Experiment setATCH191 for Dickeya dadantii 3937

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
DDA3937_RS05160 -3.8 -3.6 molecular chaperone Skp compare
DDA3937_RS17830 -2.5 -2.3 DeoR/GlpR transcriptional regulator compare
DDA3937_RS11035 -2.1 -5.2 redox-regulated ATPase YchF compare
DDA3937_RS04420 -2.1 -6.2 Dyp-type peroxidase compare
DDA3937_RS17155 -2.0 -11.1 translocation/assembly module TamB compare
DDA3937_RS10985 -1.9 -2.9 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS06145 -1.6 -2.7 lipoyl(octanoyl) transferase LipB compare
DDA3937_RS17150 -1.6 -2.4 gamma-glutamylcyclotransferase compare
DDA3937_RS05640 -1.6 -7.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
DDA3937_RS12900 -1.5 -13.1 porin compare
DDA3937_RS20455 -1.5 -3.4 putative lipopolysaccharide heptosyltransferase III compare
DDA3937_RS13135 -1.5 -6.3 phosphate acyltransferase PlsX compare
DDA3937_RS11965 -1.5 -9.4 carboxy terminal-processing peptidase compare
DDA3937_RS17160 -1.5 -7.7 outer membrane protein assembly factor compare
DDA3937_RS13490 -1.5 -2.3 anti-sigma-28 factor FlgM compare
DDA3937_RS20885 -1.4 -2.4 MarR family transcriptional regulator compare
DDA3937_RS11210 -1.4 -2.8 septum site-determining protein MinD compare
DDA3937_RS18610 -1.4 -8.2 RNA chaperone Hfq compare
DDA3937_RS00640 -1.4 -1.4 cell division ATP-binding protein FtsE compare
DDA3937_RS00125 -1.3 -2.5 nitrogen regulation protein NR(I) compare
DDA3937_RS09975 -1.3 -3.1 molecular chaperone compare
DDA3937_RS22560 -1.3 -2.2 membrane protein insertion efficiency factor YidD compare
DDA3937_RS09115 -1.3 -4.9 DUF3413 domain-containing protein compare
DDA3937_RS19615 -1.3 -2.8 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS00900 -1.3 -4.4 cell division protein ZapB compare
DDA3937_RS12445 -1.3 -2.3 peptide ABC transporter permease SapB compare
DDA3937_RS04895 -1.3 -3.3 oxidative damage protection protein compare
DDA3937_RS15720 -1.3 -5.1 pyridoxine 5'-phosphate synthase compare
DDA3937_RS04125 -1.3 -4.9 acetyltransferase compare
DDA3937_RS05645 -1.3 -9.0 ATP-dependent protease ATP-binding subunit ClpX compare
DDA3937_RS11970 -1.3 -3.8 RNA chaperone ProQ compare
DDA3937_RS21310 -1.2 -2.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DDA3937_RS17545 -1.2 -3.9 aspartate/tyrosine/aromatic aminotransferase compare
DDA3937_RS12500 -1.2 -2.8 carbon starvation protein A compare
DDA3937_RS19880 -1.2 -5.9 DNA helicase II compare
DDA3937_RS03300 -1.2 -1.4 site-specific tyrosine recombinase XerD compare
DDA3937_RS19140 -1.2 -5.3 Trk system potassium transporter TrkA compare
DDA3937_RS20700 -1.2 -1.5 hypothetical protein compare
DDA3937_RS20415 -1.2 -2.7 rhodanese-like domain-containing protein compare
DDA3937_RS15150 -1.2 -6.3 polyphosphate kinase 1 compare
DDA3937_RS13205 -1.2 -3.5 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
DDA3937_RS14775 -1.1 -1.4 type II secretion system minor pseudopilin GspI compare
DDA3937_RS04960 -1.1 -2.4 thymidylate synthase compare
DDA3937_RS14475 -1.1 -4.4 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS00645 -1.1 -4.7 cell division protein FtsX compare
DDA3937_RS15780 -1.1 -5.4 ATP-dependent RNA helicase SrmB compare
DDA3937_RS02855 -1.1 -1.6 hypothetical protein compare
DDA3937_RS14470 -1.1 -3.0 aspartate-semialdehyde dehydrogenase compare
