Experiment setATCH199 for Dickeya dadantii 3937

Compare to:

M9+glycerol

200 most detrimental genes:

  gene name fitness t score description  
DDA3937_RS18610 +7.8 32.6 RNA chaperone Hfq compare
DDA3937_RS13555 +6.7 38.5 flagellar motor stator protein MotA compare
DDA3937_RS15705 +6.4 32.4 cyclic-guanylate-specific phosphodiesterase compare
DDA3937_RS13550 +6.3 30.4 flagellar motor protein MotB compare
DDA3937_RS02685 +5.5 9.3 hypothetical protein compare
DDA3937_RS13340 +5.5 20.6 flagellin FliC compare
DDA3937_RS13565 +5.4 20.4 flagellar transcriptional regulator FlhD compare
DDA3937_RS13560 +4.9 21.4 flagellar transcriptional regulator FlhC compare
DDA3937_RS13495 +4.7 7.1 flagellar export chaperone FlgN compare
DDA3937_RS13435 +4.7 32.3 flagellar hook-associated protein FlgK compare
DDA3937_RS13430 +4.7 22.8 flagellar hook-associated protein FlgL compare
DDA3937_RS13300 +4.6 18.6 RNA polymerase sigma factor FliA compare
DDA3937_RS13405 +4.3 19.9 flagellar motor switch protein FliN compare
DDA3937_RS11465 +4.2 24.4 EAL domain-containing protein compare
DDA3937_RS13400 +4.0 23.0 flagellar motor switch protein FliM compare
DDA3937_RS13380 +4.0 25.1 flagellum-specific ATP synthase FliI compare
DDA3937_RS13390 +3.9 19.9 flagellar hook-length control protein FliK compare
DDA3937_RS13365 +3.9 26.0 flagellar M-ring protein FliF compare
DDA3937_RS13370 +3.8 20.6 flagellar motor switch protein FliG compare
DDA3937_RS13375 +3.8 11.5 flagellar assembly protein FliH compare
DDA3937_RS13510 +3.7 22.7 flagellar type III secretion system protein FlhB compare
DDA3937_RS13505 +3.6 24.0 flagellar biosynthesis protein FlhA compare
DDA3937_RS13470 +3.6 18.7 flagellar hook assembly protein FlgD compare
DDA3937_RS13410 +3.6 11.3 flagellar biosynthetic protein FliO compare
DDA3937_RS13480 +3.5 13.3 flagellar basal body rod protein FlgB compare
DDA3937_RS13450 +3.5 22.4 flagellar basal body L-ring protein FlgH compare
DDA3937_RS13330 +3.5 28.1 methyltransferase regulatory domain-containing protein compare
DDA3937_RS13385 +3.5 15.5 flagella biosynthesis chaperone FliJ compare
DDA3937_RS16110 +3.5 18.2 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DDA3937_RS13425 +3.4 19.1 flagellar type III secretion system protein FliR compare
DDA3937_RS13415 +3.4 18.4 flagellar type III secretion system pore protein FliP compare
DDA3937_RS13440 +3.4 16.3 flagellar assembly peptidoglycan hydrolase FlgJ compare
DDA3937_RS20820 +3.4 14.4 two-component system response regulator VfmH compare
DDA3937_RS13325 +3.4 15.4 DegT/DnrJ/EryC1/StrS family aminotransferase compare
DDA3937_RS13360 +3.3 8.0 flagellar hook-basal body complex protein FliE compare
DDA3937_RS13455 +3.3 11.6 flagellar basal-body rod protein FlgG compare
DDA3937_RS13465 +3.3 24.9 flagellar hook protein FlgE compare
DDA3937_RS06735 +3.3 15.6 dTDP-glucose 4,6-dehydratase compare
DDA3937_RS13460 +3.3 14.9 flagellar basal body rod protein FlgF compare
DDA3937_RS13320 +3.3 23.0 ATP-grasp domain-containing protein compare
DDA3937_RS13485 +3.2 13.4 flagellar basal body P-ring formation protein FlgA compare
DDA3937_RS13445 +3.1 14.3 flagellar basal body P-ring protein FlgI compare
DDA3937_RS13420 +3.1 13.1 flagellar biosynthesis protein FliQ compare
DDA3937_RS20815 +3.0 18.0 two-component system sensor histidine kinase VfmI compare
DDA3937_RS13475 +3.0 9.8 flagellar basal body rod protein FlgC compare
DDA3937_RS14630 +3.0 8.5 tRNA-Arg compare
