Experiment setATCH196 for Dickeya dadantii 3937

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PDB

200 most detrimental genes:

  gene name fitness t score description  
DDA3937_RS10395 +3.6 32.2 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF compare
DDA3937_RS10380 +3.5 31.2 oligopeptide ABC transporter permease OppB compare
DDA3937_RS10390 +3.4 29.9 ABC transporter ATP-binding protein compare
DDA3937_RS10385 +3.4 29.1 oligopeptide ABC transporter permease OppC compare
DDA3937_RS10375 +3.4 30.9 oligopeptide ABC transporter substrate-binding protein OppA compare
DDA3937_RS00890 +3.2 22.7 glycerol kinase GlpK compare
DDA3937_RS15985 +3.2 12.2 hypoxanthine phosphoribosyltransferase compare
DDA3937_RS14380 +3.0 5.0 acetate kinase compare
DDA3937_RS02765 +3.0 18.6 zinc uptake transcriptional repressor Zur compare
DDA3937_RS20475 +3.0 3.2 glycosyltransferase family 4 protein compare
DDA3937_RS23165 +2.8 8.2 hypothetical protein compare
DDA3937_RS06705 +2.7 18.0 TerC family protein compare
DDA3937_RS06235 +2.7 12.9 CNNM family magnesium/cobalt transport protein CorC compare
DDA3937_RS20820 +2.7 16.9 two-component system response regulator VfmH compare
DDA3937_RS00895 +2.7 19.3 aquaporin compare
DDA3937_RS20815 +2.5 16.7 two-component system sensor histidine kinase VfmI compare
DDA3937_RS07715 +2.5 16.7 TonB-dependent receptor compare
DDA3937_RS20470 +2.5 10.5 glycosyltransferase family 9 protein compare
DDA3937_RS20830 +2.5 11.1 ABC transporter ATP-binding protein compare
DDA3937_RS07760 +2.4 6.3 iron ABC transporter permease compare
DDA3937_RS00185 +2.4 7.8 DNA-directed RNA polymerase subunit omega compare
DDA3937_RS20835 +2.4 15.1 AraC family transcriptional regulator VfmE compare
DDA3937_RS21095 +2.4 2.0 DUF1471 domain-containing protein compare
DDA3937_RS00785 +2.3 2.3 cell-envelope stress modulator CpxP compare
DDA3937_RS07750 +2.3 4.2 iron-siderophore ABC transporter substrate-binding protein compare
DDA3937_RS19875 +2.2 11.7 magnesium/cobalt transporter CorA compare
DDA3937_RS12890 +2.2 10.2 nicotinate phosphoribosyltransferase compare
DDA3937_RS22435 +2.2 3.1 AlpA family transcriptional regulator compare
DDA3937_RS00020 +2.2 17.3 ATPase RavA compare
DDA3937_RS19915 +2.2 1.8 class I adenylate cyclase compare
DDA3937_RS07765 +2.2 4.2 ABC transporter ATP-binding protein compare
DDA3937_RS01820 +2.1 6.7 tol-pal system-associated acyl-CoA thioesterase compare
DDA3937_RS11180 +2.1 6.7 fatty acid metabolism transcriptional regulator FadR compare
DDA3937_RS18670 +2.1 5.2 ABC transporter permease compare
DDA3937_RS01375 +2.1 5.8 tRNA dihydrouridine synthase DusB compare
DDA3937_RS20110 +2.0 1.1 peptidylprolyl isomerase compare
DDA3937_RS03410 +2.0 14.0 polysaccharide biosynthesis protein compare
DDA3937_RS00015 +2.0 15.6 ATPase RavA stimulator ViaA compare
DDA3937_RS14475 +2.0 8.2 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS12920 +2.0 2.2 MBL fold metallo-hydrolase compare
DDA3937_RS19910 +2.0 4.7 iron donor protein CyaY compare
DDA3937_RS09585 +2.0 3.4 thioredoxin-disulfide reductase compare
DDA3937_RS13615 +1.9 4.3 phage holin family protein compare
DDA3937_RS18135 +1.9 4.8 siderophore-interacting protein compare
DDA3937_RS20455 +1.9 3.3 putative lipopolysaccharide heptosyltransferase III compare
DDA3937_RS02410 +1.9 2.4 5-formyltetrahydrofolate cyclo-ligase compare
DDA3937_RS22280 +1.9 1.8 GpE family phage tail protein compare
