Experiment setATCH196 for Dickeya dadantii 3937

Compare to:

PDB

200 most important genes:

  gene name fitness t score description  
DDA3937_RS00600 -3.4 -1.1 DcrB family lipoprotein compare
DDA3937_RS09775 -3.2 -1.1 [citrate (pro-3S)-lyase] ligase compare
DDA3937_RS23190 -3.0 -1.5 hypothetical protein compare
DDA3937_RS15405 -3.0 -2.9 hypothetical protein compare
DDA3937_RS12245 -2.9 -2.5 serine protease compare
DDA3937_RS19615 -2.8 -3.4 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS07235 -2.8 -2.0 response regulator transcription factor compare
DDA3937_RS03355 -2.8 -1.6 tRNA-Gly compare
DDA3937_RS00025 -2.8 -17.9 low affinity potassium transporter Kup compare
DDA3937_RS11970 -2.8 -2.7 RNA chaperone ProQ compare
DDA3937_RS23495 -2.7 -1.9 hypothetical protein compare
DDA3937_RS11965 -2.7 -8.6 carboxy terminal-processing peptidase compare
DDA3937_RS14635 -2.7 -2.1 NPP1 family protein compare
DDA3937_RS04130 -2.7 -1.6 hypothetical protein compare
DDA3937_RS13335 -2.6 -1.5 IS200/IS605 family transposase compare
DDA3937_RS15765 -2.5 -14.1 RNA polymerase sigma factor RpoE compare
DDA3937_RS00130 -2.5 -6.3 nitrogen regulation protein NR(II) compare
DDA3937_RS13920 -2.5 -1.2 CcdB family protein compare
DDA3937_RS18145 -2.5 -2.6 hypothetical protein compare
DDA3937_RS10475 -2.5 -7.6 anthranilate phosphoribosyltransferase compare
DDA3937_RS09095 -2.4 -1.7 AlpA family phage regulatory protein compare
DDA3937_RS10480 -2.4 -1.7 glutamine amidotransferase compare
DDA3937_RS09345 -2.4 -0.8 IS200/IS605 family transposase compare
DDA3937_RS10485 -2.4 -9.8 anthranilate synthase component 1 compare
DDA3937_RS01600 -2.4 -8.9 outer membrane-stress sensor serine endopeptidase DegS compare
DDA3937_RS23020 -2.4 -0.8 hypothetical protein compare
DDA3937_RS20265 -2.4 -0.8 YeeE/YedE family protein compare
DDA3937_RS06770 -2.4 -1.4 oligosaccharide flippase family protein compare
DDA3937_RS16970 -2.3 -3.5 7-carboxy-7-deazaguanine synthase QueE compare
DDA3937_RS00135 -2.3 -1.3 glutamate--ammonia ligase compare
DDA3937_RS06075 -2.3 -3.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DDA3937_RS21265 -2.3 -9.7 oligopeptidase A compare
DDA3937_RS02965 -2.3 -1.4 transcriptional regulator ArgR compare
DDA3937_RS10465 -2.2 -6.7 tryptophan synthase subunit beta compare
DDA3937_RS06715 -2.2 -1.9 protein-tyrosine-phosphatase compare
DDA3937_RS14595 -2.2 -4.2 phosphohistidine phosphatase SixA compare
DDA3937_RS00640 -2.2 -1.7 cell division ATP-binding protein FtsE compare
DDA3937_RS00835 -2.2 -1.5 2TM domain-containing protein compare
DDA3937_RS18080 -2.2 -1.7 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DDA3937_RS02325 -2.2 -1.1 HTH-type transcriptional activator RhaS compare
DDA3937_RS05150 -2.2 -3.9 sigma E protease regulator RseP compare
DDA3937_RS14870 -2.2 -1.7 YjfB family protein compare
DDA3937_RS05105 -2.1 -2.9 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
DDA3937_RS18010 -2.1 -0.9 DUF721 domain-containing protein compare
DDA3937_RS11210 -2.1 -3.5 septum site-determining protein MinD compare
DDA3937_RS09770 -2.1 -1.3 fumarylacetoacetate hydrolase family protein compare
DDA3937_RS22030 -2.1 -2.1 multidrug efflux pump-associated protein, AcrZ family compare
DDA3937_RS09010 -2.1 -3.1 transposase compare
DDA3937_RS05670 -2.1 -2.8 7-cyano-7-deazaguanine synthase QueC compare
DDA3937_RS10460 -2.0 -6.1 tryptophan synthase subunit alpha compare
