Experiment setATCH185 for Dickeya dianthicola ME23

Compare to:

Upstate

200 most important genes:

  gene name fitness t score description  
DZA65_RS05310 -3.9 -9.7 thymidylate synthase compare
DZA65_RS16090 -2.8 -2.6 sulfurtransferase TusE compare
DZA65_RS10585 -2.8 -8.2 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DZA65_RS11720 -2.6 -7.7 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DZA65_RS02490 -2.4 -9.1 phosphoserine phosphatase compare
DZA65_RS10905 -2.3 -8.0 TonB system transport protein TonB compare
DZA65_RS13755 -2.3 -8.6 glucan biosynthesis protein G compare
DZA65_RS20550 -2.2 -3.6 sulfurtransferase complex subunit TusC compare
DZA65_RS19290 -2.2 -2.6 hypothetical protein compare
DZA65_RS21790 -2.2 -3.8 sulfurtransferase TusA compare
DZA65_RS06895 -2.2 -5.5 Tol-Pal system protein TolQ compare
DZA65_RS13750 -2.2 -12.9 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS18650 -2.1 -4.8 alanine racemase compare
DZA65_RS21090 -2.1 -2.6 tyrosine recombinase XerC compare
DZA65_RS11865 -2.1 -3.9 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS06510 -2.1 -2.7 transcription antiterminator/RNA stability regulator CspE compare
DZA65_RS00800 -2.0 -3.1 O-antigen ligase family protein compare
DZA65_RS03260 -2.0 -6.1 lipoprotein NlpI compare
DZA65_RS09455 -2.0 -5.2 DUF3413 domain-containing protein compare
DZA65_RS12505 -2.0 -6.4 carboxy terminal-processing peptidase compare
DZA65_RS16610 -1.9 -10.9 IMP dehydrogenase compare
DZA65_RS10965 -1.9 -11.6 anthranilate synthase component 1 compare
DZA65_RS19540 -1.8 -5.5 phosphoglycerate dehydrogenase compare
DZA65_RS10945 -1.8 -10.9 tryptophan synthase subunit beta compare
DZA65_RS10810 -1.7 -9.0 formyltetrahydrofolate deformylase compare
DZA65_RS18020 -1.7 -10.4 RNA polymerase sigma factor RpoS compare
DZA65_RS20545 -1.7 -3.1 sulfurtransferase complex subunit TusB compare
DZA65_RS07120 -1.7 -3.4 dTDP-4-dehydrorhamnose 3,5-epimerase compare
DZA65_RS18160 -1.6 -1.6 glycerate kinase compare
DZA65_RS11655 -1.6 -11.2 TerC family protein compare
DZA65_RS19655 -1.6 -3.1 adenylosuccinate synthase compare
DZA65_RS03670 -1.6 -5.3 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
DZA65_RS00810 -1.6 -3.3 putative lipopolysaccharide heptosyltransferase III compare
DZA65_RS10915 -1.6 -5.2 septation protein A compare
DZA65_RS10940 -1.5 -7.7 tryptophan synthase subunit alpha compare
DZA65_RS13330 -1.5 -6.5 AI-2E family transporter YdiK compare
DZA65_RS03210 -1.5 -2.1 preprotein translocase subunit SecG compare
DZA65_RS09910 -1.5 -4.3 thioredoxin-disulfide reductase compare
DZA65_RS19740 -1.4 -6.1 ABC transporter ATP-binding protein compare
DZA65_RS13710 -1.4 -8.4 dihydroorotase compare
DZA65_RS19735 -1.4 -4.5 ABC transporter permease compare
DZA65_RS03635 -1.4 -4.3 sugar transferase compare
DZA65_RS06990 -1.4 -8.8 UDP-glucose 4-epimerase GalE compare
DZA65_RS21445 -1.4 -4.1 Si-specific NAD(P)(+) transhydrogenase compare
DZA65_RS01370 -1.4 -2.1 YhdT family protein compare
DZA65_RS19745 -1.4 -7.2 GDP-L-fucose synthase compare
DZA65_RS15995 -1.3 -7.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
DZA65_RS03255 -1.3 -2.3 polyribonucleotide nucleotidyltransferase compare
DZA65_RS21825 -1.3 -9.7 sugar kinase compare
DZA65_RS22195 -1.3 -7.2 ribosome-dependent GTPase TypA compare
