Experiment setATCH183 for Dickeya dianthicola ME23

Compare to:

Upstate

200 most important genes:

  gene name fitness t score description  
DZA65_RS05310 -3.3 -9.2 thymidylate synthase compare
DZA65_RS06895 -3.1 -7.5 Tol-Pal system protein TolQ compare
DZA65_RS16090 -3.1 -2.9 sulfurtransferase TusE compare
DZA65_RS10585 -2.8 -8.0 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DZA65_RS18650 -2.6 -6.0 alanine racemase compare
DZA65_RS21790 -2.5 -3.5 sulfurtransferase TusA compare
DZA65_RS10550 -2.5 -4.7 murein DD-endopeptidase MepM compare
DZA65_RS00800 -2.5 -3.9 O-antigen ligase family protein compare
DZA65_RS00790 -2.4 -2.0 glycosyltransferase family 4 protein compare
DZA65_RS11720 -2.4 -8.0 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DZA65_RS16610 -2.4 -13.1 IMP dehydrogenase compare
DZA65_RS02490 -2.3 -9.0 phosphoserine phosphatase compare
DZA65_RS13750 -2.3 -13.0 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS10905 -2.3 -8.3 TonB system transport protein TonB compare
DZA65_RS11865 -2.2 -6.0 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS18160 -2.2 -1.5 glycerate kinase compare
DZA65_RS07120 -2.2 -3.9 dTDP-4-dehydrorhamnose 3,5-epimerase compare
DZA65_RS12505 -2.1 -6.9 carboxy terminal-processing peptidase compare
DZA65_RS20550 -2.1 -3.8 sulfurtransferase complex subunit TusC compare
DZA65_RS19540 -2.0 -6.1 phosphoglycerate dehydrogenase compare
DZA65_RS19350 -2.0 -4.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
DZA65_RS09910 -1.9 -5.2 thioredoxin-disulfide reductase compare
DZA65_RS10915 -1.8 -6.2 septation protein A compare
DZA65_RS09455 -1.8 -5.2 DUF3413 domain-containing protein compare
DZA65_RS13755 -1.8 -7.3 glucan biosynthesis protein G compare
DZA65_RS13330 -1.7 -8.5 AI-2E family transporter YdiK compare
DZA65_RS00810 -1.7 -2.9 putative lipopolysaccharide heptosyltransferase III compare
DZA65_RS15370 -1.7 -6.5 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS11655 -1.7 -11.4 TerC family protein compare
DZA65_RS01585 -1.6 -9.9 serine endoprotease DegQ compare
DZA65_RS13710 -1.6 -9.6 dihydroorotase compare
DZA65_RS04230 -1.6 -8.1 outer membrane protein assembly factor BamE compare
DZA65_RS11395 -1.6 -3.1 peptide chain release factor N(5)-glutamine methyltransferase compare
DZA65_RS06470 -1.6 -6.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DZA65_RS19495 -1.6 -2.4 two-component system response regulator ArcA compare
DZA65_RS10810 -1.6 -8.2 formyltetrahydrofolate deformylase compare
DZA65_RS20555 -1.6 -2.9 sulfurtransferase complex subunit TusD compare
DZA65_RS00365 -1.6 -8.5 DMT family transporter compare
DZA65_RS16715 -1.5 -1.5 Fe-S cluster assembly scaffold IscU compare
DZA65_RS13030 -1.5 -7.5 orotidine-5'-phosphate decarboxylase compare
DZA65_RS19290 -1.5 -2.0 hypothetical protein compare
DZA65_RS03670 -1.5 -5.2 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
DZA65_RS03635 -1.5 -5.3 sugar transferase compare
DZA65_RS11435 -1.5 -4.7 redox-regulated ATPase YchF compare
DZA65_RS01260 -1.5 -9.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DZA65_RS00795 -1.4 -6.7 glycosyltransferase family 9 protein compare
DZA65_RS20905 -1.4 -2.4 glycerol-3-phosphate dehydrogenase compare
DZA65_RS06990 -1.4 -9.2 UDP-glucose 4-epimerase GalE compare
DZA65_RS03260 -1.4 -4.3 lipoprotein NlpI compare
DZA65_RS13390 -1.4 -6.4 quinone-dependent dihydroorotate dehydrogenase compare
