Experiment setATCH199 for Dickeya dadantii 3937

Compare to:

M9+glycerol

200 most important genes:

  gene name fitness t score description  
DDA3937_RS20340 -4.6 -10.4 argininosuccinate lyase compare
DDA3937_RS18480 -3.5 -6.2 phosphoglycerate dehydrogenase compare
DDA3937_RS20360 -3.4 -14.1 phosphoenolpyruvate carboxylase compare
DDA3937_RS01660 -3.4 -8.2 FAD-dependent oxidoreductase compare
DDA3937_RS20350 -3.4 -7.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
DDA3937_RS20345 -3.1 -4.3 acetylglutamate kinase compare
DDA3937_RS20355 -3.1 -10.4 acetylornithine deacetylase compare
DDA3937_RS18130 -3.1 -2.7 3-isopropylmalate dehydratase small subunit compare
DDA3937_RS20155 -3.0 -13.9 dihydroxy-acid dehydratase compare
DDA3937_RS01665 -3.0 -14.3 glutamate synthase large subunit compare
DDA3937_RS01940 -2.9 -7.0 ornithine carbamoyltransferase compare
DDA3937_RS09370 -2.9 -1.7 GTP cyclohydrolase I FolE compare
DDA3937_RS20890 -2.7 -13.0 argininosuccinate synthase compare
DDA3937_RS04990 -2.7 -11.0 amino-acid N-acetyltransferase compare
DDA3937_RS17425 -2.7 -9.3 diaminopimelate decarboxylase compare
DDA3937_RS18305 -2.7 -10.9 carbamoyl-phosphate synthase large subunit compare
DDA3937_RS18410 -2.6 -8.9 homoserine kinase compare
DDA3937_RS01530 -2.5 -1.8 RNA polymerase factor sigma-54 compare
DDA3937_RS12610 -2.5 -4.0 Grx4 family monothiol glutaredoxin compare
DDA3937_RS09705 -2.5 -7.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
DDA3937_RS18405 -2.4 -9.0 threonine synthase compare
DDA3937_RS02545 -2.4 -8.7 heavy metal translocating P-type ATPase compare
DDA3937_RS06075 -2.4 -3.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DDA3937_RS12780 -2.4 -4.2 Fe-S cluster assembly scaffold SufA compare
DDA3937_RS01815 -2.3 -7.9 cystathionine beta-lyase compare
DDA3937_RS01215 -2.3 -7.5 phosphoribosylamine--glycine ligase compare
DDA3937_RS18310 -2.3 -10.3 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DDA3937_RS09725 -2.3 -6.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
DDA3937_RS05160 -2.3 -1.8 molecular chaperone Skp compare
DDA3937_RS18125 -2.3 -11.8 3-isopropylmalate dehydratase large subunit compare
DDA3937_RS06295 -2.2 -9.4 asparagine synthase B compare
DDA3937_RS01220 -2.2 -11.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DDA3937_RS06535 -2.2 -1.0 tRNA-Lys compare
DDA3937_RS18275 -2.2 -8.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
DDA3937_RS09590 -2.2 -4.1 leucine-responsive transcriptional regulator Lrp compare
DDA3937_RS00890 -2.2 -9.0 glycerol kinase GlpK compare
DDA3937_RS00950 -2.2 -11.0 cystathionine gamma-synthase compare
DDA3937_RS12525 -2.1 -6.1 orotidine-5'-phosphate decarboxylase compare
DDA3937_RS00125 -2.1 -2.3 nitrogen regulation protein NR(I) compare
DDA3937_RS18415 -2.1 -12.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
DDA3937_RS03160 -2.1 -2.9 VOC family protein compare
DDA3937_RS15110 -2.0 -4.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
DDA3937_RS03300 -2.0 -1.1 site-specific tyrosine recombinase XerD compare
DDA3937_RS12915 -2.0 -16.8 aspartate/tyrosine/aromatic aminotransferase compare
DDA3937_RS05595 -2.0 -1.7 protoheme IX farnesyltransferase compare
DDA3937_RS02425 -2.0 -7.2 phosphoserine phosphatase compare
DDA3937_RS19915 -2.0 -1.2 class I adenylate cyclase compare
DDA3937_RS09735 -2.0 -11.0 histidinol dehydrogenase compare
