Experiment setATCH198 for Dickeya dadantii 3937

Compare to:

M9+glycerol

200 most important genes:

  gene name fitness t score description  
DDA3937_RS01665 -3.8 -19.9 glutamate synthase large subunit compare
DDA3937_RS18130 -3.7 -3.5 3-isopropylmalate dehydratase small subunit compare
DDA3937_RS20350 -3.7 -8.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
DDA3937_RS20355 -3.5 -12.5 acetylornithine deacetylase compare
DDA3937_RS20360 -3.3 -14.3 phosphoenolpyruvate carboxylase compare
DDA3937_RS18480 -3.1 -6.7 phosphoglycerate dehydrogenase compare
DDA3937_RS01660 -3.1 -10.8 FAD-dependent oxidoreductase compare
DDA3937_RS20340 -3.0 -5.3 argininosuccinate lyase compare
DDA3937_RS12525 -3.0 -7.9 orotidine-5'-phosphate decarboxylase compare
DDA3937_RS01940 -3.0 -9.2 ornithine carbamoyltransferase compare
DDA3937_RS06075 -2.9 -4.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DDA3937_RS04990 -2.9 -10.2 amino-acid N-acetyltransferase compare
DDA3937_RS20890 -2.8 -13.1 argininosuccinate synthase compare
DDA3937_RS17425 -2.8 -10.2 diaminopimelate decarboxylase compare
DDA3937_RS18410 -2.8 -9.0 homoserine kinase compare
DDA3937_RS01815 -2.8 -9.2 cystathionine beta-lyase compare
DDA3937_RS18305 -2.7 -10.3 carbamoyl-phosphate synthase large subunit compare
DDA3937_RS12610 -2.7 -7.5 Grx4 family monothiol glutaredoxin compare
DDA3937_RS09705 -2.7 -6.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
DDA3937_RS02545 -2.6 -9.6 heavy metal translocating P-type ATPase compare
DDA3937_RS18125 -2.6 -13.2 3-isopropylmalate dehydratase large subunit compare
DDA3937_RS18120 -2.6 -9.3 3-isopropylmalate dehydrogenase compare
DDA3937_RS10465 -2.6 -10.0 tryptophan synthase subunit beta compare
DDA3937_RS09590 -2.6 -5.3 leucine-responsive transcriptional regulator Lrp compare
DDA3937_RS09725 -2.5 -7.4 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
DDA3937_RS15815 -2.5 -1.2 tRNA-Val compare
DDA3937_RS20700 -2.5 -1.5 hypothetical protein compare
DDA3937_RS18310 -2.5 -9.7 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DDA3937_RS09720 -2.5 -7.7 imidazole glycerol phosphate synthase subunit HisH compare
DDA3937_RS20345 -2.4 -4.2 acetylglutamate kinase compare
DDA3937_RS20155 -2.4 -11.3 dihydroxy-acid dehydratase compare
DDA3937_RS18415 -2.4 -13.5 bifunctional aspartate kinase/homoserine dehydrogenase I compare
DDA3937_RS14475 -2.3 -5.1 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS10485 -2.3 -12.5 anthranilate synthase component 1 compare
DDA3937_RS09730 -2.3 -9.4 histidinol-phosphate transaminase compare
DDA3937_RS15110 -2.2 -5.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
DDA3937_RS09735 -2.2 -10.9 histidinol dehydrogenase compare
DDA3937_RS00950 -2.2 -12.4 cystathionine gamma-synthase compare
DDA3937_RS18405 -2.2 -8.9 threonine synthase compare
DDA3937_RS01530 -2.2 -3.6 RNA polymerase factor sigma-54 compare
DDA3937_RS09710 -2.2 -7.0 imidazole glycerol phosphate synthase subunit HisF compare
DDA3937_RS00125 -2.2 -2.6 nitrogen regulation protein NR(I) compare
DDA3937_RS18275 -2.1 -9.0 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
DDA3937_RS00890 -2.1 -10.6 glycerol kinase GlpK compare
DDA3937_RS01215 -2.1 -6.2 phosphoribosylamine--glycine ligase compare
DDA3937_RS20130 -2.1 -6.4 ketol-acid reductoisomerase compare
DDA3937_RS00640 -2.0 -1.9 cell division ATP-binding protein FtsE compare
DDA3937_RS02160 -2.0 -1.6 transketolase compare
DDA3937_RS02425 -2.0 -8.1 phosphoserine phosphatase compare