DZA65_RS01545 -1.4 -3.7 phospholipid ABC transporter ATP-binding protein MlaF compare
DZA65_RS19740 -1.3 -6.4 ABC transporter ATP-binding protein compare
DZA65_RS13085 -1.3 -4.2 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS05975 -1.3 -1.8 cytochrome o ubiquinol oxidase subunit III compare
DZA65_RS19750 -1.3 -7.3 hypothetical protein compare
DZA65_RS19745 -1.3 -6.6 GDP-L-fucose synthase compare
DZA65_RS01370 -1.3 -2.4 YhdT family protein compare
DZA65_RS06420 -1.3 -7.5 phosphoribosylformylglycinamidine cyclo-ligase compare
DZA65_RS03210 -1.3 -1.7 preprotein translocase subunit SecG compare
DZA65_RS16830 -1.3 -10.7 phosphoribosylformylglycinamidine synthase compare
DZA65_RS21420 -1.3 -8.8 glutamate racemase compare
DZA65_RS15995 -1.3 -6.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
DZA65_RS01005 -1.3 -3.2 NAD(P)H-flavin reductase compare
DZA65_RS22005 -1.3 -7.3 inorganic phosphate transporter PitA compare
DZA65_RS00900 -1.3 -4.7 ATP-binding cassette domain-containing protein compare
DZA65_RS15280 -1.2 -5.7 acetate kinase compare
DZA65_RS13875 -1.2 -7.9 flagellar filament capping protein FliD compare
DZA65_RS21825 -1.2 -9.2 sugar kinase compare
DZA65_RS21755 -1.2 -5.8 cell division protein FtsX compare
DZA65_RS17985 -1.2 -2.3 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
DZA65_RS19215 -1.2 -4.0 3-isopropylmalate dehydratase small subunit compare
DZA65_RS02245 -1.2 -2.5 transketolase compare
DZA65_RS21090 -1.2 -2.0 tyrosine recombinase XerC compare
DZA65_RS21760 -1.2 -4.5 cell division ATP-binding protein FtsE compare
DZA65_RS19380 -1.2 -8.7 carbamoyl-phosphate synthase large subunit compare
DZA65_RS11915 -1.1 -1.9 ferrous iron transport protein A compare
DZA65_RS17270 -1.1 -9.0 murein transglycosylase D compare
DZA65_RS22195 -1.1 -5.5 ribosome-dependent GTPase TypA compare
DZA65_RS16670 -1.1 -3.8 nucleoside-diphosphate kinase compare
DZA65_RS18020 -1.1 -7.1 RNA polymerase sigma factor RpoS compare
DZA65_RS12020 -1.1 -4.3 ribonuclease toxin immunity protein CdiI compare
DZA65_RS22240 -1.1 -7.0 thiol:disulfide interchange protein DsbA compare
DZA65_RS21610 -1.1 -4.3 envelope stress response regulator transcription factor CpxR compare
DZA65_RS04215 -1.1 -3.1 SsrA-binding protein SmpB compare
DZA65_RS06900 -1.1 -1.0 colicin uptake protein TolR compare
DZA65_RS02505 -1.1 -2.8 peptide chain release factor 3 compare
DZA65_RS01970 -1.1 -7.6 aspartate carbamoyltransferase compare
DZA65_RS18550 -1.1 -6.2 diaminopimelate decarboxylase compare
DZA65_RS10555 -1.1 -1.1 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
DZA65_RS01795 -1.1 -4.5 TonB system transport protein ExbD compare
DZA65_RS01350 -1.1 -2.1 DNA-binding transcriptional regulator Fis compare
DZA65_RS01255 -1.0 -6.9 phosphoribosylamine--glycine ligase compare
DZA65_RS15335 -1.0 -8.5 amidophosphoribosyltransferase compare
DZA65_RS07125 -1.0 -6.8 dTDP-4-dehydrorhamnose reductase compare
DZA65_RS02940 -1.0 -3.7 DedA family protein compare
DZA65_RS19210 -1.0 -6.1 3-isopropylmalate dehydratase large subunit compare
DZA65_RS00970 -1.0 -3.8 twin-arginine translocase subunit TatA compare
DZA65_RS03255 -1.0 -1.9 polyribonucleotide nucleotidyltransferase compare
DZA65_RS10485 -1.0 -4.1 membrane protein compare
DZA65_RS01920 -1.0 -2.8 DUF1311 domain-containing protein compare
DZA65_RS19755 -1.0 -5.0 glycosyltransferase compare