DDA3937_RS15720 -2.0 -4.5 pyridoxine 5'-phosphate synthase compare
DDA3937_RS01250 -1.9 -0.9 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
DDA3937_RS23335 -1.9 -3.3 leu operon leader peptide compare
DDA3937_RS10460 -1.9 -7.0 tryptophan synthase subunit alpha compare
DDA3937_RS15955 -1.9 -8.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
DDA3937_RS18585 -1.9 -1.2 adenylosuccinate synthase compare
DDA3937_RS12790 -1.9 -1.6 hotdog fold thioesterase compare
DDA3937_RS09710 -1.9 -5.7 imidazole glycerol phosphate synthase subunit HisF compare
DDA3937_RS15750 -1.9 -2.3 SoxR-reducing system protein RseC compare
DDA3937_RS10540 -1.9 -1.6 HTH-type transcriptional regulator CysB compare
DDA3937_RS16595 -1.8 -2.1 acyl-CoA dehydrogenase FadE compare
DDA3937_RS04490 -1.8 -2.4 cysteine synthase A compare
DDA3937_RS14475 -1.8 -3.9 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS10440 -1.8 -3.3 UPF0259 family protein compare
DDA3937_RS04480 -1.8 -6.1 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DDA3937_RS20130 -1.7 -4.9 ketol-acid reductoisomerase compare
DDA3937_RS00895 -1.7 -9.8 aquaporin compare
DDA3937_RS18120 -1.7 -7.0 3-isopropylmalate dehydrogenase compare
DDA3937_RS12425 -1.7 -1.1 phage shock protein PspA compare
DDA3937_RS17305 -1.7 -3.6 pyrroline-5-carboxylate reductase compare
DDA3937_RS13355 -1.7 -3.4 flagellar protein FliT compare
DDA3937_RS10470 -1.7 -6.9 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DDA3937_RS09730 -1.7 -5.4 histidinol-phosphate transaminase compare
DDA3937_RS05470 -1.7 -2.3 tRNA guanosine(34) transglycosylase Tgt compare
DDA3937_RS10465 -1.7 -6.6 tryptophan synthase subunit beta compare
DDA3937_RS14945 -1.7 -3.4 hypothetical protein compare
DDA3937_RS10580 -1.7 -2.3 transcription modulator YdgT compare
DDA3937_RS10325 -1.7 -8.3 formyltetrahydrofolate deformylase compare
DDA3937_RS09585 -1.6 -1.5 thioredoxin-disulfide reductase compare
DDA3937_RS04895 -1.6 -3.8 oxidative damage protection protein compare
DDA3937_RS09720 -1.6 -4.7 imidazole glycerol phosphate synthase subunit HisH compare
DDA3937_RS08400 -1.6 -1.5 H-NS histone family protein compare
DDA3937_RS20385 -1.6 -7.4 HTH-type transcriptional regulator MetR compare
DDA3937_RS18490 -1.6 -7.9 LysR family transcriptional regulator ArgP compare
DDA3937_RS04315 -1.6 -3.0 RnfH family protein compare
DDA3937_RS17180 -1.5 -4.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DDA3937_RS03485 -1.5 -1.7 hypothetical protein compare
DDA3937_RS22175 -1.5 -1.3 IS3 family transposase compare
DDA3937_RS23190 -1.5 -1.4 hypothetical protein compare
DDA3937_RS20535 -1.5 -8.0 orotate phosphoribosyltransferase compare
DDA3937_RS10405 -1.5 -1.7 cardiolipin synthase compare
DDA3937_RS14740 -1.5 -2.9 alpha/beta hydrolase compare
DDA3937_RS11080 -1.5 -2.3 exodeoxyribonuclease V subunit beta compare
DDA3937_RS03990 -1.5 -1.9 CopG family transcriptional regulator compare
DDA3937_RS20085 -1.5 -3.9 exopolyphosphatase compare
DDA3937_RS19065 -1.5 -6.1 homoserine O-succinyltransferase compare
DDA3937_RS17700 -1.4 -2.3 AAA family ATPase compare
DDA3937_RS20265 -1.4 -0.7 YeeE/YedE family protein compare
DDA3937_RS20735 -1.4 -2.9 hypothetical protein compare
DDA3937_RS01155 -1.4 -4.8 thiazole synthase compare
DDA3937_RS00970 -1.4 -2.9 DNA-binding transcriptional regulator OxyR compare
DDA3937_RS15965 -1.4 -8.8 aspartate 1-decarboxylase compare
