Experiment setATCH194 for Dickeya dadantii 3937

Compare to:

PDB

200 most important genes:

  gene name fitness t score description  
DDA3937_RS09575 -3.1 -0.9 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
DDA3937_RS05670 -3.1 -3.0 7-cyano-7-deazaguanine synthase QueC compare
DDA3937_RS06795 -2.7 -3.4 UTP--glucose-1-phosphate uridylyltransferase compare
DDA3937_RS13060 -2.7 -2.6 penicillin-binding protein activator LpoB compare
DDA3937_RS10465 -2.7 -8.6 tryptophan synthase subunit beta compare
DDA3937_RS01645 -2.7 -5.1 stringent starvation protein A compare
DDA3937_RS23340 -2.6 -1.7 ilvB operon leader peptide IvbL compare
DDA3937_RS08965 -2.6 -1.6 protease inhibitor I42 family protein compare
DDA3937_RS06100 -2.6 -1.8 M15 family metallopeptidase compare
DDA3937_RS15765 -2.6 -16.1 RNA polymerase sigma factor RpoE compare
DDA3937_RS00900 -2.5 -6.2 cell division protein ZapB compare
DDA3937_RS20420 -2.5 -8.0 murein hydrolase activator EnvC compare
DDA3937_RS10985 -2.5 -2.7 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS03285 -2.5 -2.0 protein YgfX compare
DDA3937_RS18890 -2.5 -1.7 hypothetical protein compare
DDA3937_RS10485 -2.5 -11.3 anthranilate synthase component 1 compare
DDA3937_RS19605 -2.5 -4.2 Hsp33 family molecular chaperone HslO compare
DDA3937_RS03620 -2.4 -2.4 hypothetical protein compare
DDA3937_RS00130 -2.4 -8.9 nitrogen regulation protein NR(II) compare
DDA3937_RS00025 -2.4 -16.0 low affinity potassium transporter Kup compare
DDA3937_RS00970 -2.4 -3.3 DNA-binding transcriptional regulator OxyR compare
DDA3937_RS05150 -2.4 -5.5 sigma E protease regulator RseP compare
DDA3937_RS22485 -2.4 -3.3 hypothetical protein compare
DDA3937_RS11965 -2.4 -10.5 carboxy terminal-processing peptidase compare
DDA3937_RS19615 -2.4 -4.2 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS06770 -2.3 -1.7 oligosaccharide flippase family protein compare
DDA3937_RS12680 -2.3 -2.1 type II secretion system protein compare
DDA3937_RS00600 -2.3 -1.7 DcrB family lipoprotein compare
DDA3937_RS03095 -2.3 -8.8 lipoprotein NlpI compare
DDA3937_RS02545 -2.3 -7.1 heavy metal translocating P-type ATPase compare
DDA3937_RS20675 -2.3 -2.7 hypothetical protein compare
DDA3937_RS10480 -2.2 -1.9 glutamine amidotransferase compare
DDA3937_RS16245 -2.2 -1.6 recombinase RecA compare
DDA3937_RS11970 -2.2 -4.1 RNA chaperone ProQ compare
DDA3937_RS00645 -2.2 -6.5 cell division protein FtsX compare
DDA3937_RS08885 -2.1 -3.0 hypothetical protein compare
DDA3937_RS21265 -2.1 -8.5 oligopeptidase A compare
DDA3937_RS17250 -2.1 -1.8 hypothetical protein compare
DDA3937_RS19670 -2.1 -3.1 DeoR/GlpR family transcriptional regulator compare
DDA3937_RS10470 -2.1 -7.3 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DDA3937_RS01600 -2.0 -9.7 outer membrane-stress sensor serine endopeptidase DegS compare
DDA3937_RS22560 -2.0 -1.7 membrane protein insertion efficiency factor YidD compare
DDA3937_RS04960 -2.0 -2.1 thymidylate synthase compare
DDA3937_RS10460 -1.9 -7.0 tryptophan synthase subunit alpha compare
DDA3937_RS04830 -1.9 -2.9 hypothetical protein compare
DDA3937_RS02410 -1.9 -2.3 5-formyltetrahydrofolate cyclo-ligase compare
DDA3937_RS21595 -1.9 -3.4 F0F1 ATP synthase subunit I compare
DDA3937_RS23115 -1.9 -2.8 hypothetical protein compare
DDA3937_RS10475 -1.9 -5.6 anthranilate phosphoribosyltransferase compare
DDA3937_RS14630 -1.8 -2.8 tRNA-Arg compare
