Experiment setATCH192 for Dickeya dadantii 3937

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
DDA3937_RS09575 -3.6 -2.1 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
DDA3937_RS00640 -2.4 -3.9 cell division ATP-binding protein FtsE compare
DDA3937_RS04960 -2.3 -3.6 thymidylate synthase compare
DDA3937_RS00125 -1.8 -3.0 nitrogen regulation protein NR(I) compare
DDA3937_RS09095 -1.8 -2.2 AlpA family phage regulatory protein compare
DDA3937_RS17830 -1.7 -2.1 DeoR/GlpR transcriptional regulator compare
DDA3937_RS13060 -1.7 -3.5 penicillin-binding protein activator LpoB compare
DDA3937_RS04420 -1.6 -6.4 Dyp-type peroxidase compare
DDA3937_RS10985 -1.6 -2.9 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS16245 -1.6 -3.3 recombinase RecA compare
DDA3937_RS02685 -1.6 -2.4 hypothetical protein compare
DDA3937_RS11210 -1.6 -4.7 septum site-determining protein MinD compare
DDA3937_RS13135 -1.6 -6.4 phosphate acyltransferase PlsX compare
DDA3937_RS20455 -1.6 -3.4 putative lipopolysaccharide heptosyltransferase III compare
DDA3937_RS11965 -1.5 -10.4 carboxy terminal-processing peptidase compare
DDA3937_RS12900 -1.5 -13.0 porin compare
DDA3937_RS19615 -1.5 -2.1 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS17155 -1.5 -8.5 translocation/assembly module TamB compare
DDA3937_RS17160 -1.5 -7.4 outer membrane protein assembly factor compare
DDA3937_RS05645 -1.4 -10.0 ATP-dependent protease ATP-binding subunit ClpX compare
DDA3937_RS14905 -1.4 -2.3 PTS transporter subunit EIIB compare
DDA3937_RS04125 -1.4 -4.1 acetyltransferase compare
DDA3937_RS03300 -1.4 -1.3 site-specific tyrosine recombinase XerD compare
DDA3937_RS05640 -1.4 -7.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
DDA3937_RS21310 -1.3 -3.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DDA3937_RS15720 -1.3 -5.1 pyridoxine 5'-phosphate synthase compare
DDA3937_RS06040 -1.2 -1.9 DnaA inactivator Hda compare
DDA3937_RS11460 -1.2 -3.9 protease HtpX compare
DDA3937_RS18610 -1.2 -6.4 RNA chaperone Hfq compare
DDA3937_RS17150 -1.2 -2.6 gamma-glutamylcyclotransferase compare
DDA3937_RS21675 -1.2 -2.8 DUF4225 domain-containing protein compare
DDA3937_RS14630 -1.2 -3.5 tRNA-Arg compare
DDA3937_RS00645 -1.2 -4.8 cell division protein FtsX compare
DDA3937_RS00900 -1.2 -3.7 cell division protein ZapB compare
DDA3937_RS09345 -1.1 -1.8 IS200/IS605 family transposase compare
DDA3937_RS04945 -1.1 -5.5 RNA pyrophosphohydrolase compare
DDA3937_RS19620 -1.1 -2.3 two-component system response regulator OmpR compare
DDA3937_RS17545 -1.1 -4.0 aspartate/tyrosine/aromatic aminotransferase compare
DDA3937_RS14775 -1.1 -2.2 type II secretion system minor pseudopilin GspI compare
DDA3937_RS11445 -1.1 -4.9 DNA-binding transcriptional regulator KdgR compare
DDA3937_RS04430 -1.1 -2.6 Hcp family type VI secretion system effector compare
DDA3937_RS20470 -1.1 -6.9 glycosyltransferase family 9 protein compare
DDA3937_RS09115 -1.1 -4.3 DUF3413 domain-containing protein compare
DDA3937_RS13215 -1.0 -3.5 glucans biosynthesis glucosyltransferase MdoH compare
DDA3937_RS05160 -1.0 -1.2 molecular chaperone Skp compare
DDA3937_RS11205 -1.0 -5.0 septum site-determining protein MinC compare
DDA3937_RS13220 -1.0 -2.8 glucan biosynthesis protein G compare
DDA3937_RS12500 -1.0 -2.6 carbon starvation protein A compare
DDA3937_RS02725 -1.0 -1.9 FxsA family protein compare
