Experiment setATCH203 for Dickeya dianthicola 67-19

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
HGI48_RS19090 -2.4 -5.4 EF-P beta-lysylation protein EpmB compare
HGI48_RS14300 -2.0 -3.1 NADH-quinone oxidoreductase subunit C/D compare
HGI48_RS04355 -1.8 -3.2 oxygen-dependent coproporphyrinogen oxidase compare
HGI48_RS12060 -1.8 -1.4 RNA chaperone ProQ compare
HGI48_RS04395 -1.7 -5.0 Dyp-type peroxidase compare
HGI48_RS00360 -1.7 -3.1 MarR family transcriptional regulator compare
HGI48_RS06455 -1.6 -2.6 type 2 GTP cyclohydrolase I compare
HGI48_RS12630 -1.6 -1.8 pyridoxamine 5'-phosphate oxidase compare
HGI48_RS05535 -1.6 -1.6 preprotein translocase subunit YajC compare
HGI48_RS00790 -1.6 -2.3 protein-export chaperone SecB compare
HGI48_RS03265 -1.6 -4.7 lipoprotein NlpI compare
HGI48_RS20045 -1.6 -2.1 tyrosine recombinase XerC compare
HGI48_RS03440 -1.5 -1.5 site-specific tyrosine recombinase XerD compare
HGI48_RS16050 -1.5 -1.7 RNA polymerase-binding protein DksA compare
HGI48_RS04435 -1.4 -2.2 PTS glucose transporter subunit IIA compare
HGI48_RS13275 -1.4 -10.4 glucans biosynthesis glucosyltransferase MdoH compare
HGI48_RS12960 -1.4 -3.2 nicotinate phosphoribosyltransferase compare
HGI48_RS13280 -1.4 -9.0 glucan biosynthesis protein G compare
HGI48_RS01290 -1.4 -3.5 DNA-binding transcriptional regulator Fis compare
HGI48_RS16355 -1.3 -2.9 recombinase RecA compare
HGI48_RS11595 -1.3 -2.9 damage-inducible protein J compare
HGI48_RS12570 -1.3 -3.4 osmotically-inducible lipoprotein OsmB compare
HGI48_RS19435 -1.3 -1.8 sulfurtransferase complex subunit TusD compare
HGI48_RS21430 -1.3 -2.1 F0F1 ATP synthase subunit epsilon compare
HGI48_RS14260 -1.3 -2.4 NADH-quinone oxidoreductase subunit L compare
HGI48_RS13210 -1.2 -2.7 23S rRNA accumulation protein YceD compare
HGI48_RS12920 -1.2 -2.3 cell division protein ZapC compare
HGI48_RS15560 -1.2 -3.0 outer membrane protein assembly factor BamB compare
HGI48_RS20580 -1.2 -1.6 transposase compare
HGI48_RS10140 -1.2 -3.2 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
HGI48_RS17565 -1.2 -4.7 alanine racemase compare
HGI48_RS01480 -1.2 -3.9 phospholipid ABC transporter ATP-binding protein MlaF compare
HGI48_RS11490 -1.2 -4.5 DNA-binding transcriptional regulator KdgR compare
HGI48_RS02290 -1.1 -3.8 hypothetical protein compare
HGI48_RS14270 -1.1 -2.0 NADH-quinone oxidoreductase subunit J compare
HGI48_RS17775 -1.1 -3.3 D-threonate 4-phosphate dehydrogenase compare
HGI48_RS17770 -1.1 -1.8 DeoR/GlpR transcriptional regulator compare
HGI48_RS09745 -1.1 -3.2 histidinol dehydrogenase compare
HGI48_RS15580 -1.1 -3.3 cytoskeleton protein RodZ compare
HGI48_RS07055 -1.1 -1.8 IS481 family transposase compare
HGI48_RS19720 -1.1 -1.9 intracellular growth attenuator family protein compare
HGI48_RS06775 -1.1 -1.6 glycosyltransferase family 2 protein compare
HGI48_RS17805 -1.1 -2.1 YhcH/YjgK/YiaL family protein compare
HGI48_RS14355 -1.0 -3.6 phosphate acetyltransferase compare
HGI48_RS01050 -1.0 -2.0 tRNA-Thr compare
HGI48_RS14435 -1.0 -1.5 tRNA pseudouridine(38-40) synthase TruA compare
HGI48_RS00915 -1.0 -2.5 Sec-independent protein translocase subunit TatB compare
HGI48_RS09460 -1.0 -2.0 glutaredoxin, GrxA family compare
HGI48_RS00735 -1.0 -1.5 glycosyltransferase family 4 protein compare
HGI48_RS11585 -1.0 -1.6 hypothetical protein compare