DDA3937_RS19510 -1.8 -2.5 peptidylprolyl isomerase A compare
DDA3937_RS00630 -1.8 -2.2 16S rRNA (guanine(966)-N(2))-methyltransferase compare
DDA3937_RS01000 -1.8 -2.1 glutamate racemase compare
DDA3937_RS09120 -1.8 -1.1 YejL family protein compare
DDA3937_RS02280 -1.8 -2.3 chorismate mutase compare
DDA3937_RS12855 -1.8 -5.0 quinone-dependent dihydroorotate dehydrogenase compare
DDA3937_RS03565 -1.8 -3.7 MarR family transcriptional regulator compare
DDA3937_RS01520 -1.8 -5.2 PTS IIA-like nitrogen regulatory protein PtsN compare
DDA3937_RS11715 -1.8 -3.3 hypothetical protein compare
DDA3937_RS02965 -1.7 -1.5 transcriptional regulator ArgR compare
DDA3937_RS15420 -1.7 -3.9 IMP dehydrogenase compare
DDA3937_RS18005 -1.7 -1.5 secA regulator SecM compare
DDA3937_RS13170 -1.7 -6.1 dihydroorotase compare
DDA3937_RS18610 -1.7 -6.3 RNA chaperone Hfq compare
DDA3937_RS21045 -1.7 -9.3 ROK family transcriptional regulator compare
DDA3937_RS14910 -1.7 -7.2 beta-galactosidase compare
DDA3937_RS17830 -1.7 -0.9 DeoR/GlpR transcriptional regulator compare
DDA3937_RS01650 -1.7 -4.0 ClpXP protease specificity-enhancing factor compare
DDA3937_RS23020 -1.6 -0.8 hypothetical protein compare
DDA3937_RS01740 -1.6 -3.4 outer membrane channel protein TolC compare
DDA3937_RS12885 -1.6 -9.8 aminopeptidase N compare
DDA3937_RS17310 -1.6 -5.2 YggT family protein compare
DDA3937_RS17155 -1.6 -6.6 translocation/assembly module TamB compare
DDA3937_RS20535 -1.6 -7.4 orotate phosphoribosyltransferase compare
DDA3937_RS19395 -1.5 -3.2 peptidylprolyl isomerase compare
DDA3937_RS11445 -1.5 -5.5 DNA-binding transcriptional regulator KdgR compare
DDA3937_RS10440 -1.5 -2.0 UPF0259 family protein compare
DDA3937_RS06070 -1.5 -3.9 outer membrane protein assembly factor BamC compare
DDA3937_RS06295 -1.5 -8.8 asparagine synthase B compare
DDA3937_RS05615 -1.5 -1.4 cytochrome o ubiquinol oxidase subunit II compare
DDA3937_RS01215 -1.5 -6.2 phosphoribosylamine--glycine ligase compare
DDA3937_RS13165 -1.5 -2.4 antibiotic biosynthesis monooxygenase compare
DDA3937_RS00135 -1.5 -1.3 glutamate--ammonia ligase compare
DDA3937_RS06075 -1.5 -2.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DDA3937_RS12850 -1.5 -1.6 cell division protein ZapC compare
DDA3937_RS11750 -1.5 -2.9 transporter substrate-binding domain-containing protein compare
DDA3937_RS14440 -1.5 -6.7 colicin V production protein compare
DDA3937_RS19640 -1.4 -3.0 hypothetical protein compare
DDA3937_RS15655 -1.4 -10.0 phosphoribosylformylglycinamidine synthase compare
DDA3937_RS10370 -1.4 -2.1 YchE family NAAT transporter compare
DDA3937_RS18195 -1.4 -2.3 hypothetical protein compare
DDA3937_RS19930 -1.4 -3.1 uroporphyrinogen-III C-methyltransferase compare
DDA3937_RS13495 -1.4 -2.1 flagellar export chaperone FlgN compare
DDA3937_RS10125 -1.4 -2.3 pyruvate kinase compare
DDA3937_RS12525 -1.4 -3.6 orotidine-5'-phosphate decarboxylase compare
DDA3937_RS11290 -1.4 -2.7 PTS mannose transporter subunit IID compare
DDA3937_RS12800 -1.4 -2.5 AI-2E family transporter YdiK compare
DDA3937_RS10675 -1.4 -1.0 ROK family transcriptional regulator compare
DDA3937_RS16665 -1.4 -4.8 MurR/RpiR family transcriptional regulator compare
DDA3937_RS14945 -1.4 -1.5 hypothetical protein compare
DDA3937_RS09580 -1.4 -1.0 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
