Experiment setATCH180 for Dickeya dianthicola ME23

Compare to:

Norland

200 most important genes:

  gene name fitness t score description  
DZA65_RS05310 -3.4 -8.4 thymidylate synthase compare
DZA65_RS06895 -3.4 -7.9 Tol-Pal system protein TolQ compare
DZA65_RS16090 -3.3 -2.8 sulfurtransferase TusE compare
DZA65_RS00800 -3.0 -6.0 O-antigen ligase family protein compare
DZA65_RS16610 -2.7 -14.1 IMP dehydrogenase compare
DZA65_RS10585 -2.5 -6.0 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DZA65_RS00790 -2.4 -2.7 glycosyltransferase family 4 protein compare
DZA65_RS15990 -2.4 -4.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
DZA65_RS11865 -2.3 -4.5 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS21420 -2.3 -15.6 glutamate racemase compare
DZA65_RS11720 -2.3 -7.9 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DZA65_RS01350 -2.2 -3.2 DNA-binding transcriptional regulator Fis compare
DZA65_RS02490 -2.2 -9.1 phosphoserine phosphatase compare
DZA65_RS20550 -2.2 -3.5 sulfurtransferase complex subunit TusC compare
DZA65_RS10915 -2.2 -6.5 septation protein A compare
DZA65_RS13750 -2.2 -10.9 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS10905 -2.1 -7.2 TonB system transport protein TonB compare
DZA65_RS01260 -2.1 -12.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DZA65_RS19540 -2.0 -7.6 phosphoglycerate dehydrogenase compare
DZA65_RS18650 -2.0 -4.8 alanine racemase compare
DZA65_RS19290 -1.9 -3.4 hypothetical protein compare
DZA65_RS13710 -1.8 -10.8 dihydroorotase compare
DZA65_RS13755 -1.8 -7.5 glucan biosynthesis protein G compare
DZA65_RS12505 -1.8 -6.2 carboxy terminal-processing peptidase compare
DZA65_RS13390 -1.8 -7.8 quinone-dependent dihydroorotate dehydrogenase compare
DZA65_RS22195 -1.7 -9.7 ribosome-dependent GTPase TypA compare
DZA65_RS22735 -1.7 -2.8 hypothetical protein compare
DZA65_RS19380 -1.7 -11.9 carbamoyl-phosphate synthase large subunit compare
DZA65_RS21790 -1.6 -2.1 sulfurtransferase TusA compare
DZA65_RS06420 -1.6 -9.2 phosphoribosylformylglycinamidine cyclo-ligase compare
DZA65_RS19655 -1.6 -3.3 adenylosuccinate synthase compare
DZA65_RS18160 -1.6 -1.8 glycerate kinase compare
DZA65_RS06470 -1.6 -5.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DZA65_RS09455 -1.6 -5.2 DUF3413 domain-containing protein compare
DZA65_RS01255 -1.5 -8.6 phosphoribosylamine--glycine ligase compare
DZA65_RS16830 -1.5 -12.1 phosphoribosylformylglycinamidine synthase compare
DZA65_RS00735 -1.5 -5.6 orotate phosphoribosyltransferase compare
DZA65_RS03260 -1.5 -4.9 lipoprotein NlpI compare
DZA65_RS00740 -1.4 -2.8 nucleoid occlusion factor SlmA compare
DZA65_RS01970 -1.4 -9.5 aspartate carbamoyltransferase compare
DZA65_RS03670 -1.4 -5.1 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
DZA65_RS13030 -1.4 -7.2 orotidine-5'-phosphate decarboxylase compare
DZA65_RS10485 -1.4 -4.6 membrane protein compare
DZA65_RS12020 -1.4 -5.1 ribonuclease toxin immunity protein CdiI compare
DZA65_RS20545 -1.4 -2.8 sulfurtransferase complex subunit TusB compare
