Experiment setATCH184 for Dickeya dianthicola ME23

Compare to:

Upstate

200 most important genes:

  gene name fitness t score description  
DZA65_RS05310 -4.2 -8.9 thymidylate synthase compare
DZA65_RS18160 -3.7 -2.1 glycerate kinase compare
DZA65_RS06895 -3.5 -7.3 Tol-Pal system protein TolQ compare
DZA65_RS19290 -3.2 -4.2 hypothetical protein compare
DZA65_RS11720 -2.9 -7.6 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DZA65_RS10905 -2.9 -8.2 TonB system transport protein TonB compare
DZA65_RS00800 -2.9 -3.9 O-antigen ligase family protein compare
DZA65_RS21790 -2.9 -3.8 sulfurtransferase TusA compare
DZA65_RS21090 -2.7 -3.0 tyrosine recombinase XerC compare
DZA65_RS10585 -2.7 -6.1 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DZA65_RS02505 -2.5 -4.6 peptide chain release factor 3 compare
DZA65_RS03635 -2.4 -8.5 sugar transferase compare
DZA65_RS00790 -2.4 -2.1 glycosyltransferase family 4 protein compare
DZA65_RS20555 -2.3 -3.4 sulfurtransferase complex subunit TusD compare
DZA65_RS09455 -2.3 -6.1 DUF3413 domain-containing protein compare
DZA65_RS16090 -2.3 -2.3 sulfurtransferase TusE compare
DZA65_RS13755 -2.2 -8.9 glucan biosynthesis protein G compare
DZA65_RS21420 -2.2 -15.2 glutamate racemase compare
DZA65_RS18650 -2.2 -4.1 alanine racemase compare
DZA65_RS01350 -2.2 -3.2 DNA-binding transcriptional regulator Fis compare
DZA65_RS13750 -2.2 -11.4 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS02490 -2.2 -8.1 phosphoserine phosphatase compare
DZA65_RS11865 -2.1 -4.4 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS03255 -2.1 -2.7 polyribonucleotide nucleotidyltransferase compare
DZA65_RS03260 -2.1 -7.5 lipoprotein NlpI compare
DZA65_RS01920 -2.0 -7.1 DUF1311 domain-containing protein compare
DZA65_RS21050 -1.9 -1.6 hypothetical protein compare
DZA65_RS19745 -1.9 -8.8 GDP-L-fucose synthase compare
DZA65_RS19540 -1.9 -8.0 phosphoglycerate dehydrogenase compare
DZA65_RS20545 -1.9 -3.3 sulfurtransferase complex subunit TusB compare
DZA65_RS02300 -1.9 -3.2 type-1Ba cytolytic delta-endotoxin compare
DZA65_RS13085 -1.8 -5.6 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS04355 -1.8 -10.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DZA65_RS16610 -1.8 -11.2 IMP dehydrogenase compare
DZA65_RS19350 -1.6 -3.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
DZA65_RS12505 -1.6 -5.9 carboxy terminal-processing peptidase compare
DZA65_RS10915 -1.6 -6.2 septation protein A compare
DZA65_RS11360 -1.6 -5.8 fumarate/nitrate reduction transcriptional regulator Fnr compare
DZA65_RS05840 -1.6 -2.5 peroxiredoxin C compare
DZA65_RS07120 -1.6 -2.8 dTDP-4-dehydrorhamnose 3,5-epimerase compare
DZA65_RS03625 -1.6 -12.3 polysaccharide biosynthesis protein compare
DZA65_RS21825 -1.6 -11.3 sugar kinase compare
DZA65_RS15280 -1.6 -5.8 acetate kinase compare
DZA65_RS19750 -1.6 -8.1 hypothetical protein compare
DZA65_RS22195 -1.6 -8.1 ribosome-dependent GTPase TypA compare
DZA65_RS10810 -1.6 -8.3 formyltetrahydrofolate deformylase compare
DZA65_RS00845 -1.5 -3.3 protein-export chaperone SecB compare
DZA65_RS06985 -1.5 -5.1 galactose-1-phosphate uridylyltransferase compare
DZA65_RS10940 -1.5 -7.9 tryptophan synthase subunit alpha compare
DZA65_RS19740 -1.5 -6.2 ABC transporter ATP-binding protein compare
DZA65_RS06990 -1.4 -7.6 UDP-glucose 4-epimerase GalE compare
DZA65_RS04730 -1.4 -3.8 hypothetical protein compare