DZA65_RS10955 -1.3 -4.0 anthranilate phosphoribosyltransferase compare
DZA65_RS13390 -1.3 -6.0 quinone-dependent dihydroorotate dehydrogenase compare
DZA65_RS20555 -1.3 -2.6 sulfurtransferase complex subunit TusD compare
DZA65_RS21265 -1.3 -3.7 thioredoxin TrxA compare
DZA65_RS00735 -1.3 -4.8 orotate phosphoribosyltransferase compare
DZA65_RS15370 -1.3 -5.3 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS10960 -1.3 -3.6 C26 family cysteine hydrolase domain-containing family compare
DZA65_RS05500 -1.3 -3.8 molecular chaperone Skp compare
DZA65_RS01260 -1.2 -8.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DZA65_RS14145 -1.2 -3.2 hypothetical protein compare
DZA65_RS21420 -1.2 -8.4 glutamate racemase compare
DZA65_RS22410 -1.2 -2.5 F0F1 ATP synthase subunit epsilon compare
DZA65_RS18320 -1.2 -4.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DZA65_RS01920 -1.2 -2.8 DUF1311 domain-containing protein compare
DZA65_RS00365 -1.2 -5.7 DMT family transporter compare
DZA65_RS12945 -1.2 -4.1 phage shock protein PspA compare
DZA65_RS06470 -1.2 -5.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DZA65_RS08815 -1.1 -1.9 type II toxin-antitoxin system CcdA family antitoxin compare
DZA65_RS19160 -1.1 -2.5 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DZA65_RS00840 -1.1 -3.8 rhodanese-like domain-containing protein compare
DZA65_RS04355 -1.1 -7.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DZA65_RS16045 -1.1 -4.6 polyphosphate kinase 1 compare
DZA65_RS19350 -1.1 -3.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
DZA65_RS00835 -1.1 -4.8 murein hydrolase activator EnvC compare
DZA65_RS02940 -1.1 -3.7 DedA family protein compare
DZA65_RS10950 -1.1 -5.7 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DZA65_RS11120 -1.1 -5.9 mannose-6-phosphate isomerase compare
DZA65_RS20005 -1.1 -1.8 helix-turn-helix transcriptional regulator compare
DZA65_RS18600 -1.1 -2.2 DUF1330 domain-containing protein compare
DZA65_RS18310 -1.1 -3.8 HlyC/CorC family transporter compare
DZA65_RS00790 -1.0 -1.9 glycosyltransferase family 4 protein compare
DZA65_RS13700 -1.0 -3.6 ribonuclease E compare
DZA65_RS13085 -1.0 -3.7 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS06625 -1.0 -5.3 CNNM family magnesium/cobalt transport protein CorC compare
DZA65_RS01550 -1.0 -4.9 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
DZA65_RS01545 -1.0 -3.6 phospholipid ABC transporter ATP-binding protein MlaF compare
DZA65_RS04230 -1.0 -5.6 outer membrane protein assembly factor BamE compare
DZA65_RS01560 -1.0 -6.3 phospholipid-binding protein MlaC compare
DZA65_RS02505 -1.0 -1.9 peptide chain release factor 3 compare
DZA65_RS10485 -1.0 -3.5 membrane protein compare
DZA65_RS16830 -1.0 -8.6 phosphoribosylformylglycinamidine synthase compare
DZA65_RS21755 -1.0 -4.9 cell division protein FtsX compare
DZA65_RS21610 -1.0 -4.8 envelope stress response regulator transcription factor CpxR compare
DZA65_RS06420 -1.0 -6.2 phosphoribosylformylglycinamidine cyclo-ligase compare
DZA65_RS22695 -1.0 -5.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DZA65_RS01255 -1.0 -6.6 phosphoribosylamine--glycine ligase compare
DZA65_RS11435 -1.0 -3.5 redox-regulated ATPase YchF compare
DZA65_RS22360 -1.0 -7.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DZA65_RS15990 -1.0 -2.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