DDA3937_RS01140 -1.4 -2.2 heavy metal response regulator transcription factor compare
DDA3937_RS16540 -1.4 -1.8 sigma factor-binding protein Crl compare
DDA3937_RS00980 -1.3 -6.3 HTH-type transcriptional repressor FabR compare
DDA3937_RS04490 -1.3 -2.0 cysteine synthase A compare
DDA3937_RS17015 -1.3 -9.8 GTP diphosphokinase compare
DDA3937_RS02915 -1.3 -2.3 TetR/AcrR family transcriptional regulator compare
DDA3937_RS05660 -1.3 -6.2 peptidylprolyl isomerase compare
DDA3937_RS18330 -1.3 -1.0 FKBP-type peptidyl-prolyl cis-trans isomerase compare
DDA3937_RS17160 -1.3 -5.5 outer membrane protein assembly factor compare
DDA3937_RS12500 -1.3 -1.8 carbon starvation protein A compare
DDA3937_RS12010 -1.3 -1.4 hypothetical protein compare
DDA3937_RS13920 -1.3 -0.9 CcdB family protein compare
DDA3937_RS11505 -1.3 -6.9 two-component system sensor histidine kinase PhoQ compare
DDA3937_RS07960 -1.3 -4.6 DUF2076 domain-containing protein compare
DDA3937_RS09170 -1.3 -2.3 hypothetical protein compare
DDA3937_RS14845 -1.3 -2.0 tail fiber assembly protein compare
DDA3937_RS11855 -1.3 -5.3 methionine synthase compare
DDA3937_RS08130 -1.3 -1.5 malonate decarboxylase subunit epsilon compare
DDA3937_RS04125 -1.3 -3.3 acetyltransferase compare
DDA3937_RS02885 -1.3 -4.9 ATP-independent periplasmic protein-refolding chaperone compare
DDA3937_RS23450 -1.3 -2.3 CPBP family intramembrane metalloprotease compare
DDA3937_RS23075 -1.3 -2.0 hypothetical protein compare
DDA3937_RS08895 -1.3 -5.1 ABC transporter ATP-binding protein compare
DDA3937_RS14435 -1.3 -9.2 amidophosphoribosyltransferase compare
DDA3937_RS00785 -1.3 -1.3 cell-envelope stress modulator CpxP compare
DDA3937_RS04680 -1.3 -1.4 TIGR00645 family protein compare
DDA3937_RS11035 -1.2 -2.4 redox-regulated ATPase YchF compare
DDA3937_RS08375 -1.2 -3.2 radical SAM protein compare
DDA3937_RS06870 -1.2 -1.3 iron ABC transporter permease compare
DDA3937_RS03545 -1.2 -2.0 helix-turn-helix transcriptional regulator compare
DDA3937_RS02515 -1.2 -4.6 alkyl hydroperoxide reductase subunit C compare
DDA3937_RS02755 -1.2 -2.2 diacylglycerol kinase compare
DDA3937_RS17425 -1.2 -6.1 diaminopimelate decarboxylase compare
DDA3937_RS18535 -1.2 -4.7 biosynthetic arginine decarboxylase compare
DDA3937_RS19015 -1.2 -4.9 glucose-6-phosphate isomerase compare
DDA3937_RS06025 -1.2 -4.3 phosphoribosylformylglycinamidine cyclo-ligase compare
DDA3937_RS14750 -1.2 -1.6 prepilin peptidase compare
DDA3937_RS23345 -1.2 -1.8 hypothetical protein compare
DDA3937_RS15150 -1.2 -5.0 polyphosphate kinase 1 compare
DDA3937_RS00125 -1.2 -1.6 nitrogen regulation protein NR(I) compare
DDA3937_RS09825 -1.2 -2.7 DUF496 family protein compare
DDA3937_RS09520 -1.2 -1.3 heavy metal-binding domain-containing protein compare
DDA3937_RS18560 -1.2 -2.6 glutathione synthase compare
DDA3937_RS00945 -1.1 -2.1 met regulon transcriptional regulator MetJ compare
DDA3937_RS08145 -1.1 -1.6 metal ABC transporter permease compare
DDA3937_RS02290 -1.1 -1.6 HD domain-containing protein compare
DDA3937_RS16475 -1.1 -2.6 hypothetical protein compare
DDA3937_RS03420 -1.1 -2.0 sugar transferase compare
DDA3937_RS04340 -1.1 -4.1 Nramp family divalent metal transporter compare
DDA3937_RS21095 -1.1 -0.7 DUF1471 domain-containing protein compare
DDA3937_RS19620 -1.1 -2.0 two-component system response regulator OmpR compare
DDA3937_RS15915 -1.1 -1.6 bifunctional glycosyl transferase/transpeptidase compare