DDA3937_RS14475 -1.0 -4.0 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS12010 -1.0 -2.4 hypothetical protein compare
DDA3937_RS19880 -1.0 -4.6 DNA helicase II compare
DDA3937_RS04895 -1.0 -2.6 oxidative damage protection protein compare
DDA3937_RS10675 -1.0 -2.2 ROK family transcriptional regulator compare
DDA3937_RS06350 -1.0 -3.3 replication initiation negative regulator SeqA compare
DDA3937_RS01000 -1.0 -2.3 glutamate racemase compare
DDA3937_RS00980 -1.0 -7.3 HTH-type transcriptional repressor FabR compare
DDA3937_RS03485 -1.0 -2.8 hypothetical protein compare
DDA3937_RS14465 -1.0 -2.0 tRNA pseudouridine(38-40) synthase TruA compare
DDA3937_RS13245 -1.0 -2.8 macrodomain Ter protein MatP compare
DDA3937_RS00750 -0.9 -2.8 DUF2756 domain-containing protein compare
DDA3937_RS17640 -0.9 -2.1 phage tail protein compare
DDA3937_RS01740 -0.9 -2.9 outer membrane channel protein TolC compare
DDA3937_RS00140 -0.9 -4.4 ribosome-dependent GTPase TypA compare
DDA3937_RS08565 -0.9 -2.4 GTP 3',8-cyclase MoaA compare
DDA3937_RS11035 -0.9 -2.2 redox-regulated ATPase YchF compare
DDA3937_RS17135 -0.9 -1.7 glycerol-3-phosphate 1-O-acyltransferase PlsY compare
DDA3937_RS18080 -0.9 -1.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DDA3937_RS19930 -0.9 -2.2 uroporphyrinogen-III C-methyltransferase compare
DDA3937_RS13340 -0.9 -3.6 flagellin FliC compare
DDA3937_RS18195 -0.9 -3.3 hypothetical protein compare
DDA3937_RS13335 -0.9 -1.5 IS200/IS605 family transposase compare
DDA3937_RS10405 -0.9 -3.1 cardiolipin synthase compare
DDA3937_RS03095 -0.9 -5.2 lipoprotein NlpI compare
DDA3937_RS13490 -0.9 -1.4 anti-sigma-28 factor FlgM compare
DDA3937_RS10580 -0.9 -1.5 transcription modulator YdgT compare
DDA3937_RS03420 -0.9 -2.5 sugar transferase compare
DDA3937_RS15705 -0.8 -5.3 cyclic-guanylate-specific phosphodiesterase compare
DDA3937_RS03310 -0.8 -4.9 single-stranded-DNA-specific exonuclease RecJ compare
DDA3937_RS01645 -0.8 -2.6 stringent starvation protein A compare
DDA3937_RS18670 -0.8 -2.8 ABC transporter permease compare
DDA3937_RS06990 -0.8 -3.0 RHS domain-containing protein compare
DDA3937_RS22175 -0.8 -1.2 IS3 family transposase compare
DDA3937_RS18585 -0.8 -1.3 adenylosuccinate synthase compare
DDA3937_RS22560 -0.8 -1.5 membrane protein insertion efficiency factor YidD compare
DDA3937_RS03965 -0.8 -3.7 helix-turn-helix transcriptional regulator compare
DDA3937_RS07235 -0.8 -1.9 response regulator transcription factor compare
DDA3937_RS11080 -0.8 -1.9 exodeoxyribonuclease V subunit beta compare
DDA3937_RS20235 -0.8 -3.9 Trk system potassium transporter TrkH compare
DDA3937_RS01065 -0.8 -1.2 elongation factor Tu compare
DDA3937_RS15150 -0.8 -4.4 polyphosphate kinase 1 compare
DDA3937_RS20465 -0.8 -3.3 O-antigen ligase family protein compare
DDA3937_RS13345 -0.8 -4.1 flagellar filament capping protein FliD compare
DDA3937_RS01570 -0.8 -3.6 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
DDA3937_RS13550 -0.8 -5.6 flagellar motor protein MotB compare
DDA3937_RS23190 -0.8 -1.6 hypothetical protein compare
DDA3937_RS23305 -0.8 -1.7 hypothetical protein compare
DDA3937_RS13110 -0.8 -3.2 beta-ketoacyl-ACP synthase II compare
DDA3937_RS09010 -0.8 -2.9 transposase compare
DDA3937_RS21960 -0.8 -4.3 helix-turn-helix transcriptional regulator compare
DDA3937_RS13555 -0.8 -5.1 flagellar motor stator protein MotA compare
DDA3937_RS00970 -0.8 -2.5 DNA-binding transcriptional regulator OxyR compare