HGI48_RS20035 -1.0 -3.7 DNA helicase II compare
HGI48_RS13200 -1.0 -3.3 phosphate acyltransferase PlsX compare
HGI48_RS16605 -1.0 -2.0 glutamate 5-kinase compare
HGI48_RS06495 -1.0 -4.7 succinate dehydrogenase iron-sulfur subunit compare
HGI48_RS20070 -1.0 -3.3 class I adenylate cyclase compare
HGI48_RS06475 -1.0 -1.4 citrate synthase compare
HGI48_RS10075 -1.0 -6.2 MAPEG family protein compare
HGI48_RS11645 -1.0 -2.9 CesT family type III secretion system chaperone compare
HGI48_RS00780 -1.0 -3.5 murein hydrolase activator EnvC compare
HGI48_RS02075 -0.9 -2.5 hypothetical protein compare
HGI48_RS16205 -0.9 -1.6 23S ribosomal RNA compare
HGI48_RS02665 -0.9 -1.9 helix-turn-helix domain-containing protein compare
HGI48_RS14680 -0.9 -1.9 membrane protein YpdK compare
HGI48_RS04305 -0.9 -2.5 type II toxin-antitoxin system RatA family toxin compare
HGI48_RS12055 -0.9 -3.1 carboxy terminal-processing peptidase compare
HGI48_RS11950 -0.9 -2.8 type II toxin-antitoxin system prevent-host-death family antitoxin compare
HGI48_RS01590 -0.9 -1.2 divisome-associated lipoprotein YraP compare
HGI48_RS18125 -0.9 -2.0 acetolactate synthase small subunit compare
HGI48_RS18210 -0.9 -2.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
HGI48_RS10885 -0.9 -2.5 superoxide dismutase family protein compare
HGI48_RS08890 -0.9 -1.6 DNA starvation/stationary phase protection protein Dps compare
HGI48_RS03900 -0.9 -2.4 hypothetical protein compare
HGI48_RS10500 -0.8 -4.3 23S rRNA pseudouridine(2605) synthase RluB compare
HGI48_RS00700 -0.8 -2.8 DNA repair protein RadC compare
HGI48_RS21040 -0.8 -1.1 DUF1471 domain-containing protein compare
HGI48_RS21295 -0.8 -2.5 23S ribosomal RNA compare
HGI48_RS08300 -0.8 -2.1 CcdB family protein compare
HGI48_RS20750 -0.8 -1.0 cell division ATP-binding protein FtsE compare
HGI48_RS03450 -0.8 -3.1 single-stranded-DNA-specific exonuclease RecJ compare
HGI48_RS11530 -0.8 -2.0 tRNA 2-thiouridine(34) synthase MnmA compare
HGI48_RS06735 -0.8 -1.6 protein-tyrosine-phosphatase compare
HGI48_RS20805 -0.8 -1.9 4-oxalocrotonate tautomerase family protein compare
HGI48_RS10570 -0.8 -1.9 electron transport complex subunit RsxB compare
HGI48_RS17355 -0.8 -2.4 YggT family protein compare
HGI48_RS14445 -0.8 -1.2 4-phosphoerythronate dehydrogenase PdxB compare
HGI48_RS20745 -0.8 -2.6 cell division protein FtsX compare
HGI48_RS15830 -0.8 -4.5 elongation factor 4 compare
HGI48_RS06480 -0.8 -2.3 succinate dehydrogenase cytochrome b556 subunit compare
HGI48_RS17210 -0.8 -4.4 translocation/assembly module TamB compare
HGI48_RS03325 -0.8 -2.6 purine-nucleoside phosphorylase compare
HGI48_RS12685 -0.8 -4.4 HTH-type transcriptional repressor PurR compare
HGI48_RS12660 -0.7 -2.3 lactoylglutathione lyase compare
HGI48_RS00095 -0.7 -0.8 PAS domain-containing protein compare
HGI48_RS15275 -0.7 -2.3 heat shock protein HspQ compare
HGI48_RS04225 -0.7 -1.8 hypothetical protein compare
HGI48_RS06280 -0.7 -2.3 CNNM family magnesium/cobalt transport protein CorC compare
HGI48_RS07925 -0.7 -2.3 TetR/AcrR family transcriptional regulator compare
HGI48_RS01410 -0.7 -1.4 ribosome-associated protein compare
HGI48_RS10975 -0.7 -2.9 redox-regulated ATPase YchF compare
HGI48_RS11945 -0.7 -1.7 type II toxin-antitoxin system death-on-curing family toxin compare
HGI48_RS06490 -0.7 -3.8 succinate dehydrogenase flavoprotein subunit compare