DZA65_RS11395 -1.4 -2.8 peptide chain release factor N(5)-glutamine methyltransferase compare
DZA65_RS11915 -1.3 -1.6 ferrous iron transport protein A compare
DZA65_RS10810 -1.3 -7.4 formyltetrahydrofolate deformylase compare
DZA65_RS03255 -1.3 -2.4 polyribonucleotide nucleotidyltransferase compare
DZA65_RS19385 -1.3 -8.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DZA65_RS02300 -1.3 -2.3 type-1Ba cytolytic delta-endotoxin compare
DZA65_RS03410 -1.3 -2.3 tRNA-Leu compare
DZA65_RS18975 -1.3 -1.5 helix-turn-helix transcriptional regulator compare
DZA65_RS19210 -1.3 -8.4 3-isopropylmalate dehydratase large subunit compare
DZA65_RS07120 -1.2 -2.5 dTDP-4-dehydrorhamnose 3,5-epimerase compare
DZA65_RS15335 -1.2 -9.7 amidophosphoribosyltransferase compare
DZA65_RS03635 -1.2 -4.2 sugar transferase compare
DZA65_RS12275 -1.2 -2.3 hypothetical protein compare
DZA65_RS13330 -1.2 -5.9 AI-2E family transporter YdiK compare
DZA65_RS17345 -1.2 -7.8 bifunctional chorismate mutase/prephenate dehydratase compare
DZA65_RS22005 -1.2 -6.7 inorganic phosphate transporter PitA compare
DZA65_RS04230 -1.2 -6.1 outer membrane protein assembly factor BamE compare
DZA65_RS15995 -1.2 -5.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
DZA65_RS16925 -1.1 -2.2 anti-sigma-E factor RseA compare
DZA65_RS00365 -1.1 -6.0 DMT family transporter compare
DZA65_RS21075 -1.1 -3.0 magnesium/cobalt transporter CorA compare
DZA65_RS21265 -1.1 -2.4 thioredoxin TrxA compare
DZA65_RS18020 -1.1 -6.3 RNA polymerase sigma factor RpoS compare
DZA65_RS20555 -1.1 -2.0 sulfurtransferase complex subunit TusD compare
DZA65_RS15280 -1.1 -4.9 acetate kinase compare
DZA65_RS11435 -1.1 -2.8 redox-regulated ATPase YchF compare
DZA65_RS19735 -1.1 -3.9 ABC transporter permease compare
DZA65_RS19205 -1.1 -7.3 3-isopropylmalate dehydrogenase compare
DZA65_RS22240 -1.0 -6.4 thiol:disulfide interchange protein DsbA compare
DZA65_RS11655 -1.0 -7.8 TerC family protein compare
DZA65_RS20805 -1.0 -0.9 intracellular growth attenuator family protein compare
DZA65_RS09015 -1.0 -1.4 molybdopterin synthase sulfur carrier subunit compare
DZA65_RS15370 -1.0 -4.0 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS00810 -1.0 -2.9 putative lipopolysaccharide heptosyltransferase III compare
DZA65_RS04355 -1.0 -6.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DZA65_RS19740 -1.0 -5.2 ABC transporter ATP-binding protein compare
DZA65_RS06115 -1.0 -8.9 multidrug efflux RND transporter permease subunit compare
DZA65_RS21270 -1.0 -8.1 ATP-dependent RNA helicase RhlB compare
DZA65_RS15520 -1.0 -4.8 tRNA-Arg compare
DZA65_RS05500 -1.0 -2.6 molecular chaperone Skp compare
DZA65_RS01510 -1.0 -4.4 RNA polymerase factor sigma-54 compare
DZA65_RS06020 -1.0 -5.4 endopeptidase La compare
DZA65_RS06900 -1.0 -0.9 colicin uptake protein TolR compare
DZA65_RS11120 -1.0 -6.1 mannose-6-phosphate isomerase compare
DZA65_RS04700 -1.0 -1.8 transposase compare
DZA65_RS06990 -1.0 -6.8 UDP-glucose 4-epimerase GalE compare
DZA65_RS15555 -1.0 -4.0 iron-enterobactin ABC transporter permease compare