DZA65_RS19175 -1.0 -6.7 catabolite repressor/activator compare
DZA65_RS22145 -1.0 -1.5 DNA-directed RNA polymerase subunit omega compare
DZA65_RS21115 -1.0 -5.2 class I adenylate cyclase compare
DZA65_RS04355 -1.0 -6.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DZA65_RS16710 -1.0 -2.1 iron-sulfur cluster assembly protein IscA compare
DZA65_RS00735 -1.0 -3.9 orotate phosphoribosyltransferase compare
DZA65_RS22735 -1.0 -2.1 hypothetical protein compare
DZA65_RS11120 -1.0 -5.6 mannose-6-phosphate isomerase compare
DZA65_RS19725 -1.0 -7.9 phosphomannomutase/phosphoglucomutase compare
DZA65_RS15625 -0.9 -3.3 membrane protein YpdK compare
DZA65_RS09570 -0.9 -2.6 1-phosphofructokinase compare
DZA65_RS21265 -0.9 -2.6 thioredoxin TrxA compare
DZA65_RS11020 -0.9 -5.8 HTH-type transcriptional regulator CysB compare
DZA65_RS01525 -0.9 -2.8 LPS export ABC transporter periplasmic protein LptC compare
DZA65_RS10965 -0.9 -6.1 anthranilate synthase component 1 compare
DZA65_RS19735 -0.9 -2.6 ABC transporter permease compare
DZA65_RS18320 -0.9 -3.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DZA65_RS22985 -0.9 -1.8 hypothetical protein compare
DZA65_RS06625 -0.9 -4.7 CNNM family magnesium/cobalt transport protein CorC compare
DZA65_RS19205 -0.9 -5.9 3-isopropylmalate dehydrogenase compare
DZA65_RS22640 -0.9 -4.0 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
DZA65_RS01790 -0.9 -6.2 tol-pal system-associated acyl-CoA thioesterase compare
DZA65_RS09375 -0.9 -1.5 type II toxin-antitoxin system RelE/ParE family toxin compare
DZA65_RS19475 -0.9 -3.6 threonine synthase compare
DZA65_RS16045 -0.9 -3.7 polyphosphate kinase 1 compare
DZA65_RS22210 -0.8 -4.8 nitrogen regulation protein NR(I) compare
DZA65_RS13645 -0.8 -3.7 beta-ketoacyl-ACP synthase II compare
DZA65_RS04370 -0.8 -3.7 cysteine synthase A compare
DZA65_RS09515 -0.8 -2.8 hypothetical protein compare
DZA65_RS14055 -0.8 -6.0 chemotaxis response regulator protein-glutamate methylesterase compare
DZA65_RS19730 -0.8 -6.1 GDP-mannose 4,6-dehydratase compare
DZA65_RS22360 -0.8 -6.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DZA65_RS16635 -0.8 -1.3 outer membrane protein assembly factor BamB compare
DZA65_RS05490 -0.8 -5.4 sigma E protease regulator RseP compare
DZA65_RS00835 -0.8 -4.3 murein hydrolase activator EnvC compare
DZA65_RS00095 -0.8 -1.9 AsnC family transcriptional regulator compare
DZA65_RS11550 -0.8 -3.5 fatty acid metabolism transcriptional regulator FadR compare
DZA65_RS20255 -0.8 -4.7 glyoxylate bypass operon transcriptional repressor IclR compare
DZA65_RS00980 -0.8 -5.4 Sec-independent protein translocase subunit TatC compare
DZA65_RS06685 -0.8 -6.0 asparagine synthase B compare
DZA65_RS06885 -0.8 -1.6 cyd operon protein YbgE compare
DZA65_RS21270 -0.8 -5.8 ATP-dependent RNA helicase RhlB compare
DZA65_RS19655 -0.8 -2.0 adenylosuccinate synthase compare
DZA65_RS01180 -0.8 -1.3 DUF1127 domain-containing protein compare
DZA65_RS21080 -0.8 -4.0 DNA helicase II compare
DZA65_RS02410 -0.8 -3.3 hypothetical protein compare
DZA65_RS03625 -0.8 -6.6 polysaccharide biosynthesis protein compare
DZA65_RS02060 -0.8 -2.6 leucyl aminopeptidase compare
DZA65_RS19670 -0.8 -2.2 FtsH protease activity modulator HflK compare
DZA65_RS06985 -0.8 -3.4 galactose-1-phosphate uridylyltransferase compare
DZA65_RS06020 -0.8 -4.1 endopeptidase La compare