DDA3937_RS04910 -1.4 -1.6 YggL family protein compare
DDA3937_RS06210 -1.4 -1.4 amino acid ABC transporter ATP-binding protein compare
DDA3937_RS10475 -1.4 -6.2 anthranilate phosphoribosyltransferase compare
DDA3937_RS17600 -1.4 -1.0 IS110 family transposase compare
DDA3937_RS10485 -1.4 -8.2 anthranilate synthase component 1 compare
DDA3937_RS04555 -1.4 -1.3 DNA-3-methyladenine glycosylase 2 family protein compare
DDA3937_RS16940 -1.4 -8.3 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
DDA3937_RS10435 -1.4 -1.0 septation protein A compare
DDA3937_RS04960 -1.4 -1.8 thymidylate synthase compare
DDA3937_RS06685 -1.3 -3.5 iron-sulfur cluster carrier protein ApbC compare
DDA3937_RS15655 -1.3 -9.6 phosphoribosylformylglycinamidine synthase compare
DDA3937_RS18010 -1.3 -0.8 DUF721 domain-containing protein compare
DDA3937_RS12600 -1.3 -2.1 lactoylglutathione lyase compare
DDA3937_RS08590 -1.3 -6.0 iron ABC transporter substrate-binding protein compare
DDA3937_RS04945 -1.3 -5.8 RNA pyrophosphohydrolase compare
DDA3937_RS10125 -1.3 -3.0 pyruvate kinase compare
DDA3937_RS16535 -1.3 -4.1 glutamate 5-kinase compare
DDA3937_RS00655 -1.3 -3.8 aspartate 1-decarboxylase autocleavage activator PanM compare
DDA3937_RS20150 -1.3 -5.3 threonine ammonia-lyase, biosynthetic compare
DDA3937_RS15815 -1.3 -0.9 tRNA-Val compare
DDA3937_RS10340 -1.3 -6.1 two-component system response regulator RssB compare
DDA3937_RS10570 -1.3 -4.4 electron transport complex subunit RsxB compare
DDA3937_RS18195 -1.3 -3.2 hypothetical protein compare
DDA3937_RS06770 -1.2 -1.5 oligosaccharide flippase family protein compare
DDA3937_RS10560 -1.2 -3.0 electron transport complex subunit RsxD compare
DDA3937_RS18115 -1.2 -5.7 2-isopropylmalate synthase compare
DDA3937_RS03020 -1.2 -1.5 ribosome assembly RNA-binding protein YhbY compare
DDA3937_RS04430 -1.2 -3.7 Hcp family type VI secretion system effector compare
DDA3937_RS10555 -1.2 -1.6 electron transport complex subunit RsxG compare
DDA3937_RS06025 -1.2 -5.4 phosphoribosylformylglycinamidine cyclo-ligase compare
DDA3937_RS15765 -1.2 -9.0 RNA polymerase sigma factor RpoE compare
DDA3937_RS07765 -1.2 -2.0 ABC transporter ATP-binding protein compare
DDA3937_RS06490 -1.2 -1.1 cyd operon protein YbgE compare
DDA3937_RS14530 -1.2 -2.5 AzlD domain-containing protein compare
DDA3937_RS18270 -1.2 -4.1 Co2+/Mg2+ efflux protein ApaG compare
DDA3937_RS19440 -1.2 -1.4 OsmC family protein compare
DDA3937_RS16945 -1.2 -7.1 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
DDA3937_RS13795 -1.2 -2.8 helix-turn-helix domain-containing protein compare
DDA3937_RS08595 -1.2 -5.9 iron ABC transporter permease compare
DDA3937_RS18170 -1.2 -5.7 acetolactate synthase large subunit compare
DDA3937_RS09670 -1.2 -2.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
DDA3937_RS14610 -1.2 -1.2 YfcZ/YiiS family protein compare
DDA3937_RS20675 -1.2 -1.7 hypothetical protein compare
DDA3937_RS15365 -1.1 -2.2 VOC family protein compare
DDA3937_RS13050 -1.1 -2.9 beta-N-acetylhexosaminidase compare
DDA3937_RS15745 -1.1 -3.4 elongation factor 4 compare
DDA3937_RS12755 -1.1 -5.2 cysteine desulfuration protein SufE compare
DDA3937_RS09290 -1.1 -3.7 2-oxo acid dehydrogenase subunit E2 compare
DDA3937_RS01590 -1.1 -3.0 BolA family iron metabolism protein IbaG compare
DDA3937_RS14905 -1.1 -1.7 PTS transporter subunit EIIB compare
