Experiment setATCH195 for Dickeya dadantii 3937
PDB
Group: controlMedia: Potato Dextrose Broth + kanamycin (50 ug/ml)
Culturing: Dda3937, 24 well plate
By: Tyler Helmann on 1/26/21
Specific Phenotypes
For 6 genes in this experiment
For control kanamycin in Dickeya dadantii 3937
For control kanamycin across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria | 1 |
| Multidrug Resistance Efflux Pumps | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Phenylalanine, tyrosine and tryptophan biosynthesis
- Biosynthesis of phenylpropanoids
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of plant hormones
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-tryptophan biosynthesis | 6 | 6 | 1 |
| superpathway of L-tryptophan biosynthesis | 13 | 13 | 1 |
| superpathway of aromatic amino acid biosynthesis | 18 | 18 | 1 |
| superpathway of chorismate metabolism | 59 | 54 | 1 |