DZA65_RS19665 -0.8 -1.9 protease modulator HflC compare
DZA65_RS05855 -0.8 -3.6 tRNA guanosine(34) transglycosylase Tgt compare
DZA65_RS01710 -0.7 -1.3 outer membrane channel protein TolC compare
DZA65_RS21275 -0.7 -4.6 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
DZA65_RS22410 -0.7 -2.5 F0F1 ATP synthase subunit epsilon compare
DZA65_RS13670 -0.7 -3.6 phosphate acyltransferase PlsX compare
DZA65_RS06120 -0.7 -5.4 efflux RND transporter periplasmic adaptor subunit compare
DZA65_RS02945 -0.7 -1.7 transcriptional regulator ExuR compare
DZA65_RS01510 -0.7 -3.3 RNA polymerase factor sigma-54 compare
DZA65_RS05965 -0.7 -2.2 protoheme IX farnesyltransferase compare
DZA65_RS19385 -0.7 -3.8 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DZA65_RS21510 -0.7 -4.9 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
DZA65_RS19720 -0.7 -5.4 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
DZA65_RS21075 -0.7 -2.5 magnesium/cobalt transporter CorA compare
DZA65_RS18600 -0.7 -1.6 DUF1330 domain-containing protein compare
DZA65_RS07065 -0.7 -2.6 dCTP deaminase compare
DZA65_RS05885 -0.7 -3.0 transcriptional regulator NrdR compare
DZA65_RS16640 -0.7 -1.5 YfgM family protein compare
DZA65_RS13700 -0.7 -2.1 ribonuclease E compare
DZA65_RS05500 -0.7 -2.2 molecular chaperone Skp compare
DZA65_RS00360 -0.7 -3.4 MarR family transcriptional regulator compare
DZA65_RS21545 -0.7 -1.4 DUF805 domain-containing protein compare
DZA65_RS22695 -0.7 -3.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DZA65_RS17330 -0.7 -3.0 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DZA65_RS06115 -0.7 -6.0 multidrug efflux RND transporter permease subunit compare
DZA65_RS04630 -0.7 -2.5 ATP-binding protein compare
DZA65_RS20870 -0.7 -1.7 DNA utilization protein GntX compare
DZA65_RS11715 -0.7 -4.4 5-dehydro-4-deoxy-D-glucuronate isomerase compare
DZA65_RS17880 -0.7 -1.6 glycine betaine/L-proline ABC transporter permease ProW compare
DZA65_RS06840 -0.7 -3.2 succinate dehydrogenase iron-sulfur subunit compare
DZA65_RS11145 -0.7 -3.5 ROK family transcriptional regulator compare
DZA65_RS14045 -0.7 -4.0 protein phosphatase CheZ compare
DZA65_RS12310 -0.7 -2.4 amino acid ABC transporter ATP-binding protein compare
DZA65_RS15520 -0.7 -3.4 tRNA-Arg compare
DZA65_RS11920 -0.7 -2.9 type II toxin-antitoxin system RelE/ParE family toxin compare
DZA65_RS18400 -0.7 -1.9 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
DZA65_RS21475 -0.6 -1.2 met regulon transcriptional regulator MetJ compare
DZA65_RS21575 -0.6 -1.5 6-phosphofructokinase compare
DZA65_RS12810 -0.6 -1.4 YnbE family lipoprotein compare
DZA65_RS10950 -0.6 -3.4 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DZA65_RS11590 -0.6 -3.0 septum site-determining protein MinD compare
DZA65_RS01405 -0.6 -5.4 RNase E specificity factor CsrD compare
DZA65_RS08450 -0.6 -1.6 malonate decarboxylase subunit epsilon compare
DZA65_RS19260 -0.6 -1.7 thiamine ABC transporter ATP-binding protein ThiQ compare
DZA65_RS06030 -0.6 -5.4 peptidylprolyl isomerase compare
DZA65_RS05860 -0.6 -1.9 preprotein translocase subunit YajC compare
DZA65_RS05930 -0.6 -3.0 tRNA 4-thiouridine(8) synthase ThiI compare
DZA65_RS15550 -0.6 -3.2 Fe(3+)-siderophore ABC transporter permease compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola ME23 in plant experiments

For plant cv.Upstate across organisms