DZA65_RS19665 -1.0 -2.7 protease modulator HflC compare
DZA65_RS07125 -1.0 -6.4 dTDP-4-dehydrorhamnose reductase compare
DZA65_RS18550 -0.9 -5.8 diaminopimelate decarboxylase compare
DZA65_RS00795 -0.9 -4.8 glycosyltransferase family 9 protein compare
DZA65_RS01790 -0.9 -6.8 tol-pal system-associated acyl-CoA thioesterase compare
DZA65_RS19175 -0.9 -6.2 catabolite repressor/activator compare
DZA65_RS04215 -0.9 -3.1 SsrA-binding protein SmpB compare
DZA65_RS09910 -0.9 -3.1 thioredoxin-disulfide reductase compare
DZA65_RS19745 -0.9 -5.2 GDP-L-fucose synthase compare
DZA65_RS22695 -0.9 -5.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DZA65_RS05295 -0.9 -1.4 RNA pyrophosphohydrolase compare
DZA65_RS13670 -0.9 -4.3 phosphate acyltransferase PlsX compare
DZA65_RS19215 -0.8 -2.8 3-isopropylmalate dehydratase small subunit compare
DZA65_RS11930 -0.8 -1.3 type I toxin-antitoxin system SymE family toxin compare
DZA65_RS06860 -0.8 -4.0 succinate--CoA ligase subunit alpha compare
DZA65_RS12230 -0.8 -2.1 HrpP protein compare
DZA65_RS22360 -0.8 -6.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DZA65_RS20005 -0.8 -1.3 helix-turn-helix transcriptional regulator compare
DZA65_RS21825 -0.8 -6.2 sugar kinase compare
DZA65_RS06120 -0.8 -5.9 efflux RND transporter periplasmic adaptor subunit compare
DZA65_RS10555 -0.8 -0.8 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
DZA65_RS15515 -0.8 -4.3 phospholipid-binding lipoprotein MlaA compare
DZA65_RS02245 -0.8 -1.4 transketolase compare
DZA65_RS05985 -0.8 -3.2 cytochrome o ubiquinol oxidase subunit II compare
DZA65_RS07065 -0.8 -3.2 dCTP deaminase compare
DZA65_RS15580 -0.8 -4.4 enterochelin esterase compare
DZA65_RS05975 -0.8 -1.5 cytochrome o ubiquinol oxidase subunit III compare
DZA65_RS00175 -0.8 -3.0 ABC transporter permease compare
DZA65_RS22845 -0.8 -2.4 hypothetical protein compare
DZA65_RS19520 -0.8 -3.0 trp operon repressor compare
DZA65_RS01795 -0.8 -2.7 TonB system transport protein ExbD compare
DZA65_RS16670 -0.8 -2.9 nucleoside-diphosphate kinase compare
DZA65_RS14515 -0.8 -1.1 transposase compare
DZA65_RS05840 -0.8 -0.8 peroxiredoxin C compare
DZA65_RS18320 -0.8 -3.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DZA65_RS13085 -0.8 -2.2 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS10940 -0.7 -4.4 tryptophan synthase subunit alpha compare
DZA65_RS22210 -0.7 -4.5 nitrogen regulation protein NR(I) compare
DZA65_RS03230 -0.7 -1.0 transcription termination/antitermination protein NusA compare
DZA65_RS21090 -0.7 -1.0 tyrosine recombinase XerC compare
DZA65_RS15200 -0.7 -1.5 hypothetical protein compare
DZA65_RS01545 -0.7 -2.5 phospholipid ABC transporter ATP-binding protein MlaF compare
DZA65_RS18920 -0.7 -2.6 D-threonate 4-phosphate dehydrogenase compare
DZA65_RS00360 -0.7 -3.9 MarR family transcriptional regulator compare
DZA65_RS03625 -0.7 -6.1 polysaccharide biosynthesis protein compare
DZA65_RS19200 -0.7 -6.0 2-isopropylmalate synthase compare
DZA65_RS11020 -0.7 -4.1 HTH-type transcriptional regulator CysB compare
DZA65_RS12995 -0.7 -3.9 exoribonuclease II compare