DDA3937_RS09585 -1.0 -2.0 thioredoxin-disulfide reductase compare
DDA3937_RS04430 -1.0 -2.4 Hcp family type VI secretion system effector compare
DDA3937_RS19620 -1.0 -1.9 two-component system response regulator OmpR compare
DDA3937_RS12440 -1.0 -4.0 peptide ABC transporter substrate-binding protein SapA compare
DDA3937_RS23075 -1.0 -3.2 hypothetical protein compare
DDA3937_RS12425 -1.0 -1.7 phage shock protein PspA compare
DDA3937_RS03485 -1.0 -2.8 hypothetical protein compare
DDA3937_RS02815 -1.0 -2.3 transcriptional regulator ExuR compare
DDA3937_RS22235 -1.0 -3.3 immunity 8 family protein compare
DDA3937_RS08400 -1.0 -1.7 H-NS histone family protein compare
DDA3937_RS11445 -1.0 -4.2 DNA-binding transcriptional regulator KdgR compare
DDA3937_RS12450 -1.0 -2.6 peptide ABC transporter permease SapC compare
DDA3937_RS19910 -0.9 -2.4 iron donor protein CyaY compare
DDA3937_RS00140 -0.9 -4.6 ribosome-dependent GTPase TypA compare
DDA3937_RS00915 -0.9 -3.3 HslU--HslV peptidase ATPase subunit compare
DDA3937_RS06755 -0.9 -2.8 glycosyltransferase family 2 protein compare
DDA3937_RS13060 -0.9 -1.7 penicillin-binding protein activator LpoB compare
DDA3937_RS11715 -0.9 -2.6 hypothetical protein compare
DDA3937_RS00980 -0.9 -7.2 HTH-type transcriptional repressor FabR compare
DDA3937_RS06535 -0.9 -1.6 tRNA-Lys compare
DDA3937_RS03100 -0.9 -1.7 DEAD/DEAH family ATP-dependent RNA helicase compare
DDA3937_RS15745 -0.9 -3.7 elongation factor 4 compare
DDA3937_RS06350 -0.9 -2.7 replication initiation negative regulator SeqA compare
DDA3937_RS13555 -0.9 -6.1 flagellar motor stator protein MotA compare
DDA3937_RS04315 -0.9 -2.9 RnfH family protein compare
DDA3937_RS01530 -0.9 -2.8 RNA polymerase factor sigma-54 compare
DDA3937_RS15450 -0.9 -2.0 outer membrane protein assembly factor BamB compare
DDA3937_RS18670 -0.9 -3.0 ABC transporter permease compare
DDA3937_RS20265 -0.9 -0.9 YeeE/YedE family protein compare
DDA3937_RS03095 -0.9 -5.2 lipoprotein NlpI compare
DDA3937_RS06475 -0.8 -1.6 succinate--CoA ligase subunit alpha compare
DDA3937_RS20465 -0.8 -3.5 O-antigen ligase family protein compare
DDA3937_RS04945 -0.8 -4.5 RNA pyrophosphohydrolase compare
DDA3937_RS11205 -0.8 -3.5 septum site-determining protein MinC compare
DDA3937_RS11875 -0.8 -2.6 AAA family ATPase compare
DDA3937_RS13430 -0.8 -4.8 flagellar hook-associated protein FlgL compare
DDA3937_RS04655 -0.8 -4.3 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
DDA3937_RS01000 -0.8 -2.1 glutamate racemase compare
DDA3937_RS13340 -0.8 -4.1 flagellin FliC compare
DDA3937_RS20470 -0.8 -4.9 glycosyltransferase family 9 protein compare
DDA3937_RS11460 -0.8 -3.3 protease HtpX compare
DDA3937_RS13550 -0.8 -5.7 flagellar motor protein MotB compare
DDA3937_RS12575 -0.8 -1.2 pyridoxamine 5'-phosphate oxidase compare
DDA3937_RS00970 -0.8 -2.1 DNA-binding transcriptional regulator OxyR compare
DDA3937_RS02915 -0.8 -2.8 TetR/AcrR family transcriptional regulator compare
DDA3937_RS01855 -0.8 -2.0 aminoimidazole riboside kinase compare
DDA3937_RS02725 -0.8 -1.4 FxsA family protein compare
DDA3937_RS07005 -0.8 -1.9 type I addiction module toxin, SymE family compare
DDA3937_RS18615 -0.8 -1.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
DDA3937_RS14340 -0.8 -2.5 transcriptional regulator LrhA compare
DDA3937_RS07575 -0.8 -1.7 hypothetical protein compare
DDA3937_RS09010 -0.8 -2.9 transposase compare
DDA3937_RS23190 -0.8 -1.4 hypothetical protein compare
DDA3937_RS18560 -0.8 -2.2 glutathione synthase compare
DDA3937_RS02585 -0.8 -3.8 oligosaccharide flippase family protein compare
DDA3937_RS01915 -0.8 -1.2 2-iminobutanoate/2-iminopropanoate deaminase compare
DDA3937_RS10125 -0.7 -2.7 pyruvate kinase compare
DDA3937_RS05575 -0.7 -1.0 MFS transporter compare
DDA3937_RS13345 -0.7 -3.9 flagellar filament capping protein FliD compare
DDA3937_RS19440 -0.7 -1.7 OsmC family protein compare
DDA3937_RS13500 -0.7 -3.2 flagellar protein FlhE compare
DDA3937_RS18755 -0.7 -1.8 organic hydroperoxide resistance protein compare
DDA3937_RS05895 -0.7 -2.2 transcriptional regulator RcsB compare
DDA3937_RS10500 -0.7 -3.7 23S rRNA pseudouridine(2605) synthase RluB compare
DDA3937_RS11500 -0.7 -4.5 two-component system response regulator PhoP compare
DDA3937_RS06990 -0.7 -2.2 RHS domain-containing protein compare
DDA3937_RS09095 -0.7 -1.3 AlpA family phage regulatory protein compare
DDA3937_RS14630 -0.7 -2.3 tRNA-Arg compare
DDA3937_RS05635 -0.7 -3.5 trigger factor compare
DDA3937_RS19145 -0.7 -2.9 large-conductance mechanosensitive channel protein MscL compare
DDA3937_RS20975 -0.7 -4.0 mannitol-1-phosphate 5-dehydrogenase compare
DDA3937_RS16935 -0.7 -2.1 phosphoadenylyl-sulfate reductase compare
DDA3937_RS15115 -0.7 -2.8 HAAAP family serine/threonine permease compare
DDA3937_RS04600 -0.7 -2.0 putative selenium delivery protein YdfZ compare
DDA3937_RS14945 -0.7 -2.1 hypothetical protein compare
DDA3937_RS13560 -0.7 -5.0 flagellar transcriptional regulator FlhC compare
DDA3937_RS13495 -0.7 -2.3 flagellar export chaperone FlgN compare
DDA3937_RS15710 -0.7 -2.2 YfhL family 4Fe-4S dicluster ferredoxin compare
DDA3937_RS11145 -0.7 -2.2 type II toxin-antitoxin system ParD family antitoxin compare
DDA3937_RS19930 -0.7 -2.3 uroporphyrinogen-III C-methyltransferase compare
DDA3937_RS05615 -0.7 -1.6 cytochrome o ubiquinol oxidase subunit II compare
DDA3937_RS12280 -0.7 -0.8 YnbE family lipoprotein compare
DDA3937_RS19640 -0.7 -2.9 hypothetical protein compare
DDA3937_RS01570 -0.7 -3.3 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
DDA3937_RS05150 -0.7 -2.4 sigma E protease regulator RseP compare
DDA3937_RS12350 -0.7 -1.6 thiol peroxidase compare
DDA3937_RS20410 -0.7 -1.4 protein-export chaperone SecB compare
DDA3937_RS09120 -0.7 -1.0 YejL family protein compare
DDA3937_RS21445 -0.7 -2.5 ABC transporter substrate-binding protein compare
DDA3937_RS13320 -0.7 -5.3 ATP-grasp domain-containing protein compare
DDA3937_RS03990 -0.7 -1.3 CopG family transcriptional regulator compare
DDA3937_RS13160 -0.7 -1.1 ribonuclease E compare
DDA3937_RS04140 -0.6 -0.8 hypothetical protein compare
DDA3937_RS02395 -0.6 -0.9 Xaa-Pro aminopeptidase compare
DDA3937_RS06450 -0.6 -5.6 succinate dehydrogenase flavoprotein subunit compare
DDA3937_RS08645 -0.6 -3.2 ATP-dependent RNA helicase RhlE compare
DDA3937_RS00625 -0.6 -1.9 DUF1145 family protein compare
DDA3937_RS12620 -0.6 -2.5 HTH-type transcriptional repressor PurR compare
DDA3937_RS00135 -0.6 -1.1 glutamate--ammonia ligase compare
DDA3937_RS16110 -0.6 -4.5 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DDA3937_RS07440 -0.6 -3.0 hydrogenase 4 subunit H compare
DDA3937_RS07930 -0.6 -1.2 TonB family protein compare
DDA3937_RS06445 -0.6 -4.7 succinate dehydrogenase membrane anchor subunit compare
DDA3937_RS23340 -0.6 -1.0 ilvB operon leader peptide IvbL compare
DDA3937_RS06965 -0.6 -2.3 ankyrin repeat domain-containing protein compare
DDA3937_RS01495 -0.6 -2.8 ribosome-associated protein compare
DDA3937_RS06695 -0.6 -2.8 dCTP deaminase compare
DDA3937_RS14465 -0.6 -1.4 tRNA pseudouridine(38-40) synthase TruA compare
DDA3937_RS18600 -0.6 -1.2 FtsH protease activity modulator HflK compare
DDA3937_RS10405 -0.6 -1.3 cardiolipin synthase compare
DDA3937_RS14610 -0.6 -1.2 YfcZ/YiiS family protein compare
DDA3937_RS20690 -0.6 -2.0 hypothetical protein compare
DDA3937_RS10435 -0.6 -1.1 septation protein A compare
DDA3937_RS19395 -0.6 -2.9 peptidylprolyl isomerase compare
DDA3937_RS00590 -0.6 -2.8 inner membrane protein YhjD compare
DDA3937_RS08145 -0.6 -2.1 metal ABC transporter permease compare
DDA3937_RS18680 -0.6 -2.2 GDP-L-fucose synthase compare
DDA3937_RS00795 -0.6 -2.2 phage tail protein compare
DDA3937_RS00170 -0.6 -3.3 ATP-dependent DNA helicase RecG compare
DDA3937_RS16095 -0.6 -1.3 16S ribosomal RNA compare
DDA3937_RS12680 -0.6 -1.5 type II secretion system protein compare
DDA3937_RS21330 -0.6 -3.1 MBL fold metallo-hydrolase compare
DDA3937_RS08290 -0.6 -1.7 VOC family protein compare
DDA3937_RS02805 -0.6 -2.5 EnvZ/OmpR regulon moderator MzrA compare
DDA3937_RS02025 -0.6 -1.5 DUF1837 domain-containing protein compare
DDA3937_RS07490 -0.6 -3.0 glutamate/aspartate:proton symporter GltP compare
DDA3937_RS17985 -0.6 -2.4 cell division protein ZapD compare
DDA3937_RS03480 -0.5 -4.6 acetate--CoA ligase compare
DDA3937_RS13240 -0.5 -1.7 GhoT/OrtT family toxin compare
DDA3937_RS13435 -0.5 -4.6 flagellar hook-associated protein FlgK compare
DDA3937_RS10720 -0.5 -2.4 hypothetical protein compare
DDA3937_RS02445 -0.5 -1.1 peptide chain release factor 3 compare
DDA3937_RS01500 -0.5 -3.3 metalloprotease PmbA compare
DDA3937_RS09575 -0.5 -0.7 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
DDA3937_RS14905 -0.5 -1.2 PTS transporter subunit EIIB compare
DDA3937_RS08885 -0.5 -1.4 hypothetical protein compare
DDA3937_RS04150 -0.5 -3.0 hypothetical protein compare
DDA3937_RS13600 -0.5 -2.1 cytochrome b562 compare
DDA3937_RS20235 -0.5 -2.5 Trk system potassium transporter TrkH compare
DDA3937_RS09235 -0.5 -1.1 1-phosphofructokinase compare
DDA3937_RS21600 -0.5 -3.8 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
DDA3937_RS00050 -0.5 -3.9 ribokinase compare
DDA3937_RS01645 -0.5 -2.0 stringent starvation protein A compare
DDA3937_RS13475 -0.5 -2.8 flagellar basal body rod protein FlgC compare
DDA3937_RS15485 -0.5 -2.6 nucleoside-diphosphate kinase compare
DDA3937_RS18685 -0.5 -3.9 WbeA compare
DDA3937_RS15705 -0.5 -3.2 cyclic-guanylate-specific phosphodiesterase compare
DDA3937_RS13805 -0.5 -2.6 helix-turn-helix transcriptional regulator compare
DDA3937_RS13165 -0.5 -2.0 antibiotic biosynthesis monooxygenase compare
DDA3937_RS13325 -0.5 -3.4 DegT/DnrJ/EryC1/StrS family aminotransferase compare
DDA3937_RS08390 -0.5 -2.5 IS110 family transposase compare
DDA3937_RS18275 -0.5 -3.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare


Specific Phenotypes

None in this experiment

For Dickeya dadantii 3937 in control experiments

For control kanamycin across organisms