DDA3937_RS20830 +3.0 12.9 ABC transporter ATP-binding protein compare
DDA3937_RS14380 +3.0 7.8 acetate kinase compare
DDA3937_RS20835 +2.9 16.6 AraC family transcriptional regulator VfmE compare
DDA3937_RS00055 +2.9 24.0 ribose operon transcriptional repressor RbsR compare
DDA3937_RS13395 +2.9 10.0 flagellar basal body-associated protein FliL compare
DDA3937_RS05320 +2.8 4.9 hypothetical protein compare
DDA3937_RS16550 +2.8 4.4 YfiR family protein compare
DDA3937_RS13545 +2.7 18.9 chemotaxis protein CheA compare
DDA3937_RS01695 +2.7 4.2 divisome-associated lipoprotein YraP compare
DDA3937_RS13540 +2.6 12.5 chemotaxis protein CheW compare
DDA3937_RS13315 +2.6 16.3 Gfo/Idh/MocA family oxidoreductase compare
DDA3937_RS06740 +2.5 12.6 glucose-1-phosphate thymidylyltransferase RfbA compare
DDA3937_RS18670 +2.5 10.2 ABC transporter permease compare
DDA3937_RS20475 +2.4 3.3 glycosyltransferase family 4 protein compare
DDA3937_RS10840 +2.4 9.2 hypothetical protein compare
DDA3937_RS19660 +2.4 14.0 4-alpha-glucanotransferase compare
DDA3937_RS06270 +2.4 1.8 tRNA-Met compare
DDA3937_RS18675 +2.3 5.8 ABC transporter ATP-binding protein compare
DDA3937_RS13520 +2.2 9.5 chemotaxis response regulator CheY compare
DDA3937_RS11185 +2.2 11.2 disulfide bond formation protein DsbB compare
DDA3937_RS05420 +2.2 12.0 exonuclease subunit SbcD compare
DDA3937_RS10845 +2.2 16.0 virulence factor SrfB compare
DDA3937_RS01920 +2.1 7.2 aspartate carbamoyltransferase regulatory subunit compare
DDA3937_RS10850 +2.0 13.5 virulence factor compare
DDA3937_RS13490 +2.0 1.8 anti-sigma-28 factor FlgM compare
DDA3937_RS02325 +2.0 1.6 HTH-type transcriptional activator RhaS compare
DDA3937_RS20455 +1.9 4.0 putative lipopolysaccharide heptosyltransferase III compare
DDA3937_RS22280 +1.9 2.1 GpE family phage tail protein compare
DDA3937_RS05415 +1.9 9.5 hypothetical protein compare
DDA3937_RS01505 +1.9 3.1 nucleoside diphosphate kinase regulator compare
DDA3937_RS04140 +1.8 2.3 hypothetical protein compare
DDA3937_RS00050 +1.8 8.3 ribokinase compare
DDA3937_RS00640 +1.8 3.0 cell division ATP-binding protein FtsE compare
DDA3937_RS05755 +1.8 4.6 pleiotropic regulatory protein RsmS compare
DDA3937_RS20700 +1.7 2.2 hypothetical protein compare
DDA3937_RS13310 +1.7 7.0 FkbM family methyltransferase compare
DDA3937_RS11970 +1.7 5.1 RNA chaperone ProQ compare
DDA3937_RS05035 +1.7 3.4 cysteine desulfurase sulfur acceptor subunit CsdE compare
DDA3937_RS13530 +1.7 8.1 protein-glutamate O-methyltransferase CheR compare
DDA3937_RS16195 +1.6 2.3 glutamate--cysteine ligase compare
DDA3937_RS02755 +1.6 3.0 diacylglycerol kinase compare
DDA3937_RS21095 +1.6 1.4 DUF1471 domain-containing protein compare
DDA3937_RS06765 +1.6 1.6 DUF616 domain-containing protein compare
DDA3937_RS14870 +1.5 3.0 YjfB family protein compare
DDA3937_RS19605 +1.5 2.5 Hsp33 family molecular chaperone HslO compare
DDA3937_RS00865 +1.5 1.6 triose-phosphate isomerase compare
DDA3937_RS00140 +1.5 5.8 ribosome-dependent GTPase TypA compare
DDA3937_RS03700 +1.5 3.1 inositol 2-dehydrogenase compare
DDA3937_RS22360 +1.5 11.5 deoxyribonuclease compare
DDA3937_RS00630 +1.5 2.0 16S rRNA (guanine(966)-N(2))-methyltransferase compare
DDA3937_RS20190 +1.5 2.0 HTH-type transcriptional regulator HdfR compare
DDA3937_RS14465 +1.5 2.5 tRNA pseudouridine(38-40) synthase TruA compare
DDA3937_RS20290 +1.5 6.8 transcription/translation regulatory transformer protein RfaH compare
