Experiment setATCH186 for Dickeya dianthicola ME23

Compare to:

Upstate

200 most important genes:

  gene name fitness t score description  
DZA65_RS05310 -3.8 -8.9 thymidylate synthase compare
DZA65_RS10585 -3.6 -8.6 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DZA65_RS18160 -3.4 -2.0 glycerate kinase compare
DZA65_RS06895 -3.4 -6.4 Tol-Pal system protein TolQ compare
DZA65_RS01350 -3.1 -2.1 DNA-binding transcriptional regulator Fis compare
DZA65_RS03635 -2.9 -7.8 sugar transferase compare
DZA65_RS11865 -2.7 -5.1 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS19290 -2.6 -2.9 hypothetical protein compare
DZA65_RS13750 -2.5 -13.0 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS00800 -2.5 -3.8 O-antigen ligase family protein compare
DZA65_RS11720 -2.4 -7.4 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DZA65_RS06900 -2.4 -2.3 colicin uptake protein TolR compare
DZA65_RS07120 -2.3 -3.3 dTDP-4-dehydrorhamnose 3,5-epimerase compare
DZA65_RS13755 -2.3 -8.8 glucan biosynthesis protein G compare
DZA65_RS12505 -2.2 -7.9 carboxy terminal-processing peptidase compare
DZA65_RS21420 -2.1 -14.0 glutamate racemase compare
DZA65_RS18655 -2.0 -2.5 DUF1471 domain-containing protein compare
DZA65_RS03260 -2.0 -6.6 lipoprotein NlpI compare
DZA65_RS09455 -2.0 -4.0 DUF3413 domain-containing protein compare
DZA65_RS10555 -2.0 -2.0 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
DZA65_RS03670 -2.0 -5.2 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
DZA65_RS16635 -1.9 -2.8 outer membrane protein assembly factor BamB compare
DZA65_RS11395 -1.9 -3.0 peptide chain release factor N(5)-glutamine methyltransferase compare
DZA65_RS16610 -1.9 -10.6 IMP dehydrogenase compare
DZA65_RS19540 -1.8 -7.2 phosphoglycerate dehydrogenase compare
DZA65_RS19745 -1.8 -8.2 GDP-L-fucose synthase compare
DZA65_RS02490 -1.8 -6.8 phosphoserine phosphatase compare
DZA65_RS22005 -1.8 -9.4 inorganic phosphate transporter PitA compare
DZA65_RS00810 -1.8 -3.4 putative lipopolysaccharide heptosyltransferase III compare
DZA65_RS20550 -1.8 -3.2 sulfurtransferase complex subunit TusC compare
DZA65_RS03625 -1.8 -11.6 polysaccharide biosynthesis protein compare
DZA65_RS01525 -1.7 -4.1 LPS export ABC transporter periplasmic protein LptC compare
DZA65_RS22635 -1.7 -3.7 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
DZA65_RS21790 -1.7 -2.6 sulfurtransferase TusA compare
DZA65_RS19740 -1.6 -7.0 ABC transporter ATP-binding protein compare
DZA65_RS13085 -1.6 -4.2 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS01920 -1.6 -4.6 DUF1311 domain-containing protein compare
DZA65_RS10905 -1.6 -5.7 TonB system transport protein TonB compare
DZA65_RS10810 -1.6 -8.0 formyltetrahydrofolate deformylase compare
DZA65_RS02300 -1.6 -2.5 type-1Ba cytolytic delta-endotoxin compare
DZA65_RS15520 -1.5 -6.2 tRNA-Arg compare
DZA65_RS10915 -1.5 -5.5 septation protein A compare
DZA65_RS00790 -1.5 -1.2 glycosyltransferase family 4 protein compare
DZA65_RS14835 -1.5 -2.7 N-acetyltransferase compare
DZA65_RS05900 -1.5 -1.7 transcription antitermination factor NusB compare
DZA65_RS06990 -1.5 -8.4 UDP-glucose 4-epimerase GalE compare
DZA65_RS15990 -1.5 -3.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
DZA65_RS19735 -1.4 -3.6 ABC transporter permease compare
DZA65_RS22895 -1.4 -2.7 hypothetical protein compare