DZA65_RS03210 -1.4 -2.4 preprotein translocase subunit SecG compare
DZA65_RS20550 -1.4 -3.1 sulfurtransferase complex subunit TusC compare
DZA65_RS18080 -1.4 -3.8 phosphoadenylyl-sulfate reductase compare
DZA65_RS10555 -1.4 -1.4 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
DZA65_RS15285 -1.4 -4.9 phosphate acetyltransferase compare
DZA65_RS11655 -1.4 -9.3 TerC family protein compare
DZA65_RS06470 -1.4 -6.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DZA65_RS04230 -1.4 -7.5 outer membrane protein assembly factor BamE compare
DZA65_RS01525 -1.4 -3.2 LPS export ABC transporter periplasmic protein LptC compare
DZA65_RS13330 -1.3 -5.8 AI-2E family transporter YdiK compare
DZA65_RS10485 -1.3 -3.6 membrane protein compare
DZA65_RS16715 -1.3 -1.2 Fe-S cluster assembly scaffold IscU compare
DZA65_RS18550 -1.3 -7.2 diaminopimelate decarboxylase compare
DZA65_RS19730 -1.3 -9.2 GDP-mannose 4,6-dehydratase compare
DZA65_RS10945 -1.3 -7.1 tryptophan synthase subunit beta compare
DZA65_RS22360 -1.3 -10.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DZA65_RS05500 -1.3 -3.8 molecular chaperone Skp compare
DZA65_RS00900 -1.3 -3.6 ATP-binding cassette domain-containing protein compare
DZA65_RS19725 -1.3 -10.5 phosphomannomutase/phosphoglucomutase compare
DZA65_RS21510 -1.3 -8.4 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
DZA65_RS21265 -1.3 -3.9 thioredoxin TrxA compare
DZA65_RS19755 -1.3 -7.1 glycosyltransferase compare
DZA65_RS03605 -1.2 -1.8 cation efflux system protein CusF compare
DZA65_RS19720 -1.2 -8.6 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
DZA65_RS22240 -1.2 -8.2 thiol:disulfide interchange protein DsbA compare
DZA65_RS15520 -1.2 -6.0 tRNA-Arg compare
DZA65_RS22005 -1.2 -6.1 inorganic phosphate transporter PitA compare
DZA65_RS01260 -1.2 -8.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DZA65_RS19160 -1.2 -3.3 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DZA65_RS22695 -1.2 -6.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DZA65_RS10965 -1.2 -7.2 anthranilate synthase component 1 compare
DZA65_RS00795 -1.2 -5.6 glycosyltransferase family 9 protein compare
DZA65_RS01585 -1.2 -6.9 serine endoprotease DegQ compare
DZA65_RS21755 -1.2 -4.6 cell division protein FtsX compare
DZA65_RS15580 -1.2 -5.6 enterochelin esterase compare
DZA65_RS01560 -1.2 -7.2 phospholipid-binding protein MlaC compare
DZA65_RS06115 -1.1 -10.1 multidrug efflux RND transporter permease subunit compare
DZA65_RS09970 -1.1 -6.2 pyruvate formate lyase 1-activating protein compare
DZA65_RS11120 -1.1 -5.9 mannose-6-phosphate isomerase compare
DZA65_RS06660 -1.1 -2.4 tRNA-Met compare
DZA65_RS13875 -1.1 -7.7 flagellar filament capping protein FliD compare
DZA65_RS07110 -1.1 -6.1 dTDP-glucose 4,6-dehydratase compare
DZA65_RS19175 -1.1 -6.9 catabolite repressor/activator compare
DZA65_RS22640 -1.1 -5.8 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
DZA65_RS19735 -1.1 -3.9 ABC transporter permease compare
DZA65_RS11915 -1.1 -1.7 ferrous iron transport protein A compare
DZA65_RS16830 -1.1 -9.3 phosphoribosylformylglycinamidine synthase compare
DZA65_RS20220 -1.1 -6.3 glucose-6-phosphate isomerase compare
DZA65_RS01790 -1.1 -7.2 tol-pal system-associated acyl-CoA thioesterase compare
DZA65_RS21445 -1.1 -4.1 Si-specific NAD(P)(+) transhydrogenase compare