DDA3937_RS04050 -1.1 -3.1 AAA family ATPase compare
DDA3937_RS06855 -1.1 -3.8 DUF1471 domain-containing protein compare
DDA3937_RS01150 -1.1 -7.5 2-iminoacetate synthase ThiH compare
DDA3937_RS17400 -1.1 -2.4 PTS sugar transporter subunit IIB compare
DDA3937_RS05080 -1.1 -1.8 YqcC family protein compare
DDA3937_RS02340 -1.1 -3.7 hypothetical protein compare
DDA3937_RS20855 -1.1 -1.6 acyl carrier protein compare
DDA3937_RS06745 -1.1 -3.5 dTDP-4-dehydrorhamnose 3,5-epimerase compare
DDA3937_RS10675 -1.1 -1.2 ROK family transcriptional regulator compare
DDA3937_RS04195 -1.1 -3.9 GPO family capsid scaffolding protein compare
DDA3937_RS08600 -1.1 -3.6 ABC transporter ATP-binding protein compare
DDA3937_RS06040 -1.1 -1.2 DnaA inactivator Hda compare
DDA3937_RS05555 -1.1 -5.7 2-dehydropantoate 2-reductase compare
DDA3937_RS23315 -1.1 -1.8 protein MgtS compare
DDA3937_RS13040 -1.1 -3.8 NAD(P)/FAD-dependent oxidoreductase compare
DDA3937_RS17300 -1.1 -4.4 YggS family pyridoxal phosphate-dependent enzyme compare
DDA3937_RS00275 -1.1 -2.5 GNAT family N-acetyltransferase compare
DDA3937_RS02630 -1.1 -2.8 TIGR04141 family sporadically distributed protein compare
DDA3937_RS05955 -1.1 -3.1 SDR family oxidoreductase compare
DDA3937_RS12765 -1.1 -4.6 Fe-S cluster assembly protein SufD compare
DDA3937_RS16935 -1.1 -1.6 phosphoadenylyl-sulfate reductase compare
DDA3937_RS06695 -1.1 -3.3 dCTP deaminase compare
DDA3937_RS20560 -1.1 -1.8 L-Ala-D/L-Glu epimerase compare
DDA3937_RS20770 -1.0 -2.2 VOC family protein compare
DDA3937_RS23425 -1.0 -1.8 hypothetical protein compare
DDA3937_RS00525 -1.0 -4.7 cellulose synthase operon protein YhjQ compare
DDA3937_RS16470 -1.0 -1.4 hypothetical protein compare
DDA3937_RS17150 -1.0 -1.2 gamma-glutamylcyclotransferase compare
DDA3937_RS09715 -1.0 -1.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
DDA3937_RS18145 -1.0 -1.5 hypothetical protein compare
DDA3937_RS22080 -1.0 -0.9 transposase compare
DDA3937_RS02410 -1.0 -1.5 5-formyltetrahydrofolate cyclo-ligase compare
DDA3937_RS20805 -1.0 -2.0 DUF2807 domain-containing protein compare
DDA3937_RS12760 -1.0 -3.8 cysteine desulfurase SufS compare
DDA3937_RS15960 -1.0 -4.2 pantoate--beta-alanine ligase compare
DDA3937_RS07795 -1.0 -1.3 GNAT family N-acetyltransferase compare
DDA3937_RS02725 -1.0 -1.0 FxsA family protein compare
DDA3937_RS03120 -1.0 -2.4 SCP2 domain-containing protein compare
DDA3937_RS08145 -1.0 -1.8 metal ABC transporter permease compare
DDA3937_RS05545 -1.0 -3.8 tRNA 4-thiouridine(8) synthase ThiI compare
DDA3937_RS01745 -1.0 -3.9 ADP-ribose diphosphatase compare
DDA3937_RS01895 -1.0 -1.9 ABC transporter permease compare
DDA3937_RS00135 -1.0 -0.7 glutamate--ammonia ligase compare
DDA3937_RS05105 -1.0 -2.0 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
DDA3937_RS16530 -1.0 -6.7 glutamate-5-semialdehyde dehydrogenase compare
DDA3937_RS22405 -1.0 -1.4 IS110 family transposase compare
DDA3937_RS02550 -1.0 -2.1 Cd(II)/Pb(II)-responsive transcriptional regulator compare
DDA3937_RS08965 -1.0 -0.9 protease inhibitor I42 family protein compare
DDA3937_RS00785 -0.9 -1.3 cell-envelope stress modulator CpxP compare
DDA3937_RS01165 -0.9 -3.0 HesA/MoeB/ThiF family protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Glycerol in Dickeya dadantii 3937

For carbon source Glycerol across organisms