Experiment setATCH195 for Dickeya dadantii 3937

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PDB

200 most important genes:

  gene name fitness t score description  
DDA3937_RS12245 -5.4 -2.5 serine protease compare
DDA3937_RS10480 -4.6 -2.1 glutamine amidotransferase compare
DDA3937_RS03285 -3.7 -2.3 protein YgfX compare
DDA3937_RS11685 -3.6 -1.8 HrpP protein compare
DDA3937_RS19440 -3.3 -1.7 OsmC family protein compare
DDA3937_RS10210 -3.0 -2.2 GlsB/YeaQ/YmgE family stress response membrane protein compare
DDA3937_RS10675 -2.9 -1.3 ROK family transcriptional regulator compare
DDA3937_RS11970 -2.8 -4.2 RNA chaperone ProQ compare
DDA3937_RS10985 -2.8 -2.9 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS10855 -2.8 -1.9 hypothetical protein compare
DDA3937_RS14630 -2.7 -3.4 tRNA-Arg compare
DDA3937_RS00970 -2.6 -3.8 DNA-binding transcriptional regulator OxyR compare
DDA3937_RS11080 -2.6 -2.3 exodeoxyribonuclease V subunit beta compare
DDA3937_RS00025 -2.6 -18.6 low affinity potassium transporter Kup compare
DDA3937_RS00130 -2.6 -8.3 nitrogen regulation protein NR(II) compare
DDA3937_RS18330 -2.6 -2.3 FKBP-type peptidyl-prolyl cis-trans isomerase compare
DDA3937_RS10470 -2.6 -6.8 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DDA3937_RS06075 -2.6 -3.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DDA3937_RS00600 -2.6 -1.6 DcrB family lipoprotein compare
DDA3937_RS20855 -2.6 -2.5 acyl carrier protein compare
DDA3937_RS03095 -2.5 -8.9 lipoprotein NlpI compare
DDA3937_RS08400 -2.5 -1.8 H-NS histone family protein compare
DDA3937_RS15765 -2.5 -15.0 RNA polymerase sigma factor RpoE compare
DDA3937_RS00865 -2.5 -0.9 triose-phosphate isomerase compare
DDA3937_RS09075 -2.5 -1.7 hypothetical protein compare
DDA3937_RS20265 -2.4 -0.9 YeeE/YedE family protein compare
DDA3937_RS15545 -2.4 -1.5 cysteine desulfurase compare
DDA3937_RS02545 -2.4 -8.6 heavy metal translocating P-type ATPase compare
DDA3937_RS10725 -2.4 -2.0 acyltransferase family protein compare
DDA3937_RS10465 -2.4 -8.7 tryptophan synthase subunit beta compare
DDA3937_RS18600 -2.4 -1.9 FtsH protease activity modulator HflK compare
DDA3937_RS14910 -2.3 -11.0 beta-galactosidase compare
DDA3937_RS12855 -2.3 -7.5 quinone-dependent dihydroorotate dehydrogenase compare
DDA3937_RS21265 -2.3 -9.0 oligopeptidase A compare
DDA3937_RS14905 -2.3 -2.5 PTS transporter subunit EIIB compare
DDA3937_RS02865 -2.2 -6.4 transcriptional regulator UhpA compare
DDA3937_RS21965 -2.2 -1.1 helix-turn-helix domain-containing protein compare
DDA3937_RS18080 -2.2 -1.5 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DDA3937_RS11965 -2.2 -10.8 carboxy terminal-processing peptidase compare
DDA3937_RS06870 -2.2 -2.1 iron ABC transporter permease compare
DDA3937_RS10485 -2.1 -9.0 anthranilate synthase component 1 compare
DDA3937_RS07930 -2.1 -1.8 TonB family protein compare
DDA3937_RS18610 -2.1 -8.6 RNA chaperone Hfq compare
DDA3937_RS12095 -2.1 -1.8 recombinase family protein compare
DDA3937_RS09095 -2.1 -1.3 AlpA family phage regulatory protein compare
DDA3937_RS01600 -2.1 -10.3 outer membrane-stress sensor serine endopeptidase DegS compare
DDA3937_RS10460 -2.1 -6.0 tryptophan synthase subunit alpha compare
DDA3937_RS13170 -2.0 -7.9 dihydroorotase compare
DDA3937_RS01250 -2.0 -0.8 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
DDA3937_RS08280 -2.0 -2.8 RhsIA family immunity protein compare
