Experiment setATCH188 for Dickeya dianthicola ME23

Compare to:

Upstate

200 most important genes:

  gene name fitness t score description  
DZA65_RS05310 -3.8 -9.1 thymidylate synthase compare
DZA65_RS06895 -3.3 -6.8 Tol-Pal system protein TolQ compare
DZA65_RS21790 -3.3 -3.2 sulfurtransferase TusA compare
DZA65_RS11720 -3.0 -7.1 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DZA65_RS10585 -2.9 -8.0 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DZA65_RS03635 -2.9 -6.9 sugar transferase compare
DZA65_RS11865 -2.7 -6.0 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS09455 -2.6 -6.1 DUF3413 domain-containing protein compare
DZA65_RS00800 -2.5 -3.8 O-antigen ligase family protein compare
DZA65_RS10555 -2.5 -2.3 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
DZA65_RS10940 -2.4 -12.0 tryptophan synthase subunit alpha compare
DZA65_RS03625 -2.4 -17.1 polysaccharide biosynthesis protein compare
DZA65_RS02490 -2.4 -9.2 phosphoserine phosphatase compare
DZA65_RS13750 -2.4 -12.3 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS10965 -2.3 -12.2 anthranilate synthase component 1 compare
DZA65_RS19350 -2.3 -4.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
DZA65_RS18650 -2.3 -5.2 alanine racemase compare
DZA65_RS03260 -2.3 -7.5 lipoprotein NlpI compare
DZA65_RS10945 -2.2 -11.1 tryptophan synthase subunit beta compare
DZA65_RS11395 -2.2 -3.1 peptide chain release factor N(5)-glutamine methyltransferase compare
DZA65_RS19540 -2.2 -8.5 phosphoglycerate dehydrogenase compare
DZA65_RS13755 -2.2 -8.7 glucan biosynthesis protein G compare
DZA65_RS19290 -2.2 -2.4 hypothetical protein compare
DZA65_RS19745 -2.1 -9.1 GDP-L-fucose synthase compare
DZA65_RS09015 -2.1 -1.9 molybdopterin synthase sulfur carrier subunit compare
DZA65_RS12505 -2.0 -7.4 carboxy terminal-processing peptidase compare
DZA65_RS02945 -2.0 -2.4 transcriptional regulator ExuR compare
DZA65_RS16715 -2.0 -1.5 Fe-S cluster assembly scaffold IscU compare
DZA65_RS18160 -2.0 -2.2 glycerate kinase compare
DZA65_RS19735 -2.0 -6.3 ABC transporter permease compare
DZA65_RS03230 -2.0 -2.1 transcription termination/antitermination protein NusA compare
DZA65_RS16610 -2.0 -10.9 IMP dehydrogenase compare
DZA65_RS10955 -1.9 -5.1 anthranilate phosphoribosyltransferase compare
DZA65_RS06120 -1.9 -11.8 efflux RND transporter periplasmic adaptor subunit compare
DZA65_RS10950 -1.9 -9.2 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DZA65_RS01525 -1.9 -4.4 LPS export ABC transporter periplasmic protein LptC compare
DZA65_RS22145 -1.9 -2.5 DNA-directed RNA polymerase subunit omega compare
DZA65_RS20545 -1.9 -3.0 sulfurtransferase complex subunit TusB compare
DZA65_RS15370 -1.9 -6.0 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS06115 -1.9 -15.8 multidrug efflux RND transporter permease subunit compare
DZA65_RS21265 -1.8 -3.7 thioredoxin TrxA compare
DZA65_RS07120 -1.8 -2.3 dTDP-4-dehydrorhamnose 3,5-epimerase compare
DZA65_RS00790 -1.8 -2.8 glycosyltransferase family 4 protein compare
DZA65_RS19750 -1.8 -8.8 hypothetical protein compare
DZA65_RS20555 -1.8 -3.0 sulfurtransferase complex subunit TusD compare
DZA65_RS22005 -1.8 -8.6 inorganic phosphate transporter PitA compare
DZA65_RS19740 -1.7 -6.5 ABC transporter ATP-binding protein compare
DZA65_RS10915 -1.7 -6.4 septation protein A compare