DZA65_RS19350 -1.4 -3.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
DZA65_RS15285 -1.4 -5.4 phosphate acetyltransferase compare
DZA65_RS04355 -1.4 -8.0 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DZA65_RS01260 -1.3 -8.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DZA65_RS21825 -1.3 -9.3 sugar kinase compare
DZA65_RS20005 -1.3 -1.9 helix-turn-helix transcriptional regulator compare
DZA65_RS18080 -1.3 -2.6 phosphoadenylyl-sulfate reductase compare
DZA65_RS22705 -1.2 -3.5 membrane protein insertion efficiency factor YidD compare
DZA65_RS16705 -1.2 -3.2 co-chaperone HscB compare
DZA65_RS21090 -1.2 -1.7 tyrosine recombinase XerC compare
DZA65_RS13710 -1.2 -7.3 dihydroorotase compare
DZA65_RS16830 -1.2 -10.1 phosphoribosylformylglycinamidine synthase compare
DZA65_RS17255 -1.2 -1.9 ribonuclease HI compare
DZA65_RS13595 -1.2 -3.9 penicillin-binding protein activator LpoB compare
DZA65_RS18650 -1.2 -3.3 alanine racemase compare
DZA65_RS15995 -1.2 -5.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
DZA65_RS01545 -1.2 -3.7 phospholipid ABC transporter ATP-binding protein MlaF compare
DZA65_RS05500 -1.1 -3.2 molecular chaperone Skp compare
DZA65_RS15200 -1.1 -2.0 hypothetical protein compare
DZA65_RS11360 -1.1 -4.6 fumarate/nitrate reduction transcriptional regulator Fnr compare
DZA65_RS10485 -1.1 -4.1 membrane protein compare
DZA65_RS20220 -1.1 -6.9 glucose-6-phosphate isomerase compare
DZA65_RS18550 -1.1 -6.3 diaminopimelate decarboxylase compare
DZA65_RS01370 -1.1 -2.0 YhdT family protein compare
DZA65_RS00795 -1.1 -3.6 glycosyltransferase family 9 protein compare
DZA65_RS21510 -1.1 -7.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
DZA65_RS22195 -1.1 -5.6 ribosome-dependent GTPase TypA compare
DZA65_RS21265 -1.1 -2.9 thioredoxin TrxA compare
DZA65_RS13040 -1.1 -2.8 LapA family protein compare
DZA65_RS00365 -1.1 -5.9 DMT family transporter compare
DZA65_RS21275 -1.1 -6.7 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
DZA65_RS18270 -1.1 -2.6 glycerol-3-phosphate 1-O-acyltransferase PlsY compare
DZA65_RS19655 -1.0 -2.0 adenylosuccinate synthase compare
DZA65_RS19750 -1.0 -5.2 hypothetical protein compare
DZA65_RS11715 -1.0 -6.0 5-dehydro-4-deoxy-D-glucuronate isomerase compare
DZA65_RS01560 -1.0 -6.1 phospholipid-binding protein MlaC compare
DZA65_RS19175 -1.0 -6.3 catabolite repressor/activator compare
DZA65_RS19160 -1.0 -2.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DZA65_RS02505 -1.0 -1.9 peptide chain release factor 3 compare
DZA65_RS19730 -1.0 -7.3 GDP-mannose 4,6-dehydratase compare
DZA65_RS22360 -1.0 -7.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DZA65_RS13030 -1.0 -6.3 orotidine-5'-phosphate decarboxylase compare
DZA65_RS06420 -1.0 -5.1 phosphoribosylformylglycinamidine cyclo-ligase compare
DZA65_RS20555 -1.0 -2.0 sulfurtransferase complex subunit TusD compare
DZA65_RS19475 -1.0 -3.8 threonine synthase compare
DZA65_RS21270 -1.0 -7.7 ATP-dependent RNA helicase RhlB compare
DZA65_RS04700 -1.0 -1.5 transposase compare
DZA65_RS06820 -1.0 -1.8 citrate synthase compare
DZA65_RS21075 -1.0 -2.4 magnesium/cobalt transporter CorA compare
DZA65_RS13330 -1.0 -4.5 AI-2E family transporter YdiK compare
DZA65_RS13390 -0.9 -5.1 quinone-dependent dihydroorotate dehydrogenase compare
DZA65_RS15280 -0.9 -4.0 acetate kinase compare
DZA65_RS12995 -0.9 -4.7 exoribonuclease II compare
DZA65_RS01790 -0.9 -6.5 tol-pal system-associated acyl-CoA thioesterase compare
DZA65_RS19205 -0.9 -6.5 3-isopropylmalate dehydrogenase compare
DZA65_RS01550 -0.9 -3.5 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
DZA65_RS22210 -0.9 -5.7 nitrogen regulation protein NR(I) compare
DZA65_RS19495 -0.9 -1.3 two-component system response regulator ArcA compare
DZA65_RS16090 -0.9 -1.1 sulfurtransferase TusE compare
DZA65_RS15370 -0.9 -3.3 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS21615 -0.9 -2.5 envelope stress sensor histidine kinase CpxA compare
DZA65_RS16910 -0.9 -4.7 elongation factor 4 compare
DZA65_RS09240 -0.9 -1.2 biotin carboxyl carrier domain-containing protein compare
DZA65_RS08120 -0.9 -3.1 iron ABC transporter permease compare
DZA65_RS19955 -0.9 -2.4 nitrogen fixation protein NifW compare
DZA65_RS13645 -0.9 -3.6 beta-ketoacyl-ACP synthase II compare
DZA65_RS10940 -0.9 -5.2 tryptophan synthase subunit alpha compare
DZA65_RS06115 -0.9 -7.6 multidrug efflux RND transporter permease subunit compare
DZA65_RS22410 -0.9 -2.4 F0F1 ATP synthase subunit epsilon compare
DZA65_RS22145 -0.9 -1.6 DNA-directed RNA polymerase subunit omega compare
DZA65_RS16060 -0.9 -2.5 DksA/TraR family C4-type zinc finger protein compare
DZA65_RS01795 -0.9 -2.7 TonB system transport protein ExbD compare
DZA65_RS08135 -0.9 -2.0 RraA family protein compare
DZA65_RS19380 -0.8 -6.4 carbamoyl-phosphate synthase large subunit compare
DZA65_RS12020 -0.8 -3.2 ribonuclease toxin immunity protein CdiI compare
DZA65_RS19725 -0.8 -7.1 phosphomannomutase/phosphoglucomutase compare
DZA65_RS11120 -0.8 -4.3 mannose-6-phosphate isomerase compare
DZA65_RS05240 -0.8 -3.1 oxidative damage protection protein compare
DZA65_RS10980 -0.8 -2.9 23S rRNA pseudouridine(2605) synthase RluB compare
DZA65_RS06660 -0.8 -1.8 tRNA-Met compare
DZA65_RS15335 -0.8 -6.7 amidophosphoribosyltransferase compare
DZA65_RS01255 -0.8 -5.3 phosphoribosylamine--glycine ligase compare
DZA65_RS07110 -0.8 -3.5 dTDP-glucose 4,6-dehydratase compare
DZA65_RS21115 -0.8 -4.1 class I adenylate cyclase compare
DZA65_RS07125 -0.8 -5.3 dTDP-4-dehydrorhamnose reductase compare
DZA65_RS07995 -0.8 -3.5 phosphonate metabolism protein PhnP compare
DZA65_RS11655 -0.8 -5.6 TerC family protein compare
DZA65_RS11930 -0.8 -1.8 type I toxin-antitoxin system SymE family toxin compare
DZA65_RS06510 -0.8 -1.2 transcription antiterminator/RNA stability regulator CspE compare
DZA65_RS03775 -0.8 -1.6 MarR family transcriptional regulator compare
DZA65_RS22240 -0.8 -5.0 thiol:disulfide interchange protein DsbA compare
DZA65_RS02940 -0.8 -3.0 DedA family protein compare
DZA65_RS01510 -0.8 -2.7 RNA polymerase factor sigma-54 compare
DZA65_RS00740 -0.8 -1.6 nucleoid occlusion factor SlmA compare
DZA65_RS20545 -0.8 -1.7 sulfurtransferase complex subunit TusB compare
DZA65_RS19210 -0.8 -5.2 3-isopropylmalate dehydratase large subunit compare
DZA65_RS16640 -0.8 -2.4 YfgM family protein compare
DZA65_RS04230 -0.8 -4.4 outer membrane protein assembly factor BamE compare
DZA65_RS21080 -0.8 -4.1 DNA helicase II compare
DZA65_RS19665 -0.8 -2.1 protease modulator HflC compare
DZA65_RS01875 -0.8 -3.1 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
DZA65_RS11020 -0.8 -4.6 HTH-type transcriptional regulator CysB compare