HGI48_RS15225 -0.7 -2.3 polyphosphate kinase 1 compare
HGI48_RS10425 -0.7 -1.5 YciI family protein compare
HGI48_RS01195 -0.7 -2.9 YjaG family protein compare
HGI48_RS12185 -0.7 -3.4 recombinase family protein compare
HGI48_RS04315 -0.7 -3.0 outer membrane protein assembly factor BamE compare
HGI48_RS02860 -0.7 -1.3 ATP-independent periplasmic protein-refolding chaperone compare
HGI48_RS08525 -0.7 -1.5 DNA-damage-inducible protein J compare
HGI48_RS10990 -0.7 -1.7 AAA family ATPase compare
HGI48_RS14350 -0.7 -1.8 acetate kinase compare
HGI48_RS19750 -0.7 -2.0 two-component system response regulator OmpR compare
HGI48_RS15530 -0.7 -1.3 glutamine-hydrolyzing GMP synthase compare
HGI48_RS09210 -0.7 -1.9 hypothetical protein compare
HGI48_RS04495 -0.7 -2.4 nitric oxide reductase transcriptional regulator NorR compare
HGI48_RS11680 -0.7 -2.5 serine kinase compare
HGI48_RS00990 -0.7 -3.2 Trk system potassium transporter TrkH compare
HGI48_RS13390 -0.7 -3.6 flagellar filament capping protein FliD compare
HGI48_RS09520 -0.7 -3.1 arginine ABC transporter permease ArtQ compare
HGI48_RS09730 -0.7 -3.5 imidazole glycerol phosphate synthase subunit HisH compare
HGI48_RS15195 -0.7 -1.3 HAAAP family serine/threonine permease compare
HGI48_RS06700 -0.7 -2.3 iron-sulfur cluster carrier protein ApbC compare
HGI48_RS20545 -0.6 -1.8 NUDIX domain-containing protein compare
HGI48_RS12545 -0.6 -3.1 exoribonuclease II compare
HGI48_RS16945 -0.6 -1.3 RNA polymerase sigma factor RpoS compare
HGI48_RS04180 -0.6 -2.9 DUF1330 domain-containing protein compare
HGI48_RS02700 -0.6 -1.9 FxsA family protein compare
HGI48_RS05655 -0.6 -3.1 cytochrome o ubiquinol oxidase subunit I compare
HGI48_RS13015 -0.6 -1.8 EAL domain-containing protein compare
HGI48_RS01300 -0.6 -1.4 50S ribosomal protein L11 methyltransferase compare
HGI48_RS17380 -0.6 -2.8 GNAT family N-acetyltransferase compare
HGI48_RS01485 -0.6 -2.4 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
HGI48_RS21220 -0.6 -2.8 ribosome-dependent GTPase TypA compare
HGI48_RS17535 -0.6 -3.2 DUF2384 domain-containing protein compare
HGI48_RS17750 -0.6 -1.7 ABC transporter ATP-binding protein compare
HGI48_RS20455 -0.6 -1.5 ATP-dependent protease subunit HslV compare
HGI48_RS05825 -0.6 -1.7 adenine phosphoribosyltransferase compare
HGI48_RS20595 -0.6 -2.4 envelope stress response regulator transcription factor CpxR compare
HGI48_RS06390 -0.6 -2.5 esterase compare
HGI48_RS12410 -0.6 -2.5 tRNA 2-thiocytidine(32) synthetase TtcA compare
HGI48_RS19745 -0.6 -3.0 two-component system sensor histidine kinase EnvZ compare
HGI48_RS13395 -0.6 -2.0 flagellar export chaperone FliS compare
HGI48_RS02125 -0.6 -1.4 D-threitol dehydrogenase compare
HGI48_RS17595 -0.6 -3.8 aspartate/tyrosine/aromatic aminotransferase compare
HGI48_RS20600 -0.6 -2.2 envelope stress sensor histidine kinase CpxA compare
HGI48_RS07600 -0.6 -1.3 type II toxin-antitoxin system RelE/ParE family toxin compare
HGI48_RS00800 -0.6 -1.4 serine O-acetyltransferase compare
HGI48_RS04645 -0.6 -2.8 hypothetical protein compare
HGI48_RS06515 -0.6 -1.5 succinate--CoA ligase subunit alpha compare
HGI48_RS17215 -0.6 -3.8 outer membrane protein assembly factor compare
HGI48_RS04020 -0.6 -2.0 S26 family signal peptidase compare
HGI48_RS12970 -0.6 -4.1 porin compare
