Experiment setATCH182 for Dickeya dianthicola ME23

Compare to:

Norland

200 most important genes:

  gene name fitness t score description  
DZA65_RS00800 -3.9 -4.6 O-antigen ligase family protein compare
DZA65_RS05310 -3.8 -10.3 thymidylate synthase compare
DZA65_RS16090 -3.8 -2.6 sulfurtransferase TusE compare
DZA65_RS06895 -3.5 -7.9 Tol-Pal system protein TolQ compare
DZA65_RS18160 -3.2 -3.0 glycerate kinase compare
DZA65_RS19290 -2.9 -3.6 hypothetical protein compare
DZA65_RS16610 -2.7 -13.9 IMP dehydrogenase compare
DZA65_RS13750 -2.5 -12.4 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS21420 -2.3 -14.1 glutamate racemase compare
DZA65_RS13710 -2.2 -12.1 dihydroorotase compare
DZA65_RS10585 -2.2 -8.9 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DZA65_RS19655 -2.2 -3.0 adenylosuccinate synthase compare
DZA65_RS03635 -2.1 -7.8 sugar transferase compare
DZA65_RS19215 -2.1 -5.2 3-isopropylmalate dehydratase small subunit compare
DZA65_RS03210 -2.0 -2.9 preprotein translocase subunit SecG compare
DZA65_RS03255 -2.0 -2.9 polyribonucleotide nucleotidyltransferase compare
DZA65_RS19540 -2.0 -6.8 phosphoglycerate dehydrogenase compare
DZA65_RS13755 -2.0 -7.9 glucan biosynthesis protein G compare
DZA65_RS06420 -2.0 -12.0 phosphoribosylformylglycinamidine cyclo-ligase compare
DZA65_RS00790 -2.0 -2.1 glycosyltransferase family 4 protein compare
DZA65_RS02490 -1.9 -8.3 phosphoserine phosphatase compare
DZA65_RS09455 -1.9 -6.1 DUF3413 domain-containing protein compare
DZA65_RS15995 -1.9 -8.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
DZA65_RS10905 -1.9 -7.3 TonB system transport protein TonB compare
DZA65_RS06120 -1.9 -12.3 efflux RND transporter periplasmic adaptor subunit compare
DZA65_RS01260 -1.9 -13.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DZA65_RS20550 -1.9 -3.1 sulfurtransferase complex subunit TusC compare
DZA65_RS06115 -1.8 -14.7 multidrug efflux RND transporter permease subunit compare
DZA65_RS22005 -1.8 -10.3 inorganic phosphate transporter PitA compare
DZA65_RS00735 -1.8 -7.1 orotate phosphoribosyltransferase compare
DZA65_RS01255 -1.8 -11.1 phosphoribosylamine--glycine ligase compare
DZA65_RS06470 -1.8 -7.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DZA65_RS10485 -1.8 -5.4 membrane protein compare
DZA65_RS03230 -1.7 -2.4 transcription termination/antitermination protein NusA compare
DZA65_RS00810 -1.7 -3.7 putative lipopolysaccharide heptosyltransferase III compare
DZA65_RS11925 -1.7 -2.6 DNA-damage-inducible protein J compare
DZA65_RS19380 -1.7 -11.7 carbamoyl-phosphate synthase large subunit compare
DZA65_RS13030 -1.7 -9.0 orotidine-5'-phosphate decarboxylase compare
DZA65_RS12505 -1.7 -5.7 carboxy terminal-processing peptidase compare
DZA65_RS11865 -1.7 -4.0 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS01970 -1.7 -11.5 aspartate carbamoyltransferase compare
DZA65_RS13390 -1.7 -6.9 quinone-dependent dihydroorotate dehydrogenase compare
DZA65_RS22145 -1.6 -2.5 DNA-directed RNA polymerase subunit omega compare
DZA65_RS16830 -1.6 -13.3 phosphoribosylformylglycinamidine synthase compare
DZA65_RS21790 -1.5 -2.0 sulfurtransferase TusA compare
DZA65_RS10915 -1.5 -4.1 septation protein A compare
DZA65_RS19350 -1.5 -4.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
DZA65_RS00795 -1.5 -7.2 glycosyltransferase family 9 protein compare
DZA65_RS15990 -1.5 -3.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
DZA65_RS03670 -1.5 -4.2 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
DZA65_RS11720 -1.5 -6.2 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DZA65_RS18650 -1.5 -4.1 alanine racemase compare
DZA65_RS09910 -1.5 -3.6 thioredoxin-disulfide reductase compare
DZA65_RS01350 -1.4 -2.7 DNA-binding transcriptional regulator Fis compare
DZA65_RS21270 -1.4 -11.5 ATP-dependent RNA helicase RhlB compare
DZA65_RS12020 -1.4 -4.7 ribonuclease toxin immunity protein CdiI compare
DZA65_RS11395 -1.4 -2.9 peptide chain release factor N(5)-glutamine methyltransferase compare
DZA65_RS22195 -1.4 -7.7 ribosome-dependent GTPase TypA compare
DZA65_RS19210 -1.4 -9.6 3-isopropylmalate dehydratase large subunit compare
DZA65_RS18080 -1.4 -3.8 phosphoadenylyl-sulfate reductase compare
DZA65_RS15520 -1.4 -6.9 tRNA-Arg compare
DZA65_RS04355 -1.3 -7.7 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DZA65_RS01510 -1.3 -5.3 RNA polymerase factor sigma-54 compare
DZA65_RS15335 -1.3 -10.2 amidophosphoribosyltransferase compare
DZA65_RS05500 -1.3 -3.1 molecular chaperone Skp compare
DZA65_RS19475 -1.3 -5.0 threonine synthase compare
DZA65_RS16705 -1.2 -4.1 co-chaperone HscB compare
DZA65_RS10810 -1.2 -7.0 formyltetrahydrofolate deformylase compare
DZA65_RS19385 -1.2 -6.7 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DZA65_RS03260 -1.2 -3.7 lipoprotein NlpI compare
DZA65_RS05975 -1.2 -2.2 cytochrome o ubiquinol oxidase subunit III compare
DZA65_RS20555 -1.2 -1.8 sulfurtransferase complex subunit TusD compare
DZA65_RS15370 -1.2 -4.8 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS21275 -1.2 -7.0 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
DZA65_RS01525 -1.1 -2.6 LPS export ABC transporter periplasmic protein LptC compare
DZA65_RS02505 -1.1 -2.6 peptide chain release factor 3 compare
DZA65_RS21615 -1.1 -3.2 envelope stress sensor histidine kinase CpxA compare
DZA65_RS21475 -1.1 -2.1 met regulon transcriptional regulator MetJ compare
DZA65_RS04230 -1.1 -6.2 outer membrane protein assembly factor BamE compare
DZA65_RS19740 -1.1 -5.2 ABC transporter ATP-binding protein compare
DZA65_RS19745 -1.1 -5.6 GDP-L-fucose synthase compare
DZA65_RS06990 -1.1 -8.0 UDP-glucose 4-epimerase GalE compare
DZA65_RS06660 -1.1 -1.7 tRNA-Met compare
DZA65_RS19205 -1.1 -7.4 3-isopropylmalate dehydrogenase compare
DZA65_RS01920 -1.1 -2.5 DUF1311 domain-containing protein compare
DZA65_RS20545 -1.1 -2.3 sulfurtransferase complex subunit TusB compare
DZA65_RS18550 -1.0 -6.8 diaminopimelate decarboxylase compare
DZA65_RS21265 -1.0 -2.7 thioredoxin TrxA compare
DZA65_RS21090 -1.0 -1.8 tyrosine recombinase XerC compare
DZA65_RS11435 -1.0 -3.5 redox-regulated ATPase YchF compare
DZA65_RS21545 -1.0 -2.4 DUF805 domain-containing protein compare
DZA65_RS17255 -1.0 -2.1 ribonuclease HI compare
DZA65_RS18320 -1.0 -4.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DZA65_RS14885 -1.0 -2.5 HyaD/HybD family hydrogenase maturation endopeptidase compare
DZA65_RS10940 -0.9 -5.4 tryptophan synthase subunit alpha compare
DZA65_RS21115 -0.9 -5.4 class I adenylate cyclase compare
DZA65_RS21510 -0.9 -6.4 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
DZA65_RS22210 -0.9 -6.1 nitrogen regulation protein NR(I) compare
DZA65_RS11020 -0.9 -6.1 HTH-type transcriptional regulator CysB compare