DZA65_RS21420 -1.7 -11.5 glutamate racemase compare
DZA65_RS19730 -1.7 -11.3 GDP-mannose 4,6-dehydratase compare
DZA65_RS18550 -1.6 -9.0 diaminopimelate decarboxylase compare
DZA65_RS05500 -1.6 -4.2 molecular chaperone Skp compare
DZA65_RS10905 -1.6 -6.1 TonB system transport protein TonB compare
DZA65_RS06510 -1.6 -1.8 transcription antiterminator/RNA stability regulator CspE compare
DZA65_RS10810 -1.6 -8.1 formyltetrahydrofolate deformylase compare
DZA65_RS10960 -1.6 -3.3 C26 family cysteine hydrolase domain-containing family compare
DZA65_RS05975 -1.5 -2.3 cytochrome o ubiquinol oxidase subunit III compare
DZA65_RS21075 -1.5 -4.2 magnesium/cobalt transporter CorA compare
DZA65_RS00365 -1.5 -9.0 DMT family transporter compare
DZA65_RS21825 -1.5 -11.0 sugar kinase compare
DZA65_RS15520 -1.5 -8.0 tRNA-Arg compare
DZA65_RS13330 -1.5 -6.4 AI-2E family transporter YdiK compare
DZA65_RS05860 -1.5 -3.6 preprotein translocase subunit YajC compare
DZA65_RS01510 -1.5 -5.2 RNA polymerase factor sigma-54 compare
DZA65_RS20550 -1.5 -2.7 sulfurtransferase complex subunit TusC compare
DZA65_RS11020 -1.5 -8.5 HTH-type transcriptional regulator CysB compare
DZA65_RS13710 -1.5 -8.8 dihydroorotase compare
DZA65_RS11655 -1.5 -9.9 TerC family protein compare
DZA65_RS01260 -1.4 -10.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DZA65_RS16090 -1.4 -1.2 sulfurtransferase TusE compare
DZA65_RS10485 -1.4 -4.7 membrane protein compare
DZA65_RS00810 -1.4 -2.8 putative lipopolysaccharide heptosyltransferase III compare
DZA65_RS15995 -1.4 -6.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
DZA65_RS06470 -1.4 -5.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DZA65_RS06990 -1.4 -8.6 UDP-glucose 4-epimerase GalE compare
DZA65_RS19725 -1.4 -11.4 phosphomannomutase/phosphoglucomutase compare
DZA65_RS02505 -1.4 -3.0 peptide chain release factor 3 compare
DZA65_RS00740 -1.4 -2.4 nucleoid occlusion factor SlmA compare
DZA65_RS19215 -1.3 -4.2 3-isopropylmalate dehydratase small subunit compare
DZA65_RS00840 -1.3 -3.8 rhodanese-like domain-containing protein compare
DZA65_RS07125 -1.3 -7.8 dTDP-4-dehydrorhamnose reductase compare
DZA65_RS02300 -1.3 -2.0 type-1Ba cytolytic delta-endotoxin compare
DZA65_RS04355 -1.3 -7.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DZA65_RS21090 -1.3 -1.4 tyrosine recombinase XerC compare
DZA65_RS00795 -1.3 -5.3 glycosyltransferase family 9 protein compare
DZA65_RS07110 -1.3 -5.6 dTDP-glucose 4,6-dehydratase compare
DZA65_RS13085 -1.2 -3.9 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS18215 -1.2 -2.7 hypothetical protein compare
DZA65_RS19720 -1.2 -9.2 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
DZA65_RS03670 -1.2 -4.0 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
DZA65_RS06420 -1.2 -7.4 phosphoribosylformylglycinamidine cyclo-ligase compare
DZA65_RS02940 -1.2 -4.8 DedA family protein compare
DZA65_RS11360 -1.2 -5.3 fumarate/nitrate reduction transcriptional regulator Fnr compare
DZA65_RS19665 -1.2 -2.7 protease modulator HflC compare
DZA65_RS19755 -1.2 -6.2 glycosyltransferase compare
DZA65_RS01795 -1.2 -3.1 TonB system transport protein ExbD compare
DZA65_RS10550 -1.2 -2.9 murein DD-endopeptidase MepM compare
DZA65_RS14885 -1.2 -1.6 HyaD/HybD family hydrogenase maturation endopeptidase compare
DZA65_RS17035 -1.2 -2.8 helix-turn-helix transcriptional regulator compare
DZA65_RS01920 -1.2 -2.3 DUF1311 domain-containing protein compare
DZA65_RS21275 -1.2 -6.8 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
DZA65_RS19210 -1.2 -7.5 3-isopropylmalate dehydratase large subunit compare
DZA65_RS20220 -1.1 -6.3 glucose-6-phosphate isomerase compare
DZA65_RS11120 -1.1 -6.1 mannose-6-phosphate isomerase compare
DZA65_RS00735 -1.1 -5.1 orotate phosphoribosyltransferase compare
DZA65_RS22360 -1.1 -8.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DZA65_RS12230 -1.1 -2.7 HrpP protein compare
DZA65_RS13700 -1.1 -4.1 ribonuclease E compare
DZA65_RS16705 -1.1 -2.5 co-chaperone HscB compare
DZA65_RS07065 -1.1 -3.3 dCTP deaminase compare
DZA65_RS13875 -1.1 -6.6 flagellar filament capping protein FliD compare
DZA65_RS22240 -1.1 -7.0 thiol:disulfide interchange protein DsbA compare
DZA65_RS01585 -1.1 -6.7 serine endoprotease DegQ compare
DZA65_RS15990 -1.1 -2.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
DZA65_RS19475 -1.1 -4.2 threonine synthase compare
DZA65_RS21270 -1.1 -8.5 ATP-dependent RNA helicase RhlB compare
DZA65_RS15515 -1.1 -5.0 phospholipid-binding lipoprotein MlaA compare
DZA65_RS19175 -1.1 -5.6 catabolite repressor/activator compare
DZA65_RS10030 -1.1 -3.3 imidazole glycerol phosphate synthase subunit HisF compare
DZA65_RS10825 -1.1 -5.0 two-component system response regulator RssB compare
DZA65_RS22195 -1.0 -5.2 ribosome-dependent GTPase TypA compare
DZA65_RS16830 -1.0 -8.9 phosphoribosylformylglycinamidine synthase compare
DZA65_RS15280 -1.0 -3.6 acetate kinase compare
DZA65_RS06985 -1.0 -4.7 galactose-1-phosphate uridylyltransferase compare
DZA65_RS11715 -1.0 -6.0 5-dehydro-4-deoxy-D-glucuronate isomerase compare
DZA65_RS11925 -1.0 -1.8 DNA-damage-inducible protein J compare
DZA65_RS13390 -1.0 -5.8 quinone-dependent dihydroorotate dehydrogenase compare
DZA65_RS12020 -1.0 -3.3 ribonuclease toxin immunity protein CdiI compare
DZA65_RS19205 -1.0 -7.3 3-isopropylmalate dehydrogenase compare
DZA65_RS18310 -1.0 -4.1 HlyC/CorC family transporter compare
DZA65_RS22210 -1.0 -5.4 nitrogen regulation protein NR(I) compare
DZA65_RS10980 -1.0 -3.4 23S rRNA pseudouridine(2605) synthase RluB compare
DZA65_RS01560 -1.0 -5.2 phospholipid-binding protein MlaC compare
DZA65_RS00360 -1.0 -4.6 MarR family transcriptional regulator compare
DZA65_RS21545 -1.0 -2.8 DUF805 domain-containing protein compare
DZA65_RS21445 -1.0 -3.4 Si-specific NAD(P)(+) transhydrogenase compare
DZA65_RS13030 -1.0 -5.7 orotidine-5'-phosphate decarboxylase compare
DZA65_RS09020 -1.0 -3.7 molybdopterin synthase catalytic subunit MoaE compare
DZA65_RS01020 -1.0 -1.7 YeeE/YedE family protein compare
DZA65_RS11930 -1.0 -1.7 type I toxin-antitoxin system SymE family toxin compare
DZA65_RS04370 -1.0 -3.8 cysteine synthase A compare
DZA65_RS01790 -0.9 -6.8 tol-pal system-associated acyl-CoA thioesterase compare
DZA65_RS21115 -0.9 -4.9 class I adenylate cyclase compare
DZA65_RS15285 -0.9 -3.4 phosphate acetyltransferase compare
DZA65_RS04230 -0.9 -5.1 outer membrane protein assembly factor BamE compare
DZA65_RS09970 -0.9 -4.8 pyruvate formate lyase 1-activating protein compare
DZA65_RS09910 -0.9 -2.7 thioredoxin-disulfide reductase compare
DZA65_RS06625 -0.9 -4.2 CNNM family magnesium/cobalt transport protein CorC compare
DZA65_RS01875 -0.9 -3.1 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
DZA65_RS17270 -0.9 -6.9 murein transglycosylase D compare
DZA65_RS16260 -0.9 -2.6 VOC family protein compare
DZA65_RS00970 -0.9 -3.1 twin-arginine translocase subunit TatA compare
DZA65_RS19380 -0.9 -6.5 carbamoyl-phosphate synthase large subunit compare
DZA65_RS18320 -0.9 -3.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DZA65_RS13385 -0.8 -3.0 cell division protein ZapC compare
DZA65_RS16910 -0.8 -4.4 elongation factor 4 compare
DZA65_RS05490 -0.8 -4.9 sigma E protease regulator RseP compare
DZA65_RS06980 -0.8 -5.1 galactokinase compare
DZA65_RS21080 -0.8 -4.5 DNA helicase II compare
DZA65_RS02870 -0.8 -2.5 chorismate lyase compare
DZA65_RS03475 -0.8 -3.6 flavodoxin FldB compare
DZA65_RS01255 -0.8 -5.2 phosphoribosylamine--glycine ligase compare
DZA65_RS16710 -0.8 -1.7 iron-sulfur cluster assembly protein IscA compare
DZA65_RS19160 -0.8 -2.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DZA65_RS01545 -0.8 -2.9 phospholipid ABC transporter ATP-binding protein MlaF compare
DZA65_RS10580 -0.8 -4.6 glucose-6-phosphate dehydrogenase compare
DZA65_RS15760 -0.8 -6.5 beta-galactosidase compare
DZA65_RS19200 -0.8 -6.5 2-isopropylmalate synthase compare
DZA65_RS00845 -0.8 -1.9 protein-export chaperone SecB compare
DZA65_RS21755 -0.8 -4.1 cell division protein FtsX compare
DZA65_RS15150 -0.8 -2.2 hypothetical protein compare
DZA65_RS18915 -0.8 -2.9 DeoR/GlpR transcriptional regulator compare
DZA65_RS13670 -0.8 -3.2 phosphate acyltransferase PlsX compare
DZA65_RS06030 -0.8 -6.5 peptidylprolyl isomerase compare
DZA65_RS18600 -0.8 -1.3 DUF1330 domain-containing protein compare
DZA65_RS22965 -0.8 -1.7 hypothetical protein compare
DZA65_RS21615 -0.8 -2.0 envelope stress sensor histidine kinase CpxA compare
DZA65_RS12810 -0.8 -2.0 YnbE family lipoprotein compare
DZA65_RS06840 -0.8 -3.1 succinate dehydrogenase iron-sulfur subunit compare
DZA65_RS19520 -0.8 -2.7 trp operon repressor compare
DZA65_RS09460 -0.8 -1.9 YejL family protein compare
DZA65_RS11915 -0.8 -1.0 ferrous iron transport protein A compare
DZA65_RS05855 -0.8 -3.7 tRNA guanosine(34) transglycosylase Tgt compare
DZA65_RS00835 -0.7 -3.9 murein hydrolase activator EnvC compare
DZA65_RS08845 -0.7 -2.5 hypothetical protein compare
DZA65_RS08935 -0.7 -5.4 NAD-dependent malic enzyme compare
DZA65_RS10045 -0.7 -2.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
DZA65_RS07180 -0.7 -4.3 NADP-dependent phosphogluconate dehydrogenase compare
DZA65_RS04295 -0.7 -2.3 transcriptional regulator compare
DZA65_RS06415 -0.7 -3.1 phosphoribosylglycinamide formyltransferase compare
DZA65_RS17940 -0.7 -2.1 YfiM family lipoprotein compare
DZA65_RS17115 -0.7 -2.2 bifunctional glycosyl transferase/transpeptidase compare
DZA65_RS19195 -0.7 -2.0 leu operon leader peptide compare
DZA65_RS20560 -0.7 -2.7 transcriptional regulator compare
DZA65_RS12180 -0.7 -2.4 hypothetical protein compare
DZA65_RS20255 -0.7 -3.7 glyoxylate bypass operon transcriptional repressor IclR compare
DZA65_RS17460 -0.7 -2.9 SRPBCC family protein compare
DZA65_RS11435 -0.7 -2.3 redox-regulated ATPase YchF compare
DZA65_RS20840 -0.7 -2.4 two-component system response regulator OmpR compare
DZA65_RS14445 -0.7 -1.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola ME23 in plant experiments

For plant cv.Upstate across organisms