DDA3937_RS10580 -1.9 -2.7 transcription modulator YdgT compare
DDA3937_RS04315 -1.9 -3.2 RnfH family protein compare
DDA3937_RS10470 -1.9 -6.5 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DDA3937_RS15720 -1.9 -5.6 pyridoxine 5'-phosphate synthase compare
DDA3937_RS06295 -1.8 -7.1 asparagine synthase B compare
DDA3937_RS09715 -1.8 -2.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
DDA3937_RS15955 -1.8 -8.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
DDA3937_RS10475 -1.7 -6.5 anthranilate phosphoribosyltransferase compare
DDA3937_RS04960 -1.7 -2.3 thymidylate synthase compare
DDA3937_RS20545 -1.7 -2.3 DUF202 domain-containing protein compare
DDA3937_RS09670 -1.7 -5.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
DDA3937_RS01220 -1.7 -7.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DDA3937_RS23365 -1.7 -3.1 hypothetical protein compare
DDA3937_RS12915 -1.6 -14.2 aspartate/tyrosine/aromatic aminotransferase compare
DDA3937_RS12445 -1.6 -1.7 peptide ABC transporter permease SapB compare
DDA3937_RS08565 -1.6 -2.5 GTP 3',8-cyclase MoaA compare
DDA3937_RS04130 -1.6 -1.4 hypothetical protein compare
DDA3937_RS16530 -1.5 -10.3 glutamate-5-semialdehyde dehydrogenase compare
DDA3937_RS18585 -1.5 -1.1 adenylosuccinate synthase compare
DDA3937_RS20660 -1.5 -1.9 helix-turn-helix transcriptional regulator compare
DDA3937_RS15750 -1.5 -2.4 SoxR-reducing system protein RseC compare
DDA3937_RS19065 -1.5 -6.2 homoserine O-succinyltransferase compare
DDA3937_RS10540 -1.5 -1.6 HTH-type transcriptional regulator CysB compare
DDA3937_RS20385 -1.5 -4.9 HTH-type transcriptional regulator MetR compare
DDA3937_RS18490 -1.5 -6.8 LysR family transcriptional regulator ArgP compare
DDA3937_RS12780 -1.5 -3.6 Fe-S cluster assembly scaffold SufA compare
DDA3937_RS01155 -1.5 -4.8 thiazole synthase compare
DDA3937_RS00135 -1.5 -1.2 glutamate--ammonia ligase compare
DDA3937_RS01590 -1.5 -3.1 BolA family iron metabolism protein IbaG compare
DDA3937_RS13355 -1.4 -3.3 flagellar protein FliT compare
DDA3937_RS01225 -1.4 -1.3 16S ribosomal RNA compare
DDA3937_RS09345 -1.4 -1.1 IS200/IS605 family transposase compare
DDA3937_RS10370 -1.4 -2.7 YchE family NAAT transporter compare
DDA3937_RS04490 -1.4 -2.6 cysteine synthase A compare
DDA3937_RS22250 -1.4 -1.6 DUF2627 domain-containing protein compare
DDA3937_RS17305 -1.4 -2.4 pyrroline-5-carboxylate reductase compare
DDA3937_RS08600 -1.4 -5.4 ABC transporter ATP-binding protein compare
DDA3937_RS23340 -1.4 -1.7 ilvB operon leader peptide IvbL compare
DDA3937_RS20675 -1.4 -2.1 hypothetical protein compare
DDA3937_RS00895 -1.4 -8.4 aquaporin compare
DDA3937_RS10325 -1.4 -6.6 formyltetrahydrofolate deformylase compare
DDA3937_RS15655 -1.4 -10.3 phosphoribosylformylglycinamidine synthase compare
DDA3937_RS13220 -1.4 -3.6 glucan biosynthesis protein G compare
DDA3937_RS15765 -1.3 -10.3 RNA polymerase sigma factor RpoE compare
DDA3937_RS01600 -1.3 -7.2 outer membrane-stress sensor serine endopeptidase DegS compare
DDA3937_RS08590 -1.3 -7.0 iron ABC transporter substrate-binding protein compare
DDA3937_RS16535 -1.3 -3.3 glutamate 5-kinase compare
DDA3937_RS10575 -1.3 -3.7 electron transport complex subunit RsxA compare
DDA3937_RS04480 -1.3 -4.1 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DDA3937_RS16095 -1.3 -2.9 16S ribosomal RNA compare
DDA3937_RS01820 -1.3 -3.0 tol-pal system-associated acyl-CoA thioesterase compare
DDA3937_RS10405 -1.3 -2.4 cardiolipin synthase compare
DDA3937_RS16245 -1.3 -2.0 recombinase RecA compare
DDA3937_RS10435 -1.3 -1.7 septation protein A compare
DDA3937_RS00835 -1.3 -1.2 2TM domain-containing protein compare
DDA3937_RS10460 -1.3 -3.8 tryptophan synthase subunit alpha compare
DDA3937_RS00655 -1.3 -3.7 aspartate 1-decarboxylase autocleavage activator PanM compare
DDA3937_RS12450 -1.2 -2.6 peptide ABC transporter permease SapC compare
DDA3937_RS14775 -1.2 -1.2 type II secretion system minor pseudopilin GspI compare
DDA3937_RS09585 -1.2 -1.3 thioredoxin-disulfide reductase compare
DDA3937_RS05595 -1.2 -1.1 protoheme IX farnesyltransferase compare
DDA3937_RS00545 -1.2 -5.5 cellulose synthase compare
DDA3937_RS16050 -1.2 -1.7 ribonuclease HI compare
DDA3937_RS10570 -1.2 -4.4 electron transport complex subunit RsxB compare
DDA3937_RS11210 -1.2 -3.5 septum site-determining protein MinD compare
DDA3937_RS09575 -1.2 -0.8 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
DDA3937_RS10410 -1.2 -1.5 IS200/IS605 family transposase compare
DDA3937_RS18115 -1.2 -4.7 2-isopropylmalate synthase compare
DDA3937_RS06025 -1.2 -5.2 phosphoribosylformylglycinamidine cyclo-ligase compare
DDA3937_RS02890 -1.2 -3.7 FAD:protein FMN transferase ApbE compare
DDA3937_RS10340 -1.2 -7.2 two-component system response regulator RssB compare
DDA3937_RS15965 -1.2 -6.9 aspartate 1-decarboxylase compare
DDA3937_RS02280 -1.2 -1.7 chorismate mutase compare
DDA3937_RS16935 -1.2 -2.2 phosphoadenylyl-sulfate reductase compare
DDA3937_RS05555 -1.1 -6.2 2-dehydropantoate 2-reductase compare
DDA3937_RS16945 -1.1 -7.4 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
DDA3937_RS05470 -1.1 -2.4 tRNA guanosine(34) transglycosylase Tgt compare
DDA3937_RS13785 -1.1 -1.6 helix-turn-helix transcriptional regulator compare
DDA3937_RS16755 -1.1 -4.5 transcriptional repressor MprA compare
DDA3937_RS23075 -1.1 -2.5 hypothetical protein compare
DDA3937_RS15335 -1.1 -3.9 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
DDA3937_RS12800 -1.1 -2.9 AI-2E family transporter YdiK compare
DDA3937_RS10440 -1.1 -2.2 UPF0259 family protein compare
DDA3937_RS00905 -1.1 -3.8 ribonuclease E activity regulator RraA compare
DDA3937_RS01170 -1.1 -4.8 thiamine phosphate synthase compare
DDA3937_RS22485 -1.1 -2.4 hypothetical protein compare
DDA3937_RS20535 -1.1 -5.8 orotate phosphoribosyltransferase compare
DDA3937_RS21535 -1.1 -3.0 GTP cyclohydrolase II compare
DDA3937_RS14095 -1.0 -1.0 ABC transporter ATP-binding protein compare
DDA3937_RS12240 -1.0 -1.7 acid resistance repetitive basic protein Asr compare
DDA3937_RS00170 -1.0 -5.5 ATP-dependent DNA helicase RecG compare
DDA3937_RS17955 -1.0 -4.8 carboxylating nicotinate-nucleotide diphosphorylase compare
DDA3937_RS06235 -1.0 -4.3 CNNM family magnesium/cobalt transport protein CorC compare
DDA3937_RS23170 -1.0 -1.8 YciY family protein compare
DDA3937_RS12460 -1.0 -4.3 peptide ABC transporter ATP-binding protein SapF compare
DDA3937_RS06890 -1.0 -4.0 DNA starvation/stationary phase protection protein compare
DDA3937_RS10560 -1.0 -2.5 electron transport complex subunit RsxD compare
DDA3937_RS11975 -1.0 -2.2 GAF domain-containing protein compare
DDA3937_RS06685 -1.0 -2.6 iron-sulfur cluster carrier protein ApbC compare
DDA3937_RS11090 -1.0 -1.7 CesT family type III secretion system chaperone compare
DDA3937_RS20415 -1.0 -1.7 rhodanese-like domain-containing protein compare
DDA3937_RS05775 -1.0 -1.4 adenine phosphoribosyltransferase compare