DDA3937_RS12500 -2.0 -2.0 carbon starvation protein A compare
DDA3937_RS00900 -2.0 -4.2 cell division protein ZapB compare
DDA3937_RS03095 -2.0 -6.2 lipoprotein NlpI compare
DDA3937_RS16005 -2.0 -2.8 YacC family pilotin-like protein compare
DDA3937_RS03400 -1.9 -1.9 hypothetical protein compare
DDA3937_RS14630 -1.9 -3.1 tRNA-Arg compare
DDA3937_RS05050 -1.9 -3.1 transcriptional regulator GcvA compare
DDA3937_RS12885 -1.9 -10.4 aminopeptidase N compare
DDA3937_RS10515 -1.8 -6.3 protease SohB compare
DDA3937_RS07795 -1.8 -1.8 GNAT family N-acetyltransferase compare
DDA3937_RS21045 -1.8 -9.1 ROK family transcriptional regulator compare
DDA3937_RS04960 -1.8 -1.7 thymidylate synthase compare
DDA3937_RS13170 -1.8 -6.5 dihydroorotase compare
DDA3937_RS11445 -1.8 -5.9 DNA-binding transcriptional regulator KdgR compare
DDA3937_RS19395 -1.8 -4.6 peptidylprolyl isomerase compare
DDA3937_RS00970 -1.8 -2.3 DNA-binding transcriptional regulator OxyR compare
DDA3937_RS15570 -1.8 -4.3 iron ABC transporter permease compare
DDA3937_RS05465 -1.8 -4.4 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
DDA3937_RS06025 -1.8 -5.6 phosphoribosylformylglycinamidine cyclo-ligase compare
DDA3937_RS04430 -1.7 -2.4 Hcp family type VI secretion system effector compare
DDA3937_RS06355 -1.7 -7.4 alpha-D-glucose phosphate-specific phosphoglucomutase compare
DDA3937_RS14360 -1.7 -1.8 sugar phosphatase compare
DDA3937_RS18610 -1.7 -5.9 RNA chaperone Hfq compare
DDA3937_RS09745 -1.7 -4.2 SDR family oxidoreductase compare
DDA3937_RS13795 -1.7 -2.8 helix-turn-helix domain-containing protein compare
DDA3937_RS02545 -1.7 -4.9 heavy metal translocating P-type ATPase compare
DDA3937_RS13220 -1.7 -3.5 glucan biosynthesis protein G compare
DDA3937_RS10985 -1.7 -2.1 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS13060 -1.6 -2.0 penicillin-binding protein activator LpoB compare
DDA3937_RS18520 -1.6 -7.1 erythrose-4-phosphate dehydrogenase compare
DDA3937_RS14775 -1.6 -1.1 type II secretion system minor pseudopilin GspI compare
DDA3937_RS05265 -1.6 -4.2 ornithine cyclodeaminase family protein compare
DDA3937_RS13055 -1.6 -2.7 thiamine kinase compare
DDA3937_RS10580 -1.6 -2.0 transcription modulator YdgT compare
DDA3937_RS08065 -1.6 -4.1 alpha/beta hydrolase compare
DDA3937_RS07905 -1.6 -3.5 EVE domain-containing protein compare
DDA3937_RS03250 -1.6 -1.4 glycine cleavage system protein GcvH compare
DDA3937_RS12440 -1.6 -3.3 peptide ABC transporter substrate-binding protein SapA compare
DDA3937_RS15655 -1.6 -11.3 phosphoribosylformylglycinamidine synthase compare
DDA3937_RS19620 -1.6 -2.7 two-component system response regulator OmpR compare
DDA3937_RS02265 -1.6 -2.2 AAA family ATPase compare
DDA3937_RS19015 -1.6 -6.4 glucose-6-phosphate isomerase compare
DDA3937_RS15745 -1.5 -3.2 elongation factor 4 compare
DDA3937_RS13050 -1.5 -3.7 beta-N-acetylhexosaminidase compare
DDA3937_RS10735 -1.5 -5.1 dicarboxylate transporter/tellurite-resistance protein TehA compare
DDA3937_RS21605 -1.5 -4.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DDA3937_RS03565 -1.5 -3.9 MarR family transcriptional regulator compare
DDA3937_RS12855 -1.5 -5.0 quinone-dependent dihydroorotate dehydrogenase compare
DDA3937_RS17155 -1.5 -6.4 translocation/assembly module TamB compare
DDA3937_RS04340 -1.5 -5.7 Nramp family divalent metal transporter compare