DZA65_RS05240 -0.7 -2.9 oxidative damage protection protein compare
DZA65_RS21115 -0.7 -3.9 class I adenylate cyclase compare
DZA65_RS08535 -0.7 -1.6 amidohydrolase compare
DZA65_RS07180 -0.7 -4.3 NADP-dependent phosphogluconate dehydrogenase compare
DZA65_RS06565 -0.7 -1.6 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
DZA65_RS13880 -0.7 -2.7 flagellar export chaperone FliS compare
DZA65_RS01615 -0.7 -4.5 stringent starvation protein A compare
DZA65_RS11830 -0.7 -3.6 DNA-binding transcriptional regulator KdgR compare
DZA65_RS06660 -0.7 -1.7 tRNA-Met compare
DZA65_RS20355 -0.7 -2.8 Trk system potassium transporter TrkA compare
DZA65_RS13875 -0.7 -4.6 flagellar filament capping protein FliD compare
DZA65_RS11715 -0.7 -4.3 5-dehydro-4-deoxy-D-glucuronate isomerase compare
DZA65_RS19755 -0.7 -4.1 glycosyltransferase compare
DZA65_RS09520 -0.7 -2.4 microcin C ABC transporter ATP-binding protein YejF compare
DZA65_RS01525 -0.7 -1.8 LPS export ABC transporter periplasmic protein LptC compare
DZA65_RS19725 -0.7 -5.6 phosphomannomutase/phosphoglucomutase compare
DZA65_RS22145 -0.7 -1.4 DNA-directed RNA polymerase subunit omega compare
DZA65_RS01585 -0.7 -4.4 serine endoprotease DegQ compare
DZA65_RS10945 -0.6 -4.2 tryptophan synthase subunit beta compare
DZA65_RS10365 -0.6 -2.3 DUF1330 domain-containing protein compare
DZA65_RS18080 -0.6 -2.1 phosphoadenylyl-sulfate reductase compare
DZA65_RS19720 -0.6 -4.8 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
DZA65_RS15215 -0.6 -3.0 hypothetical protein compare
DZA65_RS04370 -0.6 -2.7 cysteine synthase A compare
DZA65_RS20520 -0.6 -2.5 bacterioferritin-associated ferredoxin compare
DZA65_RS01550 -0.6 -2.5 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
DZA65_RS21445 -0.6 -2.2 Si-specific NAD(P)(+) transhydrogenase compare
DZA65_RS01405 -0.6 -5.3 RNase E specificity factor CsrD compare
DZA65_RS00900 -0.6 -2.6 ATP-binding cassette domain-containing protein compare
DZA65_RS06625 -0.6 -3.3 CNNM family magnesium/cobalt transport protein CorC compare
DZA65_RS15550 -0.6 -3.1 Fe(3+)-siderophore ABC transporter permease compare
DZA65_RS10965 -0.6 -4.1 anthranilate synthase component 1 compare
DZA65_RS16910 -0.6 -3.5 elongation factor 4 compare
DZA65_RS17015 -0.6 -1.1 PTS lactose/cellobiose transporter subunit IIA compare
DZA65_RS03775 -0.6 -1.7 MarR family transcriptional regulator compare
DZA65_RS06985 -0.6 -2.5 galactose-1-phosphate uridylyltransferase compare
DZA65_RS06685 -0.6 -4.7 asparagine synthase B compare
DZA65_RS17035 -0.6 -1.8 helix-turn-helix transcriptional regulator compare
DZA65_RS02945 -0.6 -1.1 transcriptional regulator ExuR compare
DZA65_RS19750 -0.6 -3.5 hypothetical protein compare
DZA65_RS15025 -0.6 -2.5 DUF2313 domain-containing protein compare
DZA65_RS15540 -0.6 -3.9 Fe2+-enterobactin ABC transporter substrate-binding protein compare
DZA65_RS14145 -0.6 -1.8 hypothetical protein compare
DZA65_RS02940 -0.6 -2.6 DedA family protein compare
DZA65_RS20130 -0.6 -2.3 ATP-binding cassette domain-containing protein compare
DZA65_RS21170 -0.6 -3.1 SnoaