Experiment setATCH187 for Dickeya dianthicola ME23

Compare to:

Upstate

200 most important genes:

  gene name fitness t score description  
DZA65_RS05310 -4.3 -7.6 thymidylate synthase compare
DZA65_RS16090 -3.6 -2.5 sulfurtransferase TusE compare
DZA65_RS00800 -3.5 -5.4 O-antigen ligase family protein compare
DZA65_RS10585 -3.4 -9.0 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DZA65_RS06895 -3.4 -6.8 Tol-Pal system protein TolQ compare
DZA65_RS11865 -3.0 -6.2 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS10905 -2.9 -7.4 TonB system transport protein TonB compare
DZA65_RS02490 -2.8 -10.2 phosphoserine phosphatase compare
DZA65_RS16610 -2.6 -13.7 IMP dehydrogenase compare
DZA65_RS09240 -2.6 -2.6 biotin carboxyl carrier domain-containing protein compare
DZA65_RS21090 -2.4 -2.7 tyrosine recombinase XerC compare
DZA65_RS03635 -2.4 -7.9 sugar transferase compare
DZA65_RS02505 -2.4 -3.8 peptide chain release factor 3 compare
DZA65_RS20545 -2.3 -2.7 sulfurtransferase complex subunit TusB compare
DZA65_RS07120 -2.3 -3.6 dTDP-4-dehydrorhamnose 3,5-epimerase compare
DZA65_RS13755 -2.2 -8.4 glucan biosynthesis protein G compare
DZA65_RS19540 -2.2 -7.0 phosphoglycerate dehydrogenase compare
DZA65_RS06470 -2.1 -7.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DZA65_RS13750 -2.1 -12.0 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS18080 -2.1 -4.4 phosphoadenylyl-sulfate reductase compare
DZA65_RS03230 -2.0 -1.9 transcription termination/antitermination protein NusA compare
DZA65_RS03260 -2.0 -6.3 lipoprotein NlpI compare
DZA65_RS19290 -2.0 -2.2 hypothetical protein compare
DZA65_RS00790 -2.0 -1.8 glycosyltransferase family 4 protein compare
DZA65_RS01260 -2.0 -13.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DZA65_RS22965 -1.9 -2.5 hypothetical protein compare
DZA65_RS13710 -1.9 -10.9 dihydroorotase compare
DZA65_RS11720 -1.9 -6.9 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DZA65_RS12505 -1.9 -6.3 carboxy terminal-processing peptidase compare
DZA65_RS09455 -1.8 -5.1 DUF3413 domain-containing protein compare
DZA65_RS10485 -1.8 -6.0 membrane protein compare
DZA65_RS00365 -1.8 -9.9 DMT family transporter compare
DZA65_RS18320 -1.8 -6.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DZA65_RS15995 -1.8 -7.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
DZA65_RS05500 -1.8 -4.4 molecular chaperone Skp compare
DZA65_RS06420 -1.7 -10.8 phosphoribosylformylglycinamidine cyclo-ligase compare
DZA65_RS09910 -1.7 -4.8 thioredoxin-disulfide reductase compare
DZA65_RS15990 -1.7 -3.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
DZA65_RS21790 -1.7 -2.7 sulfurtransferase TusA compare
DZA65_RS00795 -1.7 -7.2 glycosyltransferase family 9 protein compare
DZA65_RS05860 -1.6 -3.4 preprotein translocase subunit YajC compare
DZA65_RS16830 -1.6 -13.2 phosphoribosylformylglycinamidine synthase compare
DZA65_RS01350 -1.6 -2.8 DNA-binding transcriptional regulator Fis compare
DZA65_RS20005 -1.6 -1.8 helix-turn-helix transcriptional regulator compare
DZA65_RS21420 -1.5 -9.8 glutamate racemase compare
DZA65_RS01970 -1.5 -10.0 aspartate carbamoyltransferase compare
DZA65_RS07125 -1.4 -8.1 dTDP-4-dehydrorhamnose reductase compare
DZA65_RS18650 -1.4 -4.1 alanine racemase compare
DZA65_RS13880 -1.4 -5.7 flagellar export chaperone FliS compare
DZA65_RS04230 -1.4 -7.0 outer membrane protein assembly factor BamE compare
DZA65_RS13030 -1.4 -7.3 orotidine-5'-phosphate decarboxylase compare
DZA65_RS19380 -1.4 -10.1 carbamoyl-phosphate synthase large subunit compare
DZA65_RS10915 -1.4 -4.6 septation protein A compare
DZA65_RS03625 -1.4 -10.7 polysaccharide biosynthesis protein compare
DZA65_RS10810 -1.3 -7.3 formyltetrahydrofolate deformylase compare
DZA65_RS01255 -1.3 -8.0 phosphoribosylamine--glycine ligase compare
DZA65_RS19745 -1.3 -6.1 GDP-L-fucose synthase compare
DZA65_RS03670 -1.3 -3.6 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
DZA65_RS15335 -1.3 -9.7 amidophosphoribosyltransferase compare
DZA65_RS17985 -1.3 -3.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
DZA65_RS13330 -1.2 -5.4 AI-2E family transporter YdiK compare
DZA65_RS16925 -1.2 -2.2 anti-sigma-E factor RseA compare
DZA65_RS13390 -1.2 -5.4 quinone-dependent dihydroorotate dehydrogenase compare
DZA65_RS00735 -1.2 -5.3 orotate phosphoribosyltransferase compare
DZA65_RS00810 -1.2 -2.5 putative lipopolysaccharide heptosyltransferase III compare
DZA65_RS15280 -1.2 -4.9 acetate kinase compare
DZA65_RS19215 -1.2 -3.7 3-isopropylmalate dehydratase small subunit compare
DZA65_RS11020 -1.2 -7.3 HTH-type transcriptional regulator CysB compare
DZA65_RS03255 -1.2 -2.1 polyribonucleotide nucleotidyltransferase compare
DZA65_RS17145 -1.2 -5.4 polynucleotide adenylyltransferase PcnB compare
DZA65_RS19740 -1.2 -5.2 ABC transporter ATP-binding protein compare
DZA65_RS21075 -1.2 -2.6 magnesium/cobalt transporter CorA compare
DZA65_RS12810 -1.2 -2.5 YnbE family lipoprotein compare
DZA65_RS16715 -1.2 -1.1 Fe-S cluster assembly scaffold IscU compare
DZA65_RS18020 -1.1 -7.3 RNA polymerase sigma factor RpoS compare
DZA65_RS19210 -1.1 -6.9 3-isopropylmalate dehydratase large subunit compare
DZA65_RS15285 -1.1 -4.7 phosphate acetyltransferase compare
DZA65_RS19655 -1.1 -1.4 adenylosuccinate synthase compare
DZA65_RS22005 -1.1 -6.5 inorganic phosphate transporter PitA compare
DZA65_RS15370 -1.1 -4.7 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS12020 -1.1 -3.9 ribonuclease toxin immunity protein CdiI compare
DZA65_RS20550 -1.1 -2.4 sulfurtransferase complex subunit TusC compare
DZA65_RS09015 -1.1 -1.3 molybdopterin synthase sulfur carrier subunit compare
DZA65_RS13645 -1.1 -3.9 beta-ketoacyl-ACP synthase II compare
DZA65_RS18550 -1.1 -6.2 diaminopimelate decarboxylase compare
DZA65_RS12945 -1.1 -3.7 phage shock protein PspA compare
DZA65_RS06990 -1.1 -7.4 UDP-glucose 4-epimerase GalE compare
DZA65_RS15520 -1.1 -5.5 tRNA-Arg compare
DZA65_RS04355 -1.1 -5.8 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DZA65_RS19385 -1.0 -6.0 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DZA65_RS21265 -1.0 -2.8 thioredoxin TrxA compare
DZA65_RS01510 -1.0 -4.2 RNA polymerase factor sigma-54 compare
DZA65_RS03465 -1.0 -2.6 FAD assembly factor SdhE compare
DZA65_RS01550 -1.0 -3.8 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
DZA65_RS20905 -1.0 -1.8 glycerol-3-phosphate dehydrogenase compare
DZA65_RS15200 -1.0 -2.0 hypothetical protein compare
DZA65_RS20775 -1.0 -1.1 DUF2531 family protein compare
DZA65_RS11120 -1.0 -5.9 mannose-6-phosphate isomerase compare
DZA65_RS19205 -1.0 -6.5 3-isopropylmalate dehydrogenase compare
DZA65_RS16635 -1.0 -1.9 outer membrane protein assembly factor BamB compare
DZA65_RS11390 -1.0 -4.2 tetratricopeptide repeat-containing protein compare
DZA65_RS01525 -1.0 -2.6 LPS export ABC transporter periplasmic protein LptC compare
DZA65_RS17950 -1.0 -1.6 5S ribosomal RNA compare
DZA65_RS09570 -1.0 -3.2 1-phosphofructokinase compare
DZA65_RS21825 -1.0 -7.6 sugar kinase compare
DZA65_RS01795 -1.0 -3.8 TonB system transport protein ExbD compare
DZA65_RS14335 -1.0 -3.1 transcriptional regulator compare
DZA65_RS13595 -1.0 -3.3 penicillin-binding protein activator LpoB compare
DZA65_RS19750 -1.0 -4.3 hypothetical protein compare
DZA65_RS02300 -0.9 -2.3 type-1Ba cytolytic delta-endotoxin compare
DZA65_RS02060 -0.9 -3.0 leucyl aminopeptidase compare
DZA65_RS00360 -0.9 -4.8 MarR family transcriptional regulator compare
DZA65_RS22210 -0.9 -5.3 nitrogen regulation protein NR(I) compare
DZA65_RS01405 -0.9 -7.5 RNase E specificity factor CsrD compare
DZA65_RS01790 -0.9 -6.4 tol-pal system-associated acyl-CoA thioesterase compare
DZA65_RS22240 -0.9 -5.7 thiol:disulfide interchange protein DsbA compare
DZA65_RS21270 -0.9 -6.6 ATP-dependent RNA helicase RhlB compare
DZA65_RS11655 -0.9 -6.4 TerC family protein compare
DZA65_RS22195 -0.9 -4.9 ribosome-dependent GTPase TypA compare
DZA65_RS01275 -0.9 -1.4 23S ribosomal RNA compare
DZA65_RS14030 -0.9 -3.9 flagellar protein FlhE compare
DZA65_RS22360 -0.9 -7.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DZA65_RS03300 -0.9 -3.3 GIY-YIG nuclease family protein compare
DZA65_RS13570 -0.9 -2.9 glycine zipper 2TM domain-containing protein compare
DZA65_RS01545 -0.9 -3.2 phospholipid ABC transporter ATP-binding protein MlaF compare
DZA65_RS21275 -0.9 -5.8 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
DZA65_RS11395 -0.9 -1.8 peptide chain release factor N(5)-glutamine methyltransferase compare
DZA65_RS04485 -0.9 -2.8 substrate-binding domain-containing protein compare
DZA65_RS06985 -0.9 -3.3 galactose-1-phosphate uridylyltransferase compare
DZA65_RS00350 -0.9 -1.7 hypothetical protein compare
DZA65_RS13040 -0.9 -1.7 LapA family protein compare
DZA65_RS19665 -0.9 -2.4 protease modulator HflC compare
DZA65_RS05985 -0.9 -2.4 cytochrome o ubiquinol oxidase subunit II compare
DZA65_RS16960 -0.8 -2.3 tRNA-Ala compare
DZA65_RS13875 -0.8 -5.7 flagellar filament capping protein FliD compare
DZA65_RS06660 -0.8 -1.2 tRNA-Met compare
DZA65_RS11435 -0.8 -2.2 redox-regulated ATPase YchF compare
DZA65_RS07895 -0.8 -3.0 ABC transporter ATP-binding protein compare
DZA65_RS07665 -0.8 -2.5 AlpA family transcriptional regulator compare
DZA65_RS06115 -0.8 -6.9 multidrug efflux RND transporter permease subunit compare
DZA65_RS19475 -0.8 -2.2 threonine synthase compare
DZA65_RS22635 -0.8 -1.7 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
DZA65_RS19725 -0.8 -6.6 phosphomannomutase/phosphoglucomutase compare
DZA65_RS16670 -0.8 -2.8 nucleoside-diphosphate kinase compare
DZA65_RS19200 -0.8 -5.9 2-isopropylmalate synthase compare
DZA65_RS21800 -0.8 -1.2 DcrB family lipoprotein compare
DZA65_RS03265 -0.8 -1.2 protein YrbN compare
DZA65_RS06495 -0.8 -3.2 M15 family metallopeptidase compare
DZA65_RS11360 -0.8 -2.8 fumarate/nitrate reduction transcriptional regulator Fnr compare
DZA65_RS13670 -0.8 -3.3 phosphate acyltransferase PlsX compare
DZA65_RS06020 -0.8 -3.4 endopeptidase La compare
DZA65_RS21545 -0.8 -1.8 DUF805 domain-containing protein compare
DZA65_RS06120 -0.7 -5.1 efflux RND transporter periplasmic adaptor subunit compare
DZA65_RS22690 -0.7 -1.8 IS3 family transposase compare
DZA65_RS04795 -0.7 -1.5 hypothetical protein compare
DZA65_RS11715 -0.7 -4.5 5-dehydro-4-deoxy-D-glucuronate isomerase compare
DZA65_RS19375 -0.7 -3.2 LysE family transporter compare
DZA65_RS06465 -0.7 -5.0 outer membrane protein assembly factor BamC compare
DZA65_RS16120 -0.7 -3.7 DNA helicase IV compare
DZA65_RS18270 -0.7 -2.3 glycerol-3-phosphate 1-O-acyltransferase PlsY compare
DZA65_RS04730 -0.7 -1.5 hypothetical protein compare
DZA65_RS19730 -0.7 -5.2 GDP-mannose 4,6-dehydratase compare
DZA65_RS12995 -0.7 -3.8 exoribonuclease II compare
DZA65_RS17185 -0.7 -2.9 hypoxanthine phosphoribosyltransferase compare
DZA65_RS01615 -0.7 -4.0 stringent starvation protein A compare
DZA65_RS22695 -0.7 -3.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DZA65_RS02940 -0.7 -2.4 DedA family protein compare
DZA65_RS14835 -0.7 -1.7 N-acetyltransferase compare
DZA65_RS16910 -0.7 -4.1 elongation factor 4 compare
DZA65_RS14055 -0.7 -4.8 chemotaxis response regulator protein-glutamate methylesterase compare
DZA65_RS18920 -0.7 -2.5 D-threonate 4-phosphate dehydrogenase compare
DZA65_RS06685 -0.7 -5.1 asparagine synthase B compare
DZA65_RS18400 -0.7 -1.3 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
DZA65_RS21590 -0.7 -1.9 DNA mismatch repair protein MutT compare
DZA65_RS16705 -0.7 -2.2 co-chaperone HscB compare
DZA65_RS09970 -0.7 -4.0 pyruvate formate lyase 1-activating protein compare
DZA65_RS11930 -0.7 -1.7 type I toxin-antitoxin system SymE family toxin compare
DZA65_RS01585 -0.7 -4.3 serine endoprotease DegQ compare
DZA65_RS19735 -0.7 -2.2 ABC transporter permease compare
DZA65_RS15145 -0.7 -2.8 hypothetical protein compare
DZA65_RS22705 -0.7 -2.1 membrane protein insertion efficiency factor YidD compare
DZA65_RS03495 -0.7 -3.4 single-stranded-DNA-specific exonuclease RecJ compare
DZA65_RS05620 -0.7 -1.8 GNAT family N-acetyltransferase compare
DZA65_RS01495 -0.7 -3.3 RNase adapter RapZ compare
DZA65_RS10555 -0.6 -0.8 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
DZA65_RS16260 -0.6 -2.1 VOC family protein compare
DZA65_RS19160 -0.6 -1.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DZA65_RS18785 -0.6 -1.2 hypothetical protein compare
DZA65_RS05445 -0.6 -3.5 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
DZA65_RS06900 -0.6 -0.6 colicin uptake protein TolR compare
DZA65_RS21115 -0.6 -3.8 class I adenylate cyclase compare
DZA65_RS15515 -0.6 -3.8 phospholipid-binding lipoprotein MlaA compare
DZA65_RS17775 -0.6 -2.8 acireductone synthase compare
DZA65_RS06415 -0.6 -3.0 phosphoribosylglycinamide formyltransferase compare
DZA65_RS16045 -0.6 -2.2 polyphosphate kinase 1 compare
DZA65_RS12245 -0.6 -1.2 type III secretion system export apparatus subunit SctS compare
DZA65_RS01005 -0.6 -1.7 NAD(P)H-flavin reductase compare
DZA65_RS11900 -0.6 -0.7 hypothetical protein compare
DZA65_RS15255 -0.6 -2.2 SLC13 family permease compare
DZA65_RS05855 -0.6 -2.9 tRNA guanosine(34) transglycosylase Tgt compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola ME23 in plant experiments

For plant cv.Upstate across organisms