DDA3937_RS09825 -1.5 -4.1 DUF496 family protein compare
DDA3937_RS12345 -1.5 -2.2 murein tripeptide amidase MpaA compare
DDA3937_RS14910 -1.5 -7.5 beta-galactosidase compare
DDA3937_RS21695 -1.5 -3.7 tetratricopeptide repeat protein compare
DDA3937_RS18560 -1.5 -2.6 glutathione synthase compare
DDA3937_RS21140 -1.5 -2.9 MarR family transcriptional regulator compare
DDA3937_RS01775 -1.5 -4.5 NAD(P)H-dependent oxidoreductase compare
DDA3937_RS13930 -1.5 -2.7 transposase compare
DDA3937_RS15420 -1.5 -4.2 IMP dehydrogenase compare
DDA3937_RS03265 -1.5 -2.7 HD domain-containing protein compare
DDA3937_RS08555 -1.4 -1.2 DUF2474 domain-containing protein compare
DDA3937_RS15110 -1.4 -4.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
DDA3937_RS12850 -1.4 -1.8 cell division protein ZapC compare
DDA3937_RS05615 -1.4 -1.2 cytochrome o ubiquinol oxidase subunit II compare
DDA3937_RS12450 -1.4 -2.1 peptide ABC transporter permease SapC compare
DDA3937_RS15510 -1.4 -3.2 aminopeptidase PepB compare
DDA3937_RS12660 -1.4 -1.9 type II secretion system protein M compare
DDA3937_RS19780 -1.4 -1.1 gluconokinase compare
DDA3937_RS10440 -1.4 -2.0 UPF0259 family protein compare
DDA3937_RS12225 -1.4 -3.1 hypothetical protein compare
DDA3937_RS20710 -1.4 -3.0 hypothetical protein compare
DDA3937_RS16490 -1.4 -1.0 hypothetical protein compare
DDA3937_RS01000 -1.4 -1.3 glutamate racemase compare
DDA3937_RS18790 -1.4 -2.5 IS110-like element ISEch3 family transposase compare
DDA3937_RS12085 -1.4 -3.5 DNA endonuclease SmrA compare
DDA3937_RS20535 -1.4 -5.9 orotate phosphoribosyltransferase compare
DDA3937_RS17160 -1.4 -5.3 outer membrane protein assembly factor compare
DDA3937_RS13620 -1.4 -3.2 glycoside hydrolase family 104 protein compare
DDA3937_RS04140 -1.4 -0.7 hypothetical protein compare
DDA3937_RS22450 -1.4 -1.5 NAD-dependent dehydratase compare
DDA3937_RS08355 -1.3 -2.5 type II toxin-antitoxin system RelE/ParE family toxin compare
DDA3937_RS17315 -1.3 -3.5 YggU family protein compare
DDA3937_RS21340 -1.3 -1.8 helix-turn-helix transcriptional regulator compare
DDA3937_RS15350 -1.3 -2.1 amino acid ABC transporter permease compare
DDA3937_RS21205 -1.3 -2.6 Lrp/AsnC family transcriptional regulator compare
DDA3937_RS05775 -1.3 -1.3 adenine phosphoribosyltransferase compare
DDA3937_RS18615 -1.3 -1.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
DDA3937_RS08400 -1.3 -1.4 H-NS histone family protein compare
DDA3937_RS08135 -1.3 -3.6 LysR family transcriptional regulator compare
DDA3937_RS23465 -1.3 -3.3 hypothetical protein compare
DDA3937_RS07575 -1.3 -2.4 hypothetical protein compare
DDA3937_RS04315 -1.3 -2.8 RnfH family protein compare
DDA3937_RS08605 -1.3 -2.7 Bax inhibitor-1/YccA family protein compare
DDA3937_RS06295 -1.3 -6.5 asparagine synthase B compare
DDA3937_RS14435 -1.3 -8.9 amidophosphoribosyltransferase compare
DDA3937_RS12525 -1.3 -4.1 orotidine-5'-phosphate decarboxylase compare
DDA3937_RS07005 -1.3 -1.5 type I addiction module toxin, SymE family compare
DDA3937_RS10470 -1.3 -4.2 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DDA3937_RS18480 -1.3 -4.7 phosphoglycerate dehydrogenase compare
DDA3937_RS03420 -1.3 -2.0 sugar transferase compare
DDA3937_RS01645 -1.3 -2.6 stringent starvation protein A compare
DDA3937_RS16665 -1.2 -5.1 MurR/RpiR family transcriptional regulator compare
DDA3937_RS22270 -1.2 -1.3 type I addiction module toxin, SymE family compare
DDA3937_RS00645 -1.2 -2.9 cell division protein FtsX compare
DDA3937_RS20545 -1.2 -1.3 DUF202 domain-containing protein compare
DDA3937_RS03495 -1.2 -2.0 mandelate racemase family protein compare
DDA3937_RS19700 -1.2 -1.2 EAL domain-containing protein compare
DDA3937_RS12460 -1.2 -4.0 peptide ABC transporter ATP-binding protein SapF compare
DDA3937_RS01715 -1.2 -4.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
DDA3937_RS01220 -1.2 -6.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DDA3937_RS02340 -1.2 -3.0 hypothetical protein compare
DDA3937_RS23045 -1.2 -0.8 stress response protein AzuC compare
DDA3937_RS17310 -1.2 -3.4 YggT family protein compare
DDA3937_RS18600 -1.2 -1.2 FtsH protease activity modulator HflK compare
DDA3937_RS14440 -1.2 -4.9 colicin V production protein compare
DDA3937_RS12430 -1.2 -1.4 phage shock protein operon transcriptional activator compare
DDA3937_RS21595 -1.2 -2.6 F0F1 ATP synthase subunit I compare
DDA3937_RS21230 -1.2 -3.6 GntR family transcriptional regulator compare
DDA3937_RS05560 -1.2 -1.3 YajQ family cyclic di-GMP-binding protein compare
DDA3937_RS19005 -1.2 -1.5 DUF4156 domain-containing protein compare
DDA3937_RS11500 -1.2 -3.2 two-component system response regulator PhoP compare
DDA3937_RS01740 -1.2 -2.4 outer membrane channel protein TolC compare
DDA3937_RS02595 -1.1 -4.2 glycosyltransferase compare
DDA3937_RS03300 -1.1 -1.1 site-specific tyrosine recombinase XerD compare
DDA3937_RS18585 -1.1 -1.1 adenylosuccinate synthase compare
DDA3937_RS07110 -1.1 -1.5 DUF1611 domain-containing protein compare
DDA3937_RS17015 -1.1 -8.1 GTP diphosphokinase compare
DDA3937_RS03965 -1.1 -3.4 helix-turn-helix transcriptional regulator compare
DDA3937_RS14385 -1.1 -3.3 phosphate acetyltransferase compare
DDA3937_RS18960 -1.1 -1.7 elongation factor P--(R)-beta-lysine ligase compare
DDA3937_RS04125 -1.1 -2.6 acetyltransferase compare
DDA3937_RS02455 -1.1 -2.2 stress response protein compare
DDA3937_RS11825 -1.1 -3.8 NAD-dependent succinate-semialdehyde dehydrogenase compare
DDA3937_RS11715 -1.1 -2.6 hypothetical protein compare
DDA3937_RS11335 -1.1 -2.7 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DDA3937_RS23035 -1.1 -3.3 Fic family protein compare
DDA3937_RS14610 -1.1 -1.0 YfcZ/YiiS family protein compare
DDA3937_RS15340 -1.1 -1.5 hydroxyethylthiazole kinase compare
DDA3937_RS20420 -1.1 -2.9 murein hydrolase activator EnvC compare
DDA3937_RS21820 -1.1 -2.8 GNAT family N-acetyltransferase compare
DDA3937_RS18860 -1.1 -3.4 glycoside hydrolase family protein compare
DDA3937_RS04420 -1.1 -2.7 Dyp-type peroxidase compare
DDA3937_RS13785 -1.1 -1.2 helix-turn-helix transcriptional regulator compare
DDA3937_RS11205 -1.1 -3.0 septum site-determining protein MinC compare
DDA3937_RS15710 -1.1 -2.3 YfhL family 4Fe-4S dicluster ferredoxin compare
DDA3937_RS04080 -1.1 -2.8 helix-turn-helix domain-containing protein compare
DDA3937_RS06475 -1.1 -1.2 succinate--CoA ligase subunit alpha compare
DDA3937_RS01755 -1.1 -5.2 3',5'-cyclic-AMP phosphodiesterase compare
DDA3937_RS06360 -1.1 -0.9 EamA family transporter compare
DDA3937_RS14225 -1.1 -0.9 hydrogenase maturation nickel metallochaperone HypA compare


Specific Phenotypes

For 1 genes in this experiment

For control kanamycin in Dickeya dadantii 3937

For control kanamycin across organisms