DDA3937_RS16065 -0.8 -2.6 murein transglycosylase D compare
DDA3937_RS12820 -0.8 -3.6 membrane integrity-associated transporter subunit PqiC compare
DDA3937_RS12460 -0.7 -3.9 peptide ABC transporter ATP-binding protein SapF compare
DDA3937_RS19000 -0.7 -1.1 EF-P beta-lysylation protein EpmB compare
DDA3937_RS06770 -0.7 -1.6 oligosaccharide flippase family protein compare
DDA3937_RS12440 -0.7 -3.1 peptide ABC transporter substrate-binding protein SapA compare
DDA3937_RS02790 -0.7 -1.0 YqjK-like family protein compare
DDA3937_RS20885 -0.7 -1.7 MarR family transcriptional regulator compare
DDA3937_RS08645 -0.7 -4.2 ATP-dependent RNA helicase RhlE compare
DDA3937_RS12610 -0.7 -2.3 Grx4 family monothiol glutaredoxin compare
DDA3937_RS15815 -0.7 -1.2 tRNA-Val compare
DDA3937_RS17515 -0.7 -1.3 DUF1471 domain-containing protein compare
DDA3937_RS13205 -0.7 -2.9 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
DDA3937_RS04480 -0.7 -3.7 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DDA3937_RS11715 -0.7 -2.7 hypothetical protein compare
DDA3937_RS16195 -0.7 -1.3 glutamate--cysteine ligase compare
DDA3937_RS22235 -0.7 -2.5 immunity 8 family protein compare
DDA3937_RS17180 -0.7 -3.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DDA3937_RS06535 -0.7 -1.3 tRNA-Lys compare
DDA3937_RS01495 -0.7 -3.4 ribosome-associated protein compare
DDA3937_RS00775 -0.7 -1.4 envelope stress sensor histidine kinase CpxA compare
DDA3937_RS03100 -0.7 -1.6 DEAD/DEAH family ATP-dependent RNA helicase compare
DDA3937_RS00170 -0.7 -3.6 ATP-dependent DNA helicase RecG compare
DDA3937_RS02965 -0.7 -1.4 transcriptional regulator ArgR compare
DDA3937_RS03285 -0.7 -1.9 protein YgfX compare
DDA3937_RS20975 -0.7 -4.1 mannitol-1-phosphate 5-dehydrogenase compare
DDA3937_RS21965 -0.7 -1.1 helix-turn-helix domain-containing protein compare
DDA3937_RS14675 -0.7 -1.6 ABC transporter ATP-binding protein compare
DDA3937_RS12680 -0.7 -2.2 type II secretion system protein compare
DDA3937_RS10500 -0.7 -3.3 23S rRNA pseudouridine(2605) synthase RluB compare
DDA3937_RS02720 -0.7 -4.9 aspartate ammonia-lyase compare
DDA3937_RS13905 -0.7 -3.1 hypothetical protein compare
DDA3937_RS20475 -0.6 -0.9 glycosyltransferase family 4 protein compare
DDA3937_RS15450 -0.6 -2.0 outer membrane protein assembly factor BamB compare
DDA3937_RS06700 -0.6 -3.6 outer membrane assembly protein AsmA compare
DDA3937_RS01450 -0.6 -5.3 ribonuclease G compare
DDA3937_RS14340 -0.6 -2.7 transcriptional regulator LrhA compare
DDA3937_RS19140 -0.6 -3.2 Trk system potassium transporter TrkA compare
DDA3937_RS18685 -0.6 -4.1 WbeA compare
DDA3937_RS07325 -0.6 -2.1 DUF2501 domain-containing protein compare
DDA3937_RS16795 -0.6 -1.2 YfiM family lipoprotein compare
DDA3937_RS20415 -0.6 -1.5 rhodanese-like domain-containing protein compare
DDA3937_RS13430 -0.6 -3.9 flagellar hook-associated protein FlgL compare
DDA3937_RS05245 -0.6 -3.5 MarR family transcriptional regulator compare
DDA3937_RS15405 -0.6 -1.9 hypothetical protein compare
DDA3937_RS18680 -0.6 -1.7 GDP-L-fucose synthase compare
DDA3937_RS07490 -0.6 -3.5 glutamate/aspartate:proton symporter GltP compare
DDA3937_RS07355 -0.6 -3.6 hypothetical protein compare
DDA3937_RS06450 -0.6 -5.3 succinate dehydrogenase flavoprotein subunit compare
DDA3937_RS13360 -0.6 -1.3 flagellar hook-basal body complex protein FliE compare