DDA3937_RS04220 +1.8 5.3 hypothetical protein compare
DDA3937_RS13970 +1.7 2.5 type II toxin-antitoxin system CcdA family antitoxin compare
DDA3937_RS15155 +1.7 5.0 exopolyphosphatase compare
DDA3937_RS01700 +1.7 7.4 DnaA initiator-associating protein DiaA compare
DDA3937_RS09515 +1.7 4.4 arginine ABC transporter ATP-binding protein ArtP compare
DDA3937_RS04480 +1.6 6.2 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DDA3937_RS08480 +1.6 8.0 NAD-dependent malic enzyme compare
DDA3937_RS18675 +1.6 3.5 ABC transporter ATP-binding protein compare
DDA3937_RS00775 +1.6 3.1 envelope stress sensor histidine kinase CpxA compare
DDA3937_RS00975 +1.6 2.3 Si-specific NAD(P)(+) transhydrogenase compare
DDA3937_RS18275 +1.6 9.0 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
DDA3937_RS18680 +1.5 5.3 GDP-L-fucose synthase compare
DDA3937_RS02395 +1.5 1.2 Xaa-Pro aminopeptidase compare
DDA3937_RS21960 +1.5 4.3 helix-turn-helix transcriptional regulator compare
DDA3937_RS20305 +1.5 5.9 Sec-independent protein translocase subunit TatC compare
DDA3937_RS09070 +1.4 2.2 hypothetical protein compare
DDA3937_RS18760 +1.4 5.4 MarR family transcriptional regulator compare
DDA3937_RS18665 +1.4 8.9 GDP-mannose 4,6-dehydratase compare
DDA3937_RS04555 +1.3 2.2 DNA-3-methyladenine glycosylase 2 family protein compare
DDA3937_RS02740 +1.3 2.5 chorismate lyase compare
DDA3937_RS20700 +1.3 1.5 hypothetical protein compare
DDA3937_RS09995 +1.3 9.2 ribosomal protein S5-alanine N-acetyltransferase compare
DDA3937_RS06625 +1.3 8.3 molybdenum-dependent transcriptional regulator compare
DDA3937_RS22035 +1.3 2.7 immunity protein RhsIC compare
DDA3937_RS04540 +1.3 10.4 fumarate hydratase compare
DDA3937_RS10855 +1.3 2.0 hypothetical protein compare
DDA3937_RS07175 +1.3 2.2 LysR family transcriptional regulator compare
DDA3937_RS00100 +1.3 5.9 thiol:disulfide interchange protein DsbA compare
DDA3937_RS03485 +1.3 1.4 hypothetical protein compare
DDA3937_RS12235 +1.3 7.1 two-component system sensor histidine kinase RstB compare
DDA3937_RS03080 +1.3 9.1 tRNA pseudouridine(55) synthase TruB compare
DDA3937_RS15470 +1.3 1.4 cytoskeleton protein RodZ compare
DDA3937_RS12575 +1.2 1.2 pyridoxamine 5'-phosphate oxidase compare
DDA3937_RS08965 +1.2 1.2 protease inhibitor I42 family protein compare
DDA3937_RS17180 +1.2 4.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DDA3937_RS19895 +1.2 4.7 DUF484 domain-containing protein compare
DDA3937_RS01140 +1.2 2.5 heavy metal response regulator transcription factor compare
DDA3937_RS23250 +1.2 4.7 endolytic transglycosylase MltG compare
DDA3937_RS04215 +1.2 1.7 phage tail protein compare
DDA3937_RS01550 +1.2 3.3 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DDA3937_RS17135 +1.2 1.9 glycerol-3-phosphate 1-O-acyltransferase PlsY compare
DDA3937_RS08775 +1.2 3.7 DNA-binding protein YbiB compare
DDA3937_RS09380 +1.2 5.8 outer membrane permeability protein SanA compare
DDA3937_RS18685 +1.2 4.9 WbeA compare
DDA3937_RS06375 +1.2 1.6 potassium-transporting ATPase subunit KdpC compare
DDA3937_RS08585 +1.2 1.8 molybdopterin synthase catalytic subunit MoaE compare
DDA3937_RS13070 +1.2 3.4 purine nucleoside phosphoramidase compare
DDA3937_RS20825 +1.1 8.4 ABC transporter permease compare
DDA3937_RS16050 +1.1 1.5 ribonuclease HI compare
DDA3937_RS06450 +1.1 9.2 succinate dehydrogenase flavoprotein subunit compare
DDA3937_RS10130 +1.1 4.4 MurR/RpiR family transcriptional regulator compare