DDA3937_RS23335 -2.0 -3.2 leu operon leader peptide compare
DDA3937_RS17545 -2.0 -4.0 aspartate/tyrosine/aromatic aminotransferase compare
DDA3937_RS04845 -1.9 -4.6 helix-turn-helix transcriptional regulator compare
DDA3937_RS17250 -1.9 -1.5 hypothetical protein compare
DDA3937_RS10580 -1.9 -2.2 transcription modulator YdgT compare
DDA3937_RS01520 -1.9 -5.6 PTS IIA-like nitrogen regulatory protein PtsN compare
DDA3937_RS02515 -1.9 -6.1 alkyl hydroperoxide reductase subunit C compare
DDA3937_RS02025 -1.9 -3.7 DUF1837 domain-containing protein compare
DDA3937_RS15060 -1.8 -1.3 imidazolonepropionase compare
DDA3937_RS10435 -1.8 -1.0 septation protein A compare
DDA3937_RS06040 -1.8 -1.4 DnaA inactivator Hda compare
DDA3937_RS13160 -1.8 -2.1 ribonuclease E compare
DDA3937_RS14775 -1.8 -1.4 type II secretion system minor pseudopilin GspI compare
DDA3937_RS14585 -1.8 -3.2 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
DDA3937_RS05150 -1.8 -3.9 sigma E protease regulator RseP compare
DDA3937_RS12885 -1.8 -11.1 aminopeptidase N compare
DDA3937_RS10740 -1.8 -3.9 ClbS/DfsB family four-helix bundle protein compare
DDA3937_RS19615 -1.8 -3.5 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS11210 -1.8 -2.6 septum site-determining protein MinD compare
DDA3937_RS20535 -1.8 -9.4 orotate phosphoribosyltransferase compare
DDA3937_RS02805 -1.8 -4.0 EnvZ/OmpR regulon moderator MzrA compare
DDA3937_RS13225 -1.7 -3.7 PepSY domain-containing protein compare
DDA3937_RS15815 -1.7 -0.9 tRNA-Val compare
DDA3937_RS12500 -1.7 -2.2 carbon starvation protein A compare
DDA3937_RS07795 -1.7 -1.6 GNAT family N-acetyltransferase compare
DDA3937_RS07960 -1.7 -5.4 DUF2076 domain-containing protein compare
DDA3937_RS17770 -1.7 -1.6 metal ABC transporter permease compare
DDA3937_RS10440 -1.7 -2.4 UPF0259 family protein compare
DDA3937_RS23425 -1.7 -1.7 hypothetical protein compare
DDA3937_RS19670 -1.7 -3.1 DeoR/GlpR family transcriptional regulator compare
DDA3937_RS19620 -1.7 -3.3 two-component system response regulator OmpR compare
DDA3937_RS09580 -1.6 -1.1 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
DDA3937_RS17160 -1.6 -7.4 outer membrane protein assembly factor compare
DDA3937_RS02815 -1.6 -1.9 transcriptional regulator ExuR compare
DDA3937_RS02660 -1.6 -4.1 RNA-directed DNA polymerase compare
DDA3937_RS18010 -1.6 -0.8 DUF721 domain-containing protein compare
DDA3937_RS05725 -1.6 -3.5 Hha toxicity modulator TomB compare
DDA3937_RS10475 -1.6 -5.4 anthranilate phosphoribosyltransferase compare
DDA3937_RS11035 -1.6 -3.1 redox-regulated ATPase YchF compare
DDA3937_RS16245 -1.6 -1.2 recombinase RecA compare
DDA3937_RS23315 -1.6 -1.9 protein MgtS compare
DDA3937_RS04180 -1.6 -2.5 ogr/Delta-like zinc finger family protein compare
DDA3937_RS21045 -1.5 -8.4 ROK family transcriptional regulator compare
DDA3937_RS01645 -1.5 -3.5 stringent starvation protein A compare
DDA3937_RS19140 -1.5 -5.9 Trk system potassium transporter TrkA compare
DDA3937_RS06355 -1.5 -6.9 alpha-D-glucose phosphate-specific phosphoglucomutase compare
DDA3937_RS13710 -1.5 -1.6 DUF2594 family protein compare
DDA3937_RS17155 -1.5 -7.0 translocation/assembly module TamB compare
DDA3937_RS06350 -1.5 -4.0 replication initiation negative regulator SeqA compare
DDA3937_RS19510 -1.5 -1.5 peptidylprolyl isomerase A compare
DDA3937_RS07410 -1.5 -2.0 4Fe-4S dicluster domain-containing protein compare
DDA3937_RS08155 -1.5 -5.2 metal ABC transporter substrate-binding protein compare
DDA3937_RS22485 -1.5 -2.5 hypothetical protein compare
DDA3937_RS03565 -1.5 -4.3 MarR family transcriptional regulator compare
DDA3937_RS10645 -1.5 -3.7 YdgA family protein compare
DDA3937_RS12970 -1.4 -3.4 hypothetical protein compare
DDA3937_RS15655 -1.4 -10.7 phosphoribosylformylglycinamidine synthase compare
DDA3937_RS22355 -1.4 -1.5 mobilization protein mobC compare
DDA3937_RS04340 -1.4 -5.3 Nramp family divalent metal transporter compare
DDA3937_RS21595 -1.4 -3.2 F0F1 ATP synthase subunit I compare
DDA3937_RS14595 -1.4 -4.3 phosphohistidine phosphatase SixA compare
DDA3937_RS07980 -1.4 -1.7 ABC transporter permease subunit compare
DDA3937_RS20315 -1.4 -1.8 Sec-independent protein translocase subunit TatA compare
DDA3937_RS12265 -1.4 -3.2 lactate utilization protein C compare
DDA3937_RS13215 -1.4 -2.9 glucans biosynthesis glucosyltransferase MdoH compare
DDA3937_RS06480 -1.4 -1.4 cytochrome ubiquinol oxidase subunit I compare
DDA3937_RS15755 -1.4 -4.8 sigma-E factor regulatory protein RseB compare
DDA3937_RS09370 -1.4 -0.9 GTP cyclohydrolase I FolE compare
DDA3937_RS09550 -1.4 -1.9 cold shock-like protein CspD compare
DDA3937_RS09775 -1.4 -0.9 [citrate (pro-3S)-lyase] ligase compare
DDA3937_RS04855 -1.4 -1.4 hypothetical protein compare
DDA3937_RS21260 -1.3 -2.2 DUF2623 domain-containing protein compare
DDA3937_RS06025 -1.3 -4.6 phosphoribosylformylglycinamidine cyclo-ligase compare
DDA3937_RS01915 -1.3 -1.2 2-iminobutanoate/2-iminopropanoate deaminase compare
DDA3937_RS09120 -1.3 -0.9 YejL family protein compare
DDA3937_RS21375 -1.3 -2.3 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
DDA3937_RS06900 -1.3 -1.6 hypothetical protein compare
DDA3937_RS20260 -1.3 -2.3 membrane protein compare
DDA3937_RS05050 -1.3 -2.8 transcriptional regulator GcvA compare
DDA3937_RS15210 -1.3 -2.4 DUF2057 family protein compare
DDA3937_RS10100 -1.3 -4.6 zinc ABC transporter substrate-binding protein ZnuA compare
DDA3937_RS02265 -1.3 -1.4 AAA family ATPase compare
DDA3937_RS13820 -1.3 -1.8 TraR/DksA family transcriptional regulator compare
DDA3937_RS17015 -1.3 -9.8 GTP diphosphokinase compare
DDA3937_RS14440 -1.3 -5.3 colicin V production protein compare
DDA3937_RS18755 -1.3 -1.5 organic hydroperoxide resistance protein compare
DDA3937_RS17310 -1.3 -3.5 YggT family protein compare
DDA3937_RS07600 -1.3 -3.9 phosphonate C-P lyase system protein PhnG compare
DDA3937_RS10515 -1.3 -4.9 protease SohB compare
DDA3937_RS13060 -1.2 -1.8 penicillin-binding protein activator LpoB compare
DDA3937_RS13990 -1.2 -2.1 TIGR04141 family sporadically distributed protein compare
DDA3937_RS14360 -1.2 -1.7 sugar phosphatase compare
DDA3937_RS06295 -1.2 -7.0 asparagine synthase B compare
DDA3937_RS05245 -1.2 -2.4 MarR family transcriptional regulator compare
DDA3937_RS19135 -1.2 -5.2 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB compare
DDA3937_RS06070 -1.2 -3.9 outer membrane protein assembly factor BamC compare
DDA3937_RS04635 -1.2 -6.1 multidrug efflux MFS transporter compare
DDA3937_RS11445 -1.2 -4.1 DNA-binding transcriptional regulator KdgR compare
DDA3937_RS17255 -1.2 -2.0 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
DDA3937_RS02445 -1.2 -1.5 peptide chain release factor 3 compare
DDA3937_RS07230 -1.2 -3.5 CidA/LrgA family protein compare
DDA3937_RS15325 -1.2 -5.7 LacI family DNA-binding transcriptional regulator compare
DDA3937_RS13930 -1.2 -2.3 transposase compare
DDA3937_RS14435 -1.2 -8.1 amidophosphoribosyltransferase compare
DDA3937_RS16665 -1.2 -5.1 MurR/RpiR family transcriptional regulator compare
DDA3937_RS03455 -1.2 -3.5 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
DDA3937_RS22535 -1.2 -6.2 DMT family transporter compare
DDA3937_RS00645 -1.2 -3.7 cell division protein FtsX compare
DDA3937_RS14370 -1.2 -3.0 DUF412 domain-containing protein compare
DDA3937_RS09310 -1.2 -2.1 oxidoreductase compare
DDA3937_RS11260 -1.1 -2.1 CoA pyrophosphatase compare
DDA3937_RS23430 -1.1 -2.7 hypothetical protein compare
DDA3937_RS12525 -1.1 -3.2 orotidine-5'-phosphate decarboxylase compare
DDA3937_RS18090 -1.1 -2.6 L-alanine exporter AlaE compare
DDA3937_RS16145 -1.1 -4.5 DUF2799 domain-containing protein compare
DDA3937_RS15150 -1.1 -4.7 polyphosphate kinase 1 compare
DDA3937_RS20345 -1.1 -2.4 acetylglutamate kinase compare
DDA3937_RS15345 -1.1 -2.4 transporter substrate-binding domain-containing protein compare
DDA3937_RS14915 -1.1 -2.7 glycosyl hydrolase 53 family protein compare
DDA3937_RS04725 -1.1 -3.1 efflux RND transporter periplasmic adaptor subunit compare
DDA3937_RS19015 -1.1 -4.8 glucose-6-phosphate isomerase compare
DDA3937_RS11505 -1.1 -5.7 two-component system sensor histidine kinase PhoQ compare
DDA3937_RS06795 -1.1 -1.7 UTP--glucose-1-phosphate uridylyltransferase compare
DDA3937_RS06360 -1.1 -1.4 EamA family transporter compare
DDA3937_RS11860 -1.1 -2.3 oxidoreductase compare
DDA3937_RS10430 -1.1 -1.1 acyl-CoA thioester hydrolase YciA compare
DDA3937_RS15420 -1.1 -3.6 IMP dehydrogenase compare
DDA3937_RS15585 -1.1 -2.6 nickel/cobalt transporter compare
DDA3937_RS20340 -1.1 -3.9 argininosuccinate lyase compare
DDA3937_RS19395 -1.1 -2.5 peptidylprolyl isomerase compare
DDA3937_RS04815 -1.1 -1.6 alpha/beta hydrolase compare
DDA3937_RS01755 -1.1 -5.6 3',5'-cyclic-AMP phosphodiesterase compare
DDA3937_RS04315 -1.1 -2.1 RnfH family protein compare
DDA3937_RS00945 -1.1 -1.8 met regulon transcriptional regulator MetJ compare
DDA3937_RS12800 -1.1 -1.9 AI-2E family transporter YdiK compare
DDA3937_RS18955 -1.1 -4.5 miniconductance mechanosensitive channel MscM compare
DDA3937_RS11205 -1.0 -2.8 septum site-determining protein MinC compare
DDA3937_RS10315 -1.0 -1.6 trimeric intracellular cation channel family protein compare
DDA3937_RS07310 -1.0 -5.6 efflux RND transporter periplasmic adaptor subunit compare
DDA3937_RS09460 -1.0 -5.1 spermidine/putrescine ABC transporter substrate-binding protein PotF compare
DDA3937_RS14610 -1.0 -1.5 YfcZ/YiiS family protein compare
DDA3937_RS07335 -1.0 -1.8 DUF1971 domain-containing protein compare
DDA3937_RS17340 -1.0 -3.5 lysophospholipid transporter LplT compare
DDA3937_RS09520 -1.0 -1.5 heavy metal-binding domain-containing protein compare
DDA3937_RS18535 -1.0 -4.4 biosynthetic arginine decarboxylase compare
DDA3937_RS15785 -1.0 -1.7 autonomous glycyl radical cofactor GrcA compare
DDA3937_RS08290 -1.0 -1.9 VOC family protein compare
DDA3937_RS17395 -1.0 -2.0 FCD domain-containing protein compare
DDA3937_RS17865 -1.0 -2.0 YhcH/YjgK/YiaL family protein compare
DDA3937_RS03920 -1.0 -3.8 DNA phosphorothioation-dependent restriction protein DptF compare


Specific Phenotypes

For 6 genes in this experiment

For control kanamycin in Dickeya dadantii 3937

For control kanamycin across organisms