DZA65_RS22880 -0.8 -2.5 YciY family protein compare
DZA65_RS17595 -0.8 -2.4 hypothetical protein compare
DZA65_RS06985 -0.8 -3.5 galactose-1-phosphate uridylyltransferase compare
DZA65_RS15760 -0.8 -5.8 beta-galactosidase compare
DZA65_RS21050 -0.8 -0.9 hypothetical protein compare
DZA65_RS16885 -0.7 -3.6 pyridoxine 5'-phosphate synthase compare
DZA65_RS06470 -0.7 -3.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DZA65_RS19720 -0.7 -5.7 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
DZA65_RS19755 -0.7 -4.7 glycosyltransferase compare
DZA65_RS21610 -0.7 -4.0 envelope stress response regulator transcription factor CpxR compare
DZA65_RS09975 -0.7 -6.0 formate C-acetyltransferase compare
DZA65_RS21755 -0.7 -3.7 cell division protein FtsX compare
DZA65_RS06360 -0.7 -1.7 ABC transporter ATP-binding protein compare
DZA65_RS07915 -0.7 -1.5 aspartate/glutamate racemase family protein compare
DZA65_RS20860 -0.7 -3.0 RNA-binding transcriptional accessory protein compare
DZA65_RS21575 -0.7 -1.7 6-phosphofructokinase compare
DZA65_RS03255 -0.7 -1.3 polyribonucleotide nucleotidyltransferase compare
DZA65_RS07065 -0.7 -2.7 dCTP deaminase compare
DZA65_RS11920 -0.7 -2.6 type II toxin-antitoxin system RelE/ParE family toxin compare
DZA65_RS16960 -0.7 -1.8 tRNA-Ala compare
DZA65_RS09570 -0.7 -2.1 1-phosphofructokinase compare
DZA65_RS06335 -0.7 -1.5 DUF1778 domain-containing protein compare
DZA65_RS13125 -0.7 -2.2 Grx4 family monothiol glutaredoxin compare
DZA65_RS18200 -0.7 -1.4 hypothetical protein compare
DZA65_RS16670 -0.7 -2.3 nucleoside-diphosphate kinase compare
DZA65_RS16725 -0.7 -1.7 Fe-S cluster assembly transcriptional regulator IscR compare
DZA65_RS00835 -0.7 -3.6 murein hydrolase activator EnvC compare
DZA65_RS12230 -0.7 -1.3 HrpP protein compare
DZA65_RS10965 -0.7 -4.6 anthranilate synthase component 1 compare
DZA65_RS05445 -0.7 -3.8 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
DZA65_RS10755 -0.7 -3.5 peptide-methionine (R)-S-oxide reductase MsrB compare
DZA65_RS04215 -0.7 -1.7 SsrA-binding protein SmpB compare
DZA65_RS02980 -0.7 -4.5 altronate dehydratase compare
DZA65_RS09020 -0.7 -1.7 molybdopterin synthase catalytic subunit MoaE compare
DZA65_RS06120 -0.7 -4.1 efflux RND transporter periplasmic adaptor subunit compare
DZA65_RS05945 -0.7 -2.4 YajQ family cyclic di-GMP-binding protein compare
DZA65_RS02060 -0.6 -2.0 leucyl aminopeptidase compare
DZA65_RS13875 -0.6 -3.8 flagellar filament capping protein FliD compare
DZA65_RS20185 -0.6 -4.3 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
DZA65_RS16715 -0.6 -0.7 Fe-S cluster assembly scaffold IscU compare
DZA65_RS14735 -0.6 -1.7 NAD(P)H-dependent oxidoreductase compare
DZA65_RS10580 -0.6 -3.4 glucose-6-phosphate dehydrogenase compare
DZA65_RS12535 -0.6 -3.7 YebW family protein compare
DZA65_RS01405 -0.6 -5.2 RNase E specificity factor CsrD compare
DZA65_RS16690 -0.6 -1.2 Fe-S cluster assembly protein IscX compare
DZA65_RS15785 -0.6 -4.5 ABC transporter ATP-binding protein compare
DZA65_RS01780 -0.6 -3.9 DedA family protein compare
DZA65_RS00970 -0.6 -2.2 twin-arginine translocase subunit TatA compare
DZA65_RS02095 -0.6 -1.2 helix-turn-helix transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola ME23 in plant experiments

For plant cv.Upstate across organisms