Experiment setATCH194 for Dickeya dadantii 3937

PDB

Group: control
Media: Potato Dextrose Broth + kanamycin (50 ug/ml)
Culturing: Dda3937, 24 well plate
By: Tyler Helmann on 1/26/21

Specific Phenotypes

For 6 genes in this experiment

For control kanamycin in Dickeya dadantii 3937

For control kanamycin across organisms

SEED Subsystems

Subsystem	#Specific
ABC transporter dipeptide (TC 3.A.1.5.2)	1
Bacterial Chemotaxis	1
Methionine Biosynthesis	1
NAD and NADP cofactor biosynthesis global	1
NAD regulation	1
PnuC-like transporters	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Nicotinate and nicotinamide metabolism
• Methionine metabolism
• Biosynthesis of plant hormones

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
NAD salvage pathway IV (from nicotinamide riboside)	2	2	2
NAD biosynthesis from nicotinamide	2	1	1
S-adenosyl-L-methionine salvage II	3	2	1
S-adenosyl-L-methionine salvage I	4	4	1
L-methionine biosynthesis III	4	3	1
L-methionine biosynthesis I	5	5	1
seleno-amino acid biosynthesis (plants)	5	3	1
L-methionine biosynthesis II	6	5	1
lipoprotein posttranslational modification (Gram-negative bacteria)	7	6	1
superpathway of NAD biosynthesis in eukaryotes	14	7	2
superpathway of L-homoserine and L-methionine biosynthesis	8	8	1
superpathway of S-adenosyl-L-methionine biosynthesis	9	9	1
superpathway of L-methionine biosynthesis (transsulfuration)	9	9	1
superpathway of L-methionine biosynthesis (by sulfhydrylation)	12	11	1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis II	15	13	1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis I	18	18	1
superpathway of seleno-compound metabolism	19	6	1
aspartate superpathway	25	24	1