HGI48_RS10565 -0.6 -2.0 electron transport complex subunit RsxC compare
HGI48_RS00420 -0.6 -3.9 ABC transporter permease compare
HGI48_RS18530 -0.6 -2.5 protease modulator HflC compare
HGI48_RS02940 -0.6 -2.2 phosphoadenosine phosphosulfate reductase family protein compare
HGI48_RS17925 -0.6 -1.4 DNA gyrase inhibitor YacG compare
HGI48_RS05695 -0.6 -3.5 endopeptidase La compare
HGI48_RS16030 -0.6 -1.6 bifunctional glycosyl transferase/transpeptidase compare
HGI48_RS00955 -0.5 -1.2 helix-turn-helix transcriptional regulator compare
HGI48_RS12020 -0.5 -1.7 LysR family transcriptional regulator compare
HGI48_RS21375 -0.5 -1.6 FMN-binding protein MioC compare
HGI48_RS08320 -0.5 -1.6 S26 family signal peptidase compare
HGI48_RS08595 -0.5 -2.2 DgsA anti-repressor MtfA compare
HGI48_RS14285 -0.5 -1.2 NADH-quinone oxidoreductase subunit NuoG compare
HGI48_RS15190 -0.5 -1.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
HGI48_RS05150 -0.5 -2.8 sigma E protease regulator RseP compare
HGI48_RS12990 -0.5 -2.9 aspartate/tyrosine/aromatic aminotransferase compare
HGI48_RS13975 -0.5 -2.9 DNA cytosine methyltransferase compare
HGI48_RS15425 -0.5 -1.3 amino acid ABC transporter permease compare
HGI48_RS10530 -0.5 -1.6 YciN family protein compare
HGI48_RS18845 -0.5 -1.1 nitrogen fixation protein NifW compare
HGI48_RS11205 -0.5 -3.1 fatty acid metabolism transcriptional regulator FadR compare
HGI48_RS01640 -0.5 -2.0 ADP-ribose diphosphatase compare
HGI48_RS05640 -0.5 -2.0 protoheme IX farnesyltransferase compare
HGI48_RS04365 -0.5 -1.1 RpoE-regulated lipoprotein compare
HGI48_RS13545 -0.5 -1.6 flagellar protein FlhE compare
HGI48_RS15235 -0.5 -1.3 DksA/TraR family C4-type zinc finger protein compare
HGI48_RS06270 -0.5 -1.9 glutamate/aspartate ABC transporter substrate-binding protein compare
HGI48_RS14315 -0.5 -3.2 transcriptional regulator LrhA compare
HGI48_RS16525 -0.5 -1.3 acyl carrier protein compare
HGI48_RS19815 -0.5 -1.3 glycerol-3-phosphate dehydrogenase compare
HGI48_RS12355 -0.5 -2.1 LUD domain-containing protein compare
HGI48_RS09750 -0.5 -1.6 ATP phosphoribosyltransferase compare
HGI48_RS04500 -0.5 -3.8 fumarate hydratase compare
HGI48_RS04970 -0.5 -2.0 thymidylate synthase compare
HGI48_RS16600 -0.5 -2.5 glutamate-5-semialdehyde dehydrogenase compare
HGI48_RS17890 -0.5 -1.9 carboxylating nicotinate-nucleotide diphosphorylase compare
HGI48_RS19900 -0.5 -1.8 gluconate operon transcriptional repressor GntR compare
HGI48_RS12670 -0.5 -2.7 Grx4 family monothiol glutaredoxin compare
HGI48_RS08880 -0.5 -2.4 glutamine ABC transporter permease GlnP compare
HGI48_RS21235 -0.5 -2.7 nitrogen regulation protein NR(I) compare
HGI48_RS12595 -0.5 -1.9 phosphatidylglycerophosphatase B compare
HGI48_RS00165 -0.5 -2.4 valine--pyruvate transaminase compare
HGI48_RS21020 -0.5 -3.0 inorganic phosphate transporter PitA compare
HGI48_RS11970 -0.5 -1.8 VOC family protein compare
HGI48_RS19455 -0.5 -2.9 two-component system sensor histidine kinase PmrB compare
HGI48_RS10080 -0.5 -1.6 DUF72 domain-containing protein compare
HGI48_RS17135 -0.5 -2.3 FlxA-like family protein compare
HGI48_RS08365 -0.5 -2.2 DNA sulfur modification protein DndE compare
HGI48_RS17030 -0.5 -1.6 6-carboxytetrahydropterin synthase QueD compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola 67-19 in control experiments

For control kanamycin across organisms