DZA65_RS01545 -1.1 -2.6 phospholipid ABC transporter ATP-binding protein MlaF compare
DZA65_RS06420 -1.0 -6.8 phosphoribosylformylglycinamidine cyclo-ligase compare
DZA65_RS12945 -1.0 -3.4 phage shock protein PspA compare
DZA65_RS21760 -1.0 -3.7 cell division ATP-binding protein FtsE compare
DZA65_RS19655 -1.0 -2.3 adenylosuccinate synthase compare
DZA65_RS19475 -1.0 -3.5 threonine synthase compare
DZA65_RS15555 -1.0 -4.6 iron-enterobactin ABC transporter permease compare
DZA65_RS21075 -1.0 -2.9 magnesium/cobalt transporter CorA compare
DZA65_RS21610 -1.0 -4.5 envelope stress response regulator transcription factor CpxR compare
DZA65_RS07065 -1.0 -3.5 dCTP deaminase compare
DZA65_RS18020 -1.0 -6.5 RNA polymerase sigma factor RpoS compare
DZA65_RS03670 -1.0 -2.7 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
DZA65_RS16635 -1.0 -1.6 outer membrane protein assembly factor BamB compare
DZA65_RS14045 -1.0 -5.3 protein phosphatase CheZ compare
DZA65_RS21270 -1.0 -7.5 ATP-dependent RNA helicase RhlB compare
DZA65_RS00835 -0.9 -5.3 murein hydrolase activator EnvC compare
DZA65_RS07125 -0.9 -5.8 dTDP-4-dehydrorhamnose reductase compare
DZA65_RS15995 -0.9 -4.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
DZA65_RS12995 -0.9 -4.7 exoribonuclease II compare
DZA65_RS21080 -0.9 -5.4 DNA helicase II compare
DZA65_RS00980 -0.9 -6.0 Sec-independent protein translocase subunit TatC compare
DZA65_RS16705 -0.9 -3.1 co-chaperone HscB compare
DZA65_RS04215 -0.9 -2.4 SsrA-binding protein SmpB compare
DZA65_RS05860 -0.9 -2.1 preprotein translocase subunit YajC compare
DZA65_RS14310 -0.9 -1.2 LysR family transcriptional regulator compare
DZA65_RS03185 -0.9 -1.1 ribosome assembly RNA-binding protein YhbY compare
DZA65_RS01795 -0.9 -2.9 TonB system transport protein ExbD compare
DZA65_RS14055 -0.9 -5.8 chemotaxis response regulator protein-glutamate methylesterase compare
DZA65_RS05240 -0.9 -3.9 oxidative damage protection protein compare
DZA65_RS10580 -0.9 -5.8 glucose-6-phosphate dehydrogenase compare
DZA65_RS20005 -0.9 -1.5 helix-turn-helix transcriptional regulator compare
DZA65_RS11435 -0.9 -2.6 redox-regulated ATPase YchF compare
DZA65_RS00810 -0.9 -2.0 putative lipopolysaccharide heptosyltransferase III compare
DZA65_RS11715 -0.9 -5.3 5-dehydro-4-deoxy-D-glucuronate isomerase compare
DZA65_RS20560 -0.9 -3.7 transcriptional regulator compare
DZA65_RS10950 -0.9 -4.8 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DZA65_RS12940 -0.9 -2.7 envelope stress response membrane protein PspB compare
DZA65_RS13710 -0.9 -5.2 dihydroorotase compare
DZA65_RS03525 -0.9 -1.7 hypothetical protein compare
DZA65_RS06120 -0.9 -6.0 efflux RND transporter periplasmic adaptor subunit compare
DZA65_RS01550 -0.9 -3.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
DZA65_RS22210 -0.8 -5.0 nitrogen regulation protein NR(I) compare
DZA65_RS09910 -0.8 -2.1 thioredoxin-disulfide reductase compare
DZA65_RS01510 -0.8 -3.5 RNA polymerase factor sigma-54 compare
DZA65_RS11930 -0.8 -1.8 type I toxin-antitoxin system SymE family toxin compare
DZA65_RS20255 -0.8 -5.0 glyoxylate bypass operon transcriptional repressor IclR compare
DZA65_RS13645 -0.8 -3.2 beta-ketoacyl-ACP synthase II compare
DZA65_RS13880 -0.8 -3.5 flagellar export chaperone FliS compare
DZA65_RS04040 -0.8 -1.2 hypothetical protein compare
DZA65_RS21115 -0.8 -4.3 class I adenylate cyclase compare