DDA3937_RS04430 -1.1 -2.5 Hcp family type VI secretion system effector compare
DDA3937_RS15225 -1.1 -2.1 YccF domain-containing protein compare
DDA3937_RS02025 -1.1 -2.5 DUF1837 domain-containing protein compare
DDA3937_RS04815 -1.1 -2.5 alpha/beta hydrolase compare
DDA3937_RS10725 -1.1 -1.6 acyltransferase family protein compare
DDA3937_RS18955 -1.1 -4.8 miniconductance mechanosensitive channel MscM compare
DDA3937_RS17485 -1.1 -1.2 envelope stress response protein PspG compare
DDA3937_RS23315 -1.1 -1.3 protein MgtS compare
DDA3937_RS20725 -1.1 -2.8 acyl-homoserine-lactone synthase compare
DDA3937_RS17995 -1.1 -1.7 8-oxo-dGTP diphosphatase MutT compare
DDA3937_RS08975 -1.1 -3.7 DUF1304 domain-containing protein compare
DDA3937_RS14860 -1.1 -3.7 PTS cellobiose transporter subunit IIB compare
DDA3937_RS22270 -1.0 -1.1 type I addiction module toxin, SymE family compare
DDA3937_RS09815 -1.0 -5.3 APC family permease compare
DDA3937_RS23320 -1.0 -2.1 hypothetical protein compare
DDA3937_RS01770 -1.0 -3.6 LysR family transcriptional regulator compare
DDA3937_RS09720 -1.0 -3.6 imidazole glycerol phosphate synthase subunit HisH compare
DDA3937_RS07955 -1.0 -1.8 LysR family transcriptional regulator compare
DDA3937_RS00625 -1.0 -2.1 DUF1145 family protein compare
DDA3937_RS11055 -1.0 -2.9 sigma-70 family RNA polymerase sigma factor compare
DDA3937_RS17545 -1.0 -2.0 aspartate/tyrosine/aromatic aminotransferase compare
DDA3937_RS02265 -1.0 -1.1 AAA family ATPase compare
DDA3937_RS20265 -1.0 -0.5 YeeE/YedE family protein compare
DDA3937_RS12585 -1.0 -2.5 anhydro-N-acetylmuramic acid kinase compare
DDA3937_RS10775 -1.0 -3.9 TetR/AcrR family transcriptional regulator compare
DDA3937_RS21350 -1.0 -3.9 GNAT family N-acetyltransferase compare
DDA3937_RS22240 -1.0 -1.7 type II toxin-antitoxin system RelE/ParE family toxin compare
DDA3937_RS06355 -1.0 -4.5 alpha-D-glucose phosphate-specific phosphoglucomutase compare
DDA3937_RS15990 -1.0 -2.6 GNAT family N-acetyltransferase compare
DDA3937_RS09345 -1.0 -0.7 IS200/IS605 family transposase compare
DDA3937_RS04805 -1.0 -2.7 HlyD family efflux transporter periplasmic adaptor subunit compare
DDA3937_RS03965 -1.0 -2.2 helix-turn-helix transcriptional regulator compare
DDA3937_RS02510 -1.0 -1.3 iron ABC transporter permease compare
DDA3937_RS10340 -1.0 -5.2 two-component system response regulator RssB compare
DDA3937_RS11645 -1.0 -3.3 response regulator transcription factor compare
DDA3937_RS09940 -1.0 -3.1 DeoR/GlpR transcriptional regulator compare
DDA3937_RS13930 -0.9 -1.8 transposase compare
DDA3937_RS20260 -0.9 -1.7 membrane protein compare
DDA3937_RS23265 -0.9 -4.3 hypothetical protein compare
DDA3937_RS11770 -0.9 -1.0 amino acid ABC transporter ATP-binding protein compare
DDA3937_RS20975 -0.9 -4.4 mannitol-1-phosphate 5-dehydrogenase compare
DDA3937_RS13630 -0.9 -1.2 hypothetical protein compare
DDA3937_RS23465 -0.9 -1.4 hypothetical protein compare
DDA3937_RS04180 -0.9 -1.5 ogr/Delta-like zinc finger family protein compare
DDA3937_RS14595 -0.9 -2.8 phosphohistidine phosphatase SixA compare
DDA3937_RS07175 -0.9 -1.1 LysR family transcriptional regulator compare
DDA3937_RS00170 -0.9 -4.0 ATP-dependent DNA helicase RecG compare


Specific Phenotypes

For 6 genes in this experiment

For control kanamycin in Dickeya dadantii 3937

For control kanamycin across organisms