DZA65_RS21760 -1.0 -2.8 cell division ATP-binding protein FtsE compare
DZA65_RS22735 -1.0 -2.0 hypothetical protein compare
DZA65_RS00360 -1.0 -4.6 MarR family transcriptional regulator compare
DZA65_RS02870 -1.0 -2.5 chorismate lyase compare
DZA65_RS18550 -0.9 -5.8 diaminopimelate decarboxylase compare
DZA65_RS18165 -0.9 -5.2 2-hydroxy-3-oxopropionate reductase compare
DZA65_RS03625 -0.9 -7.8 polysaccharide biosynthesis protein compare
DZA65_RS01405 -0.9 -7.6 RNase E specificity factor CsrD compare
DZA65_RS22005 -0.9 -5.6 inorganic phosphate transporter PitA compare
DZA65_RS06985 -0.9 -4.5 galactose-1-phosphate uridylyltransferase compare
DZA65_RS09015 -0.9 -1.2 molybdopterin synthase sulfur carrier subunit compare
DZA65_RS01525 -0.9 -2.3 LPS export ABC transporter periplasmic protein LptC compare
DZA65_RS19730 -0.9 -6.7 GDP-mannose 4,6-dehydratase compare
DZA65_RS15335 -0.9 -7.3 amidophosphoribosyltransferase compare
DZA65_RS16635 -0.9 -1.7 outer membrane protein assembly factor BamB compare
DZA65_RS19175 -0.9 -5.8 catabolite repressor/activator compare
DZA65_RS12685 -0.9 -1.4 hypothetical protein compare
DZA65_RS22210 -0.9 -5.1 nitrogen regulation protein NR(I) compare
DZA65_RS01585 -0.9 -5.0 serine endoprotease DegQ compare
DZA65_RS06005 -0.9 -4.7 trigger factor compare
DZA65_RS13595 -0.9 -3.2 penicillin-binding protein activator LpoB compare
DZA65_RS22240 -0.8 -5.8 thiol:disulfide interchange protein DsbA compare
DZA65_RS18915 -0.8 -3.4 DeoR/GlpR transcriptional regulator compare
DZA65_RS19210 -0.8 -4.8 3-isopropylmalate dehydratase large subunit compare
DZA65_RS08120 -0.8 -3.8 iron ABC transporter permease compare
DZA65_RS13645 -0.8 -3.6 beta-ketoacyl-ACP synthase II compare
DZA65_RS02060 -0.8 -2.7 leucyl aminopeptidase compare
DZA65_RS11830 -0.8 -4.3 DNA-binding transcriptional regulator KdgR compare
DZA65_RS01970 -0.8 -5.6 aspartate carbamoyltransferase compare
DZA65_RS10550 -0.8 -2.1 murein DD-endopeptidase MepM compare
DZA65_RS16640 -0.8 -2.5 YfgM family protein compare
DZA65_RS19720 -0.8 -6.2 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
DZA65_RS15520 -0.8 -5.2 tRNA-Arg compare
DZA65_RS00795 -0.8 -3.9 glycosyltransferase family 9 protein compare
DZA65_RS01615 -0.8 -4.7 stringent starvation protein A compare
DZA65_RS11020 -0.8 -4.9 HTH-type transcriptional regulator CysB compare
DZA65_RS14880 -0.8 -2.8 hydrogenase-2 assembly chaperone compare
DZA65_RS21510 -0.8 -5.5 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
DZA65_RS02945 -0.8 -1.6 transcriptional regulator ExuR compare
DZA65_RS17270 -0.8 -6.4 murein transglycosylase D compare
DZA65_RS22970 -0.8 -1.8 protein MgtS compare
DZA65_RS19750 -0.8 -4.2 hypothetical protein compare
DZA65_RS13380 -0.8 -2.6 MOSC domain-containing protein compare
DZA65_RS06115 -0.8 -6.8 multidrug efflux RND transporter permease subunit compare
DZA65_RS19725 -0.8 -6.2 phosphomannomutase/phosphoglucomutase compare
DZA65_RS11715 -0.8 -4.5 5-dehydro-4-deoxy-D-glucuronate isomerase compare
DZA65_RS01430 -0.8 -3.0 ribonuclease G compare
DZA65_RS18080 -0.8 -1.6 phosphoadenylyl-sulfate reductase compare
DZA65_RS13670 -0.8 -3.1 phosphate acyltransferase PlsX compare
DZA65_RS07125 -0.8 -4.7 dTDP-4-dehydrorhamnose reductase compare
DZA65_RS09990 -0.7 -1.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