DDA3937_RS01325 +1.5 2.6 hypothetical protein compare
DDA3937_RS10275 +1.5 2.3 DUF1315 family protein compare
DDA3937_RS00975 +1.5 2.1 Si-specific NAD(P)(+) transhydrogenase compare
DDA3937_RS21375 +1.4 3.2 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
DDA3937_RS14470 +1.4 2.1 aspartate-semialdehyde dehydrogenase compare
DDA3937_RS10500 +1.4 4.8 23S rRNA pseudouridine(2605) synthase RluB compare
DDA3937_RS09235 +1.4 2.6 1-phosphofructokinase compare
DDA3937_RS03190 +1.4 5.2 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC compare
DDA3937_RS18655 +1.4 9.6 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
DDA3937_RS23400 +1.4 1.7 hypothetical protein compare
DDA3937_RS21605 +1.4 5.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DDA3937_RS06870 +1.4 2.3 iron ABC transporter permease compare
DDA3937_RS12350 +1.4 1.8 thiol peroxidase compare
DDA3937_RS18890 +1.3 1.3 hypothetical protein compare
DDA3937_RS02915 +1.3 5.1 TetR/AcrR family transcriptional regulator compare
DDA3937_RS16130 +1.3 3.4 bifunctional chorismate mutase/prephenate dehydratase compare
DDA3937_RS07715 +1.3 6.9 TonB-dependent receptor compare
DDA3937_RS20885 +1.3 3.1 MarR family transcriptional regulator compare
DDA3937_RS13350 +1.3 3.7 flagellar export chaperone FliS compare
DDA3937_RS18660 +1.3 10.3 phosphomannomutase/phosphoglucomutase compare
DDA3937_RS15780 +1.3 5.4 ATP-dependent RNA helicase SrmB compare
DDA3937_RS19665 +1.3 5.0 maltodextrin phosphorylase compare
DDA3937_RS18665 +1.3 10.5 GDP-mannose 4,6-dehydratase compare
DDA3937_RS05895 +1.3 3.5 transcriptional regulator RcsB compare
DDA3937_RS10775 +1.3 7.9 TetR/AcrR family transcriptional regulator compare
DDA3937_RS13305 +1.3 6.0 hypothetical protein compare
DDA3937_RS12595 +1.3 8.6 transcriptional regulator SlyA compare
DDA3937_RS13615 +1.3 2.9 phage holin family protein compare
DDA3937_RS16065 +1.3 3.1 murein transglycosylase D compare
DDA3937_RS00925 +1.3 3.7 cell division protein FtsN compare
DDA3937_RS18080 +1.2 2.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DDA3937_RS22560 +1.2 1.8 membrane protein insertion efficiency factor YidD compare
DDA3937_RS00100 +1.2 8.8 thiol:disulfide interchange protein DsbA compare
DDA3937_RS07335 +1.2 2.3 DUF1971 domain-containing protein compare
DDA3937_RS18685 +1.2 7.5 WbeA compare
DDA3937_RS03620 +1.2 1.5 hypothetical protein compare
DDA3937_RS00900 +1.2 4.2 cell division protein ZapB compare
DDA3937_RS01515 +1.2 8.8 RNase adapter RapZ compare
DDA3937_RS08715 +1.2 3.2 tRNA dihydrouridine(16) synthase DusC compare
DDA3937_RS00420 +1.2 3.8 LacI family DNA-binding transcriptional regulator compare
DDA3937_RS23255 +1.1 4.5 aminodeoxychorismate lyase compare
DDA3937_RS11615 +1.1 2.1 type III secretion system stator protein SctL compare
DDA3937_RS22035 +1.1 2.2 immunity protein RhsIC compare
DDA3937_RS15545 +1.1 1.8 cysteine desulfurase compare
DDA3937_RS21370 +1.1 5.7 lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase compare
DDA3937_RS10530 +1.1 2.9 YciN family protein compare
DDA3937_RS05840 +1.1 6.3 TraB/GumN family protein conserved
DDA3937_RS20260 +1.1 1.5 membrane protein compare
DDA3937_RS10480 +1.1 3.2 glutamine amidotransferase compare
DDA3937_RS20990 +1.1 1.7 ABC transporter substrate-binding protein compare
DDA3937_RS13155 +1.1 2.8 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
DDA3937_RS09620 +1.0 2.5 glutathione S-transferase compare
DDA3937_RS13335 +1.0 1.7 IS200/IS605 family transposase compare