DZA65_RS22360 -0.9 -7.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DZA65_RS15285 -0.9 -3.9 phosphate acetyltransferase compare
DZA65_RS01545 -0.9 -3.0 phospholipid ABC transporter ATP-binding protein MlaF compare
DZA65_RS19200 -0.9 -7.5 2-isopropylmalate synthase compare
DZA65_RS06465 -0.9 -6.1 outer membrane protein assembly factor BamC compare
DZA65_RS00740 -0.9 -1.8 nucleoid occlusion factor SlmA compare
DZA65_RS07120 -0.9 -1.6 dTDP-4-dehydrorhamnose 3,5-epimerase compare
DZA65_RS10960 -0.9 -2.3 C26 family cysteine hydrolase domain-containing family compare
DZA65_RS01790 -0.9 -6.6 tol-pal system-associated acyl-CoA thioesterase compare
DZA65_RS06900 -0.9 -0.8 colicin uptake protein TolR compare
DZA65_RS15280 -0.9 -3.7 acetate kinase compare
DZA65_RS17345 -0.9 -6.1 bifunctional chorismate mutase/prephenate dehydratase compare
DZA65_RS21825 -0.9 -7.1 sugar kinase compare
DZA65_RS15515 -0.8 -4.9 phospholipid-binding lipoprotein MlaA compare
DZA65_RS19175 -0.8 -5.1 catabolite repressor/activator compare
DZA65_RS10030 -0.8 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
DZA65_RS22695 -0.8 -4.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DZA65_RS01495 -0.8 -4.2 RNase adapter RapZ compare
DZA65_RS22735 -0.8 -1.8 hypothetical protein compare
DZA65_RS17950 -0.8 -1.6 5S ribosomal RNA compare
DZA65_RS07125 -0.8 -5.1 dTDP-4-dehydrorhamnose reductase compare
DZA65_RS06510 -0.8 -0.8 transcription antiterminator/RNA stability regulator CspE compare
DZA65_RS01560 -0.8 -5.2 phospholipid-binding protein MlaC compare
DZA65_RS00365 -0.8 -5.5 DMT family transporter compare
DZA65_RS11360 -0.8 -3.9 fumarate/nitrate reduction transcriptional regulator Fnr compare
DZA65_RS00845 -0.8 -2.0 protein-export chaperone SecB compare
DZA65_RS01795 -0.8 -2.6 TonB system transport protein ExbD compare
DZA65_RS04700 -0.8 -1.6 transposase compare
DZA65_RS06985 -0.8 -3.5 galactose-1-phosphate uridylyltransferase compare
DZA65_RS20355 -0.8 -3.3 Trk system potassium transporter TrkA compare
DZA65_RS13875 -0.8 -5.2 flagellar filament capping protein FliD compare
DZA65_RS10945 -0.8 -5.1 tryptophan synthase subunit beta compare
DZA65_RS11830 -0.8 -4.0 DNA-binding transcriptional regulator KdgR compare
DZA65_RS22240 -0.7 -4.8 thiol:disulfide interchange protein DsbA compare
DZA65_RS07065 -0.7 -2.0 dCTP deaminase compare
DZA65_RS14030 -0.7 -3.6 flagellar protein FlhE compare
DZA65_RS13085 -0.7 -2.4 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS07180 -0.7 -4.4 NADP-dependent phosphogluconate dehydrogenase compare
DZA65_RS10965 -0.7 -5.0 anthranilate synthase component 1 compare
DZA65_RS21370 -0.7 -5.0 DUF413 domain-containing protein compare
DZA65_RS03470 -0.7 -2.6 membrane protein compare
DZA65_RS10955 -0.7 -3.1 anthranilate phosphoribosyltransferase compare
DZA65_RS04030 -0.7 -2.1 hypothetical protein compare
DZA65_RS10980 -0.7 -2.4 23S rRNA pseudouridine(2605) synthase RluB compare
DZA65_RS04040 -0.7 -1.2 hypothetical protein compare
DZA65_RS09020 -0.7 -3.0 molybdopterin synthase catalytic subunit MoaE compare
DZA65_RS04370 -0.7 -3.1 cysteine synthase A compare
DZA65_RS13240 -0.7 -1.6 LysR family transcriptional regulator compare
DZA65_RS11390 -0.7 -3.6 tetratricopeptide repeat-containing protein compare
DZA65_RS17400 -0.7 -3.3 glutamate--cysteine ligase compare
DZA65_RS03130 -0.7 -3.3 malate dehydrogenase compare
DZA65_RS06745 -0.7 -4.1 alpha-D-glucose phosphate-specific phosphoglucomutase compare
DZA65_RS15555 -0.7 -3.2 iron-enterobactin ABC transporter permease compare
DZA65_RS13570 -0.7 -2.7 glycine zipper 2TM domain-containing protein compare
DZA65_RS22705 -0.7 -1.9 membrane protein insertion efficiency factor YidD compare
DZA65_RS13330 -0.7 -3.4 AI-2E family transporter YdiK compare
DZA65_RS18085 -0.7 -4.5 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
DZA65_RS21585 -0.6 -1.8 Pr2TM family membrane protein compare
DZA65_RS21495 -0.6 -3.4 cell division protein FtsN compare
DZA65_RS18285 -0.6 -2.6 gamma-glutamylcyclotransferase compare
DZA65_RS19665 -0.6 -1.8 protease modulator HflC compare
DZA65_RS08965 -0.6 -4.5 biotin synthase BioB compare
DZA65_RS16635 -0.6 -1.1 outer membrane protein assembly factor BamB compare
DZA65_RS21575 -0.6 -1.6 6-phosphofructokinase compare
DZA65_RS01370 -0.6 -1.5 YhdT family protein compare
DZA65_RS12945 -0.6 -2.2 phage shock protein PspA compare
DZA65_RS07460 -0.6 -2.9 SDR family oxidoreductase compare
DZA65_RS18775 -0.6 -1.0 phage tail protein compare
DZA65_RS18105 -0.6 -2.0 6-carboxytetrahydropterin synthase QueD compare
DZA65_RS20255 -0.6 -3.9 glyoxylate bypass operon transcriptional repressor IclR compare
DZA65_RS17880 -0.6 -1.7 glycine betaine/L-proline ABC transporter permease ProW compare
DZA65_RS16960 -0.6 -2.2 tRNA-Ala compare
DZA65_RS01550 -0.6 -2.5 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
DZA65_RS08595 -0.6 -1.6 type VI secretion system-associated protein TagO compare
DZA65_RS04215 -0.6 -1.8 SsrA-binding protein SmpB compare
DZA65_RS02150 -0.6 -2.0 helix-turn-helix transcriptional regulator compare
DZA65_RS19630 -0.6 -3.7 glutathione synthase compare
DZA65_RS21440 -0.6 -4.5 HTH-type transcriptional repressor FabR compare
DZA65_RS21080 -0.6 -2.9 DNA helicase II compare
DZA65_RS13135 -0.6 -1.5 YnhF family membrane protein compare
DZA65_RS13670 -0.6 -2.8 phosphate acyltransferase PlsX compare
DZA65_RS10825 -0.6 -3.1 two-component system response regulator RssB compare
DZA65_RS05285 -0.6 -1.7 DNA mismatch repair endonuclease MutH compare
DZA65_RS06685 -0.6 -4.6 asparagine synthase B compare
DZA65_RS00710 -0.6 -2.2 L-Ala-D/L-Glu epimerase compare
DZA65_RS12310 -0.6 -2.3 amino acid ABC transporter ATP-binding protein compare
DZA65_RS18000 -0.6 -4.0 MetQ/NlpA family lipoprotein compare
DZA65_RS06065 -0.6 -2.5 P-II family nitrogen regulator compare
DZA65_RS15550 -0.6 -3.2 Fe(3+)-siderophore ABC transporter permease compare
DZA65_RS11120 -0.6 -3.6 mannose-6-phosphate isomerase compare
DZA65_RS13880 -0.6 -2.6 flagellar export chaperone FliS compare
DZA65_RS11715 -0.6 -3.9 5-dehydro-4-deoxy-D-glucuronate isomerase compare
DZA65_RS21800 -0.6 -0.9 DcrB family lipoprotein compare
DZA65_RS21235 -0.6 -2.6 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
DZA65_RS19375 -0.6 -1.9 LysE family transporter compare
DZA65_RS06335 -0.6 -1.6 DUF1778 domain-containing protein compare
DZA65_RS19755 -0.6 -3.3 glycosyltransferase compare
DZA65_RS05855 -0.5 -3.1 tRNA guanosine(34) transglycosylase Tgt compare
DZA65_RS19345 -0.5 -3.7 Co2+/Mg2+ efflux protein ApaG compare
DZA65_RS16925 -0.5 -0.8 anti-sigma-E factor RseA compare
DZA65_RS20220 -0.5 -3.5 glucose-6-phosphate isomerase compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola ME23 in plant experiments

For plant cv.Norland across organisms