DZA65_RS01790 -0.7 -5.3 tol-pal system-associated acyl-CoA thioesterase compare
DZA65_RS09515 -0.7 -2.6 hypothetical protein compare
DZA65_RS19475 -0.7 -2.3 threonine synthase compare
DZA65_RS20860 -0.7 -3.6 RNA-binding transcriptional accessory protein compare
DZA65_RS16710 -0.7 -1.4 iron-sulfur cluster assembly protein IscA compare
DZA65_RS06020 -0.7 -4.2 endopeptidase La compare
DZA65_RS07065 -0.7 -2.7 dCTP deaminase compare
DZA65_RS15280 -0.7 -3.5 acetate kinase compare
DZA65_RS01510 -0.7 -3.3 RNA polymerase factor sigma-54 compare
DZA65_RS07110 -0.7 -4.0 dTDP-glucose 4,6-dehydratase compare
DZA65_RS19520 -0.7 -2.9 trp operon repressor compare
DZA65_RS22635 -0.7 -1.5 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
DZA65_RS20220 -0.7 -4.2 glucose-6-phosphate isomerase compare
DZA65_RS19215 -0.7 -2.3 3-isopropylmalate dehydratase small subunit compare
DZA65_RS19380 -0.7 -4.9 carbamoyl-phosphate synthase large subunit compare
DZA65_RS05985 -0.7 -2.1 cytochrome o ubiquinol oxidase subunit II compare
DZA65_RS15285 -0.7 -3.0 phosphate acetyltransferase compare
DZA65_RS12020 -0.7 -2.8 ribonuclease toxin immunity protein CdiI compare
DZA65_RS15515 -0.7 -3.8 phospholipid-binding lipoprotein MlaA compare
DZA65_RS21080 -0.7 -3.7 DNA helicase II compare
DZA65_RS21115 -0.7 -3.8 class I adenylate cyclase compare
DZA65_RS13030 -0.7 -3.7 orotidine-5'-phosphate decarboxylase compare
DZA65_RS09705 -0.7 -4.6 outer membrane permeability protein SanA compare
DZA65_RS19320 -0.7 -3.6 co-chaperone DjlA compare
DZA65_RS15555 -0.7 -3.6 iron-enterobactin ABC transporter permease compare
DZA65_RS15495 -0.7 -2.9 hypothetical protein compare
DZA65_RS01710 -0.7 -0.8 outer membrane channel protein TolC compare
DZA65_RS17115 -0.7 -2.2 bifunctional glycosyl transferase/transpeptidase compare
DZA65_RS11360 -0.7 -3.3 fumarate/nitrate reduction transcriptional regulator Fnr compare
DZA65_RS19755 -0.7 -2.8 glycosyltransferase compare
DZA65_RS00980 -0.7 -4.8 Sec-independent protein translocase subunit TatC compare
DZA65_RS21170 -0.7 -2.8 SnoaL-like domain-containing protein compare
DZA65_RS19205 -0.7 -4.6 3-isopropylmalate dehydrogenase compare
DZA65_RS14440 -0.7 -2.2 kikA from plasmid origin compare
DZA65_RS02980 -0.7 -4.7 altronate dehydratase compare
DZA65_RS19480 -0.7 -2.3 homoserine kinase compare
DZA65_RS18625 -0.7 -2.7 envelope stress response protein PspG compare
DZA65_RS09915 -0.6 -3.4 leucine-responsive transcriptional regulator Lrp compare
DZA65_RS21800 -0.6 -1.5 DcrB family lipoprotein compare
DZA65_RS16960 -0.6 -2.3 tRNA-Ala compare
DZA65_RS08720 -0.6 -2.7 MarR family transcriptional regulator compare
DZA65_RS21270 -0.6 -5.0 ATP-dependent RNA helicase RhlB compare
DZA65_RS11395 -0.6 -1.3 peptide chain release factor N(5)-glutamine methyltransferase compare
DZA65_RS12875 -0.6 -2.4 thiol peroxidase compare
DZA65_RS16925 -0.6 -1.0 anti-sigma-E factor RseA compare
DZA65_RS04730 -0.6 -2.7 hypothetical protein compare
DZA65_RS11525 -0.6 -1.8 hypothetical protein compare
DZA65_RS14030 -0.6 -3.0 flagellar protein FlhE compare
DZA65_RS18400 -0.6 -1.2 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
DZA65_RS17145 -0.6 -2.5 polynucleotide adenylyltransferase PcnB compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola ME23 in plant experiments

For plant cv.Upstate across organisms