DZA65_RS01255 -0.8 -4.8 phosphoribosylamine--glycine ligase compare
DZA65_RS11020 -0.8 -4.6 HTH-type transcriptional regulator CysB compare
DZA65_RS15605 -0.8 -1.7 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
DZA65_RS05295 -0.8 -1.4 RNA pyrophosphohydrolase compare
DZA65_RS14515 -0.8 -2.0 transposase compare
DZA65_RS07460 -0.8 -3.7 SDR family oxidoreductase compare
DZA65_RS05930 -0.8 -4.0 tRNA 4-thiouridine(8) synthase ThiI compare
DZA65_RS10955 -0.8 -2.5 anthranilate phosphoribosyltransferase compare
DZA65_RS15335 -0.8 -6.5 amidophosphoribosyltransferase compare
DZA65_RS12020 -0.8 -3.2 ribonuclease toxin immunity protein CdiI compare
DZA65_RS18270 -0.8 -2.6 glycerol-3-phosphate 1-O-acyltransferase PlsY compare
DZA65_RS18915 -0.8 -3.1 DeoR/GlpR transcriptional regulator compare
DZA65_RS22840 -0.8 -1.2 hypothetical protein compare
DZA65_RS06145 -0.8 -1.3 DUF454 family protein compare
DZA65_RS04390 -0.8 -2.0 accessory factor UbiK family protein compare
DZA65_RS03495 -0.8 -4.0 single-stranded-DNA-specific exonuclease RecJ compare
DZA65_RS10980 -0.8 -2.4 23S rRNA pseudouridine(2605) synthase RluB compare
DZA65_RS11395 -0.8 -1.6 peptide chain release factor N(5)-glutamine methyltransferase compare
DZA65_RS12810 -0.8 -1.1 YnbE family lipoprotein compare
DZA65_RS22735 -0.8 -1.5 hypothetical protein compare
DZA65_RS00840 -0.8 -2.4 rhodanese-like domain-containing protein compare
DZA65_RS16960 -0.8 -1.9 tRNA-Ala compare
DZA65_RS00095 -0.8 -1.9 AsnC family transcriptional regulator compare
DZA65_RS03470 -0.8 -3.2 membrane protein compare
DZA65_RS11585 -0.8 -3.2 septum site-determining protein MinC compare
DZA65_RS19685 -0.8 -1.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
DZA65_RS18310 -0.8 -3.5 HlyC/CorC family transporter compare
DZA65_RS05790 -0.7 -1.8 recombination-associated protein RdgC compare
DZA65_RS10410 -0.7 -2.9 GPW/gp25 family protein compare
DZA65_RS03230 -0.7 -0.9 transcription termination/antitermination protein NusA compare
DZA65_RS09990 -0.7 -1.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
DZA65_RS15515 -0.7 -4.1 phospholipid-binding lipoprotein MlaA compare
DZA65_RS15175 -0.7 -1.7 hypothetical protein compare
DZA65_RS01495 -0.7 -3.4 RNase adapter RapZ compare
DZA65_RS06825 -0.7 -4.2 succinate dehydrogenase cytochrome b556 subunit compare
DZA65_RS06030 -0.7 -5.9 peptidylprolyl isomerase compare
DZA65_RS18320 -0.7 -3.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DZA65_RS20840 -0.7 -2.7 two-component system response regulator OmpR compare
DZA65_RS14005 -0.7 -2.9 flagellar basal body rod protein FlgC compare
DZA65_RS19380 -0.7 -5.5 carbamoyl-phosphate synthase large subunit compare
DZA65_RS15990 -0.7 -1.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
DZA65_RS06565 -0.7 -2.3 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
DZA65_RS20875 -0.7 -1.8 Fe-S biogenesis protein NfuA compare
DZA65_RS22635 -0.7 -1.7 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
DZA65_RS08595 -0.7 -1.8 type VI secretion system-associated protein TagO compare
DZA65_RS00735 -0.7 -3.5 orotate phosphoribosyltransferase compare
DZA65_RS10720 -0.7 -1.9 GlsB/YeaQ/YmgE family stress response membrane protein compare
DZA65_RS06625 -0.7 -4.0 CNNM family magnesium/cobalt transport protein CorC compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola ME23 in plant experiments

For plant cv.Upstate across organisms