DDA3937_RS06100 +1.1 0.9 M15 family metallopeptidase compare
DDA3937_RS16860 +1.1 3.1 Rcs stress response system protein RcsF compare
DDA3937_RS12600 +1.1 2.9 lactoylglutathione lyase compare
DDA3937_RS14170 +1.1 6.6 formate dehydrogenase subunit beta compare
DDA3937_RS02685 +1.1 1.3 hypothetical protein compare
DDA3937_RS16110 +1.1 6.8 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DDA3937_RS14145 +1.1 5.4 formate dehydrogenase accessory protein FdhE compare
DDA3937_RS21245 +1.1 4.8 glutathione-disulfide reductase compare
DDA3937_RS09310 +1.1 2.4 oxidoreductase compare
DDA3937_RS12230 +1.1 4.6 two-component system response regulator RstA compare
DDA3937_RS07930 +1.1 1.4 TonB family protein compare
DDA3937_RS06860 +1.1 2.7 hemin-degrading factor compare
DDA3937_RS05595 +1.1 1.4 protoheme IX farnesyltransferase compare
DDA3937_RS15660 +1.1 7.1 membrane-bound lytic murein transglycosylase MltF compare
DDA3937_RS18550 +1.1 5.8 deoxyribonuclease I compare
DDA3937_RS16095 +1.1 2.4 16S ribosomal RNA compare
DDA3937_RS00345 +1.1 5.5 inorganic phosphate transporter PitA compare
DDA3937_RS08695 +1.1 4.0 DMT family transporter compare
DDA3937_RS08470 +1.1 4.9 molybdopterin-synthase adenylyltransferase MoeB compare
DDA3937_RS15495 +1.1 3.1 3-mercaptopyruvate sulfurtransferase compare
DDA3937_RS23420 +1.1 1.6 hypothetical protein compare
DDA3937_RS16195 +1.0 1.4 glutamate--cysteine ligase compare
DDA3937_RS10980 +1.0 3.4 tetratricopeptide repeat-containing protein compare
DDA3937_RS09505 +1.0 4.2 arginine ABC transporter permease ArtQ compare
DDA3937_RS14950 +1.0 3.1 hypothetical protein compare
DDA3937_RS00865 +1.0 0.9 triose-phosphate isomerase compare
DDA3937_RS18815 +1.0 2.1 flavodoxin compare
DDA3937_RS03415 +1.0 3.0 NAD-dependent epimerase/dehydratase family protein compare
DDA3937_RS13565 +1.0 3.9 flagellar transcriptional regulator FlhD compare
DDA3937_RS01590 +1.0 3.1 BolA family iron metabolism protein IbaG compare
DDA3937_RS07895 +1.0 2.7 GNAT family N-acetyltransferase compare
DDA3937_RS02035 +1.0 3.4 AlpA family transcriptional regulator compare
DDA3937_RS03430 +1.0 2.7 ABC transporter ATP-binding protein compare
DDA3937_RS06690 +1.0 4.6 uridine kinase compare
DDA3937_RS10435 +1.0 0.8 septation protein A compare
DDA3937_RS10540 +1.0 1.1 HTH-type transcriptional regulator CysB compare
DDA3937_RS06445 +1.0 6.4 succinate dehydrogenase membrane anchor subunit compare
DDA3937_RS01615 +1.0 6.5 cell division protein ZapE compare
DDA3937_RS13360 +1.0 1.9 flagellar hook-basal body complex protein FliE compare
DDA3937_RS13560 +1.0 3.9 flagellar transcriptional regulator FlhC compare
DDA3937_RS15905 +1.0 4.0 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
DDA3937_RS17150 +1.0 1.6 gamma-glutamylcyclotransferase compare
DDA3937_RS12610 +1.0 3.3 Grx4 family monothiol glutaredoxin compare
DDA3937_RS15650 +1.0 4.3 HAMP domain-containing histidine kinase compare
DDA3937_RS14715 +1.0 3.1 isochorismatase compare
DDA3937_RS07770 +1.0 3.3 RraA family protein compare
DDA3937_RS18330 +1.0 1.4 FKBP-type peptidyl-prolyl cis-trans isomerase compare
DDA3937_RS07710 +1.0 3.1 diaminobutyrate--2-oxoglutarate transaminase compare
DDA3937_RS21250 +1.0 4.6 ribonuclease Z compare
DDA3937_RS15645 +0.9 3.8 two-component system QseEF-associated lipoprotein QseG compare
DDA3937_RS04000 +0.9 3.8 TrbC/VirB2 family protein compare
DDA3937_RS09195 +0.9 1.8 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
