 -2.6 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
HGI48_RS19965 -0.6 -2.0 glycerol-3-phosphate dehydrogenase subunit GlpB compare
HGI48_RS15805 -0.6 -1.1 pyridoxine 5'-phosphate synthase compare
HGI48_RS11950 -0.6 -1.5 type II toxin-antitoxin system prevent-host-death family antitoxin compare
HGI48_RS10245 -0.6 -1.2 GlsB/YeaQ/YmgE family stress response membrane protein compare
HGI48_RS12020 -0.6 -2.1 LysR family transcriptional regulator compare
HGI48_RS10170 -0.6 -1.8 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
HGI48_RS14365 -0.6 -2.1 phosphodiesterase compare
HGI48_RS02865 -0.6 -2.0 FAD:protein FMN transferase ApbE compare
HGI48_RS13135 -0.6 -2.3 purine nucleoside phosphoramidase compare
HGI48_RS09200 -0.6 -2.8 16S rRNA pseudouridine(516) synthase RsuA compare
HGI48_RS11145 -0.6 -1.5 hypothetical protein compare
HGI48_RS16450 -0.6 -1.9 GTPase compare
HGI48_RS05090 -0.6 -2.6 flavodoxin compare
HGI48_RS16805 -0.6 -2.2 glycine betaine/L-proline ABC transporter permease ProW compare
HGI48_RS14575 -0.6 -3.7 phospholipid-binding lipoprotein MlaA compare
HGI48_RS10885 -0.6 -1.7 superoxide dismutase family protein compare
HGI48_RS01600 -0.6 -1.9 YraN family protein compare
HGI48_RS06495 -0.5 -2.9 succinate dehydrogenase iron-sulfur subunit compare
HGI48_RS08525 -0.5 -1.5 DNA-damage-inducible protein J compare
HGI48_RS06490 -0.5 -2.7 succinate dehydrogenase flavoprotein subunit compare
HGI48_RS16845 -0.5 -1.8 thioredoxin TrxC compare
HGI48_RS12660 -0.5 -1.8 lactoylglutathione lyase compare
HGI48_RS21015 -0.5 -2.4 universal stress protein UspB compare
HGI48_RS19070 -0.5 -1.8 fumarate reductase subunit FrdC compare
HGI48_RS09925 -0.5 -2.2 NADH:flavin oxidoreductase compare
HGI48_RS04135 -0.5 -2.3 carboxymuconolactone decarboxylase family protein compare
HGI48_RS06785 -0.5 -1.4 glycosyl transferase compare
HGI48_RS10975 -0.5 -2.2 redox-regulated ATPase YchF compare
HGI48_RS14630 -0.5 -1.5 MbtH family NRPS accessory protein compare
HGI48_RS19800 -0.5 -1.7 DeoR/GlpR family transcriptional regulator compare
HGI48_RS10500 -0.5 -2.9 23S rRNA pseudouridine(2605) synthase RluB compare
HGI48_RS04500 -0.5 -3.8 fumarate hydratase compare
HGI48_RS20670 -0.5 -2.3 MCP four helix bundle domain-containing protein compare
HGI48_RS12960 -0.5 -1.6 nicotinate phosphoribosyltransferase compare
HGI48_RS18410 -0.5 -0.9 hypothetical protein compare
HGI48_RS07365 -0.5 -2.9 glutamate/aspartate:proton symporter GltP compare
HGI48_RS17595 -0.5 -2.9 aspartate/tyrosine/aromatic aminotransferase compare
HGI48_RS10540 -0.5 -3.3 HTH-type transcriptional regulator CysB compare
HGI48_RS14615 -0.5 -1.8 iron-enterobactin ABC transporter permease compare
HGI48_RS00700 -0.5 -1.7 DNA repair protein RadC compare
HGI48_RS13975 -0.5 -2.3 DNA cytosine methyltransferase compare
HGI48_RS09715 -0.5 -1.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HGI48_RS08890 -0.5 -1.1 DNA starvation/stationary phase protection protein Dps compare
HGI48_RS01490 -0.5 -3.2 outer membrane lipid asymmetry maintenance protein MlaD compare
HGI48_RS20995 -0.5 -1.6 FadR family transcriptional regulator compare
HGI48_RS17805 -0.5 -1.1 YhcH/YjgK/YiaL family protein compare
HGI48_RS04800 -0.5 -1.7 hypothetical protein compare
HGI48_RS15510 -0.5 -1.5 type II secretion system pilot lipoprotein GspS compare
HGI48_RS20035 -0.5 -1.9 DNA helicase II compare
HGI48_RS06840 -0.5 -2.5 NADP-dependent phosphogluconate dehydrogenase compare
HGI48_RS12240 -0.5 -3.3 guanine deaminase compare
HGI48_RS21710 -0.5 -1.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
HGI48_RS01720 -0.5 -1.4 TonB system transport protein ExbD compare
HGI48_RS05635 -0.5 -2.4 MFS transporter compare
HGI48_RS04910 -0.5 -2.0 A/G-specific adenine glycosylase compare
HGI48_RS21475 -0.5 -1.4 acyl carrier protein compare
HGI48_RS03770 -0.5 -1.4 myo-inosose-2 dehydratase compare
HGI48_RS16600 -0.5 -2.4 glutamate-5-semialdehyde dehydrogenase compare
HGI48_RS14580 -0.5 -1.0 tRNA-Arg compare
HGI48_RS11945 -0.5 -1.3 type II toxin-antitoxin system death-on-curing family toxin compare
HGI48_RS01690 -0.5 -2.0 2,5-didehydrogluconate reductase DkgA compare
HGI48_RS03715 -0.5 -1.4 hypothetical protein compare
HGI48_RS19230 -0.5 -1.5 Trk system potassium transporter TrkA compare
HGI48_RS10090 -0.5 -1.2 dihydroneopterin triphosphate diphosphatase compare
HGI48_RS03900 -0.5 -1.4 hypothetical protein compare
HGI48_RS00800 -0.5 -1.0 serine O-acetyltransferase compare
HGI48_RS08250 -0.5 -2.0 FadR family transcriptional regulator compare
HGI48_RS18015 -0.5 -2.4 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
HGI48_RS12990 -0.5 -2.6 aspartate/tyrosine/aromatic aminotransferase compare
HGI48_RS11630 -0.5 -0.6 hypothetical protein compare
HGI48_RS12670 -0.5 -2.1 Grx4 family monothiol glutaredoxin compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola 67-19 in control experiments

For control kanamycin across organisms