DDA3937_RS01135 +1.0 2.3 hypothetical protein compare
DDA3937_RS06145 +1.0 1.6 lipoyl(octanoyl) transferase LipB compare
DDA3937_RS09770 +1.0 0.7 fumarylacetoacetate hydrolase family protein compare
DDA3937_RS16005 +1.0 2.4 YacC family pilotin-like protein compare
DDA3937_RS18680 +1.0 2.5 GDP-L-fucose synthase compare
DDA3937_RS04105 +1.0 2.1 type VI secretion system tip protein VgrG compare
DDA3937_RS11830 +1.0 2.5 4-aminobutyrate--2-oxoglutarate transaminase compare
DDA3937_RS20715 +1.0 1.3 DUF1471 domain-containing protein compare
DDA3937_RS17395 +1.0 1.9 FCD domain-containing protein compare
DDA3937_RS21960 +1.0 3.4 helix-turn-helix transcriptional regulator compare
DDA3937_RS20420 +1.0 3.4 murein hydrolase activator EnvC compare
DDA3937_RS00920 +1.0 1.8 ATP-dependent protease subunit HslV compare
DDA3937_RS03420 +1.0 2.6 sugar transferase compare
DDA3937_RS03410 +1.0 7.5 polysaccharide biosynthesis protein compare
DDA3937_RS00980 +1.0 4.9 HTH-type transcriptional repressor FabR compare
DDA3937_RS00185 +0.9 2.8 DNA-directed RNA polymerase subunit omega compare
DDA3937_RS14110 +0.9 2.1 nitrate- and nitrite sensing domain-containing protein compare
DDA3937_RS04405 +0.9 4.2 GNAT family N-acetyltransferase compare
DDA3937_RS11590 +0.9 1.6 hypothetical protein compare
DDA3937_RS07730 +0.9 1.6 DHA2 family efflux MFS transporter permease subunit compare
DDA3937_RS00385 +0.9 2.3 DUF1471 domain-containing protein compare
DDA3937_RS14340 +0.9 4.0 transcriptional regulator LrhA compare
DDA3937_RS17985 +0.9 3.5 cell division protein ZapD compare
DDA3937_RS14095 +0.9 1.1 ABC transporter ATP-binding protein compare
DDA3937_RS21380 +0.9 4.4 bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA compare
DDA3937_RS17765 +0.9 2.8 ABC transporter ATP-binding protein compare
DDA3937_RS14930 +0.9 3.7 extracellular solute-binding protein compare
DDA3937_RS10375 +0.9 8.1 oligopeptide ABC transporter substrate-binding protein OppA compare
DDA3937_RS20465 +0.9 3.5 O-antigen ligase family protein compare
DDA3937_RS06260 +0.9 3.3 multidrug efflux SMR transporter compare
DDA3937_RS10380 +0.9 7.1 oligopeptide ABC transporter permease OppB compare
DDA3937_RS12850 +0.9 1.5 cell division protein ZapC compare
DDA3937_RS02765 +0.9 6.5 zinc uptake transcriptional repressor Zur compare
DDA3937_RS00490 +0.9 1.8 hypothetical protein compare
DDA3937_RS13945 +0.9 5.5 hypothetical protein compare
DDA3937_RS01995 +0.9 2.1 leucyl aminopeptidase compare
DDA3937_RS23520 +0.9 1.2 cell wall anchor protein compare
DDA3937_RS13805 +0.9 2.5 helix-turn-helix transcriptional regulator compare
DDA3937_RS17250 +0.9 1.3 hypothetical protein compare
DDA3937_RS03415 +0.9 2.3 NAD-dependent epimerase/dehydratase family protein compare
DDA3937_RS06645 +0.9 1.3 molybdenum ABC transporter ATP-binding protein ModC compare
DDA3937_RS21310 +0.9 2.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DDA3937_RS07235 +0.9 1.3 response regulator transcription factor compare
DDA3937_RS18575 +0.9 5.3 class 1 fructose-bisphosphatase compare
DDA3937_RS05335 +0.9 2.8 LysR family transcriptional regulator compare
DDA3937_RS18690 +0.9 3.4 glycosyltransferase compare
DDA3937_RS10095 +0.9 5.6 zinc ABC transporter ATP-binding protein ZnuC compare
DDA3937_RS05270 +0.9 2.5 DSD1 family PLP-dependent enzyme compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Glycerol in Dickeya dadantii 3937

For carbon source Glycerol across organisms