DDA3937_RS02915 -0.6 -2.4 TetR/AcrR family transcriptional regulator compare
DDA3937_RS19670 -0.6 -2.0 DeoR/GlpR family transcriptional regulator compare
DDA3937_RS07335 -0.6 -2.0 DUF1971 domain-containing protein compare
DDA3937_RS15185 -0.6 -3.1 FtsH protease modulator YccA compare
DDA3937_RS13500 -0.6 -2.4 flagellar protein FlhE compare
DDA3937_RS08400 -0.6 -1.3 H-NS histone family protein compare
DDA3937_RS12265 -0.6 -2.2 lactate utilization protein C compare
DDA3937_RS11180 -0.6 -2.1 fatty acid metabolism transcriptional regulator FadR compare
DDA3937_RS01250 -0.6 -0.9 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
DDA3937_RS11970 -0.6 -2.0 RNA chaperone ProQ compare
DDA3937_RS09585 -0.6 -1.2 thioredoxin-disulfide reductase compare
DDA3937_RS16110 -0.6 -3.8 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DDA3937_RS09510 -0.6 -2.4 arginine ABC transporter substrate-binding protein compare
DDA3937_RS13435 -0.6 -4.6 flagellar hook-associated protein FlgK compare
DDA3937_RS06755 -0.6 -1.9 glycosyltransferase family 2 protein compare
DDA3937_RS12040 -0.6 -1.4 phage tail protein compare
DDA3937_RS04340 -0.6 -3.4 Nramp family divalent metal transporter compare
DDA3937_RS23075 -0.6 -1.7 hypothetical protein compare
DDA3937_RS12425 -0.5 -1.0 phage shock protein PspA compare
DDA3937_RS13805 -0.5 -3.0 helix-turn-helix transcriptional regulator compare
DDA3937_RS14440 -0.5 -3.8 colicin V production protein compare
DDA3937_RS13820 -0.5 -2.1 TraR/DksA family transcriptional regulator compare
DDA3937_RS10440 -0.5 -1.8 UPF0259 family protein compare
DDA3937_RS20420 -0.5 -2.5 murein hydrolase activator EnvC compare
DDA3937_RS09590 -0.5 -1.7 leucine-responsive transcriptional regulator Lrp compare
DDA3937_RS09285 -0.5 -1.8 acyl carrier protein compare
DDA3937_RS00185 -0.5 -1.7 DNA-directed RNA polymerase subunit omega compare
DDA3937_RS05150 -0.5 -2.0 sigma E protease regulator RseP compare
DDA3937_RS19605 -0.5 -1.3 Hsp33 family molecular chaperone HslO compare
DDA3937_RS19440 -0.5 -1.0 OsmC family protein compare
DDA3937_RS08145 -0.5 -1.6 metal ABC transporter permease compare
DDA3937_RS06440 -0.5 -3.9 succinate dehydrogenase cytochrome b556 subunit compare
DDA3937_RS04150 -0.5 -2.8 hypothetical protein compare
DDA3937_RS20190 -0.5 -0.9 HTH-type transcriptional regulator HdfR compare
DDA3937_RS12430 -0.5 -1.7 phage shock protein operon transcriptional activator compare
DDA3937_RS18615 -0.5 -1.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
DDA3937_RS14385 -0.5 -2.7 phosphate acetyltransferase compare
DDA3937_RS08390 -0.5 -2.8 IS110 family transposase compare
DDA3937_RS09275 -0.5 -1.8 3-oxoacyl-ACP synthase compare
DDA3937_RS00835 -0.5 -1.0 2TM domain-containing protein compare
DDA3937_RS15745 -0.5 -2.2 elongation factor 4 compare
DDA3937_RS21605 -0.5 -2.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DDA3937_RS11645 -0.5 -2.5 response regulator transcription factor compare
DDA3937_RS15915 -0.5 -1.3 bifunctional glycosyl transferase/transpeptidase compare
DDA3937_RS09195 -0.5 -1.6 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
DDA3937_RS13325 -0.5 -3.3 DegT/DnrJ/EryC1/StrS family aminotransferase compare
DDA3937_RS10410 -0.5 -1.0 IS200/IS605 family transposase compare
DDA3937_RS02395 -0.5 -0.7 Xaa-Pro aminopeptidase compare


Specific Phenotypes

None in this experiment

For Dickeya dadantii 3937 in control experiments

For control kanamycin across organisms