DDA3937_RS09945 +0.9 2.1 LysR family transcriptional regulator compare
DDA3937_RS14465 +0.9 1.6 tRNA pseudouridine(38-40) synthase TruA compare
DDA3937_RS18300 +0.9 2.4 LysE family translocator compare
DDA3937_RS16650 +0.9 1.3 amino acid ABC transporter permease compare
DDA3937_RS19715 +0.9 2.9 thiosulfate sulfurtransferase GlpE compare
DDA3937_RS15995 +0.9 4.2 ABC transporter ATP-binding protein compare
DDA3937_RS17205 +0.9 3.3 cell division protein ZapC compare
DDA3937_RS03100 +0.9 1.8 DEAD/DEAH family ATP-dependent RNA helicase compare
DDA3937_RS17080 +0.9 2.6 FlxA-like family protein compare
DDA3937_RS14165 +0.9 3.1 formate dehydrogenase cytochrome b556 subunit compare
DDA3937_RS01450 +0.9 6.7 ribonuclease G compare
DDA3937_RS05080 +0.9 1.4 YqcC family protein compare
DDA3937_RS06535 +0.9 0.9 tRNA-Lys compare
DDA3937_RS20885 +0.9 1.2 MarR family transcriptional regulator compare
DDA3937_RS18460 +0.9 5.4 energy-dependent translational throttle protein EttA compare
DDA3937_RS20245 +0.9 6.2 Xaa-Pro dipeptidase compare
DDA3937_RS18795 +0.9 1.9 nitrogen fixation protein NifQ compare
DDA3937_RS10840 +0.9 3.5 hypothetical protein compare
DDA3937_RS01915 +0.9 1.2 2-iminobutanoate/2-iminopropanoate deaminase compare
DDA3937_RS23170 +0.9 1.3 YciY family protein compare
DDA3937_RS03125 +0.9 3.0 N-acetyltransferase compare
DDA3937_RS03620 +0.9 1.2 hypothetical protein compare
DDA3937_RS08855 +0.9 1.6 biotin carboxyl carrier domain-containing protein compare
DDA3937_RS14175 +0.9 6.6 formate dehydrogenase-N subunit alpha compare
DDA3937_RS03120 +0.9 1.9 SCP2 domain-containing protein compare
DDA3937_RS14690 +0.9 2.2 MbtH family protein compare
DDA3937_RS07800 +0.9 4.0 MBL fold metallo-hydrolase compare
DDA3937_RS20085 +0.9 3.0 exopolyphosphatase compare
DDA3937_RS09520 +0.9 1.4 heavy metal-binding domain-containing protein compare
DDA3937_RS12535 +0.9 1.2 LapA family protein compare
DDA3937_RS18270 +0.9 3.2 Co2+/Mg2+ efflux protein ApaG compare
DDA3937_RS14505 +0.9 3.1 flagella biosynthesis regulator Flk compare
DDA3937_RS08075 +0.9 2.6 threo-3-hydroxy-L-aspartate ammonia-lyase compare
DDA3937_RS05405 +0.9 1.4 recombination-associated protein RdgC compare
DDA3937_RS13385 +0.9 2.7 flagella biosynthesis chaperone FliJ compare
DDA3937_RS12220 +0.8 3.5 C4-dicarboxylic acid transporter DauA compare
DDA3937_RS16595 +0.8 1.0 acyl-CoA dehydrogenase FadE compare
DDA3937_RS10310 +0.8 2.5 exodeoxyribonuclease III compare
DDA3937_RS16685 +0.8 1.0 oxalurate catabolism protein HpxZ compare
DDA3937_RS04070 +0.8 1.4 helix-turn-helix transcriptional regulator compare
DDA3937_RS04235 +0.8 2.0 phage holin family protein compare
DDA3937_RS14080 +0.8 2.1 uroporphyrinogen-III C-methyltransferase compare
DDA3937_RS15345 +0.8 1.8 transporter substrate-binding domain-containing protein compare
DDA3937_RS10410 +0.8 1.0 IS200/IS605 family transposase compare
DDA3937_RS21330 +0.8 1.8 MBL fold metallo-hydrolase compare
DDA3937_RS05645 +0.8 5.9 ATP-dependent protease ATP-binding subunit ClpX compare
DDA3937_RS13135 +0.8 2.9 phosphate acyltransferase PlsX compare
DDA3937_RS10845 +0.8 5.4 virulence factor SrfB compare
DDA3937_RS17040 +0.8 2.8 2-dehydro-3-deoxyglucarate aldolase compare
DDA3937_RS12860 +0.8 1.9 NADPH-dependent FMN reductase compare


Specific Phenotypes

For 1 genes in this experiment

For control kanamycin in Dickeya dadantii 3937

For control kanamycin across organisms