DDA3937_RS08400 -1.0 -1.4 H-NS histone family protein compare
DDA3937_RS17180 -1.0 -3.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DDA3937_RS22030 -1.0 -1.6 multidrug efflux pump-associated protein, AcrZ family compare
DDA3937_RS09740 -1.0 -1.9 ATP phosphoribosyltransferase compare
DDA3937_RS05105 -1.0 -2.6 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
DDA3937_RS08595 -1.0 -4.9 iron ABC transporter permease compare
DDA3937_RS03100 -1.0 -1.6 DEAD/DEAH family ATP-dependent RNA helicase compare
DDA3937_RS12765 -1.0 -4.0 Fe-S cluster assembly protein SufD compare
DDA3937_RS19620 -1.0 -1.7 two-component system response regulator OmpR compare
DDA3937_RS04895 -0.9 -2.1 oxidative damage protection protein compare
DDA3937_RS21990 -0.9 -2.1 hypothetical protein compare
DDA3937_RS03485 -0.9 -1.8 hypothetical protein compare
DDA3937_RS14750 -0.9 -2.4 prepilin peptidase compare
DDA3937_RS02900 -0.9 -2.2 helix-turn-helix transcriptional regulator compare
DDA3937_RS18980 -0.9 -2.9 fumarate reductase subunit FrdD compare
DDA3937_RS01175 -0.9 -4.5 phosphomethylpyrimidine synthase ThiC compare
DDA3937_RS23400 -0.9 -1.4 hypothetical protein compare
DDA3937_RS12500 -0.9 -1.3 carbon starvation protein A compare
DDA3937_RS06395 -0.9 -2.7 YbfA family protein compare
DDA3937_RS18425 -0.9 -4.3 two-component system response regulator ArcA compare
DDA3937_RS14665 -0.9 -4.7 Fe(3+)-siderophore ABC transporter permease compare
DDA3937_RS09075 -0.9 -1.0 hypothetical protein compare
DDA3937_RS18170 -0.9 -5.2 acetolactate synthase large subunit compare
DDA3937_RS07180 -0.9 -2.7 VOC family protein compare
DDA3937_RS01165 -0.9 -3.7 HesA/MoeB/ThiF family protein compare
DDA3937_RS18010 -0.9 -0.6 DUF721 domain-containing protein compare
DDA3937_RS04310 -0.9 -1.3 type II toxin-antitoxin system RatA family toxin compare
DDA3937_RS19450 -0.9 -4.4 aspartate aminotransferase family protein compare
DDA3937_RS16940 -0.8 -5.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
DDA3937_RS12245 -0.8 -2.1 serine protease compare
DDA3937_RS07760 -0.8 -1.4 iron ABC transporter permease compare
DDA3937_RS13905 -0.8 -2.7 hypothetical protein compare
DDA3937_RS10965 -0.8 -3.6 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha compare
DDA3937_RS16545 -0.8 -4.1 diguanylate cyclase compare
DDA3937_RS00155 -0.8 -4.2 fatty acid biosynthesis protein FabY compare
DDA3937_RS15115 -0.8 -2.2 HAAAP family serine/threonine permease compare
DDA3937_RS18220 -0.8 -3.2 branched-chain amino acid ABC transporter permease compare
DDA3937_RS12850 -0.8 -1.4 cell division protein ZapC compare
DDA3937_RS21795 -0.8 -1.7 CopG family transcriptional regulator compare
DDA3937_RS10720 -0.8 -3.0 hypothetical protein compare
DDA3937_RS10755 -0.8 -1.6 paraquat-inducible protein A compare
DDA3937_RS06480 -0.8 -1.3 cytochrome ubiquinol oxidase subunit I compare
DDA3937_RS06350 -0.8 -2.3 replication initiation negative regulator SeqA compare
DDA3937_RS06545 -0.8 -4.2 quinolinate synthase NadA compare
DDA3937_RS14905 -0.8 -1.3 PTS transporter subunit EIIB compare
DDA3937_RS20315 -0.8 -2.8 Sec-independent protein translocase subunit TatA compare
DDA3937_RS20805 -0.8 -1.8 DUF2807 domain-containing protein compare
DDA3937_RS10960 -0.8 -3.4 Re/Si-specific NAD(P)(+) transhydrogenase subunit beta compare
DDA3937_RS13600 -0.8 -3.1 cytochrome b562 compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Glycerol in Dickeya dadantii 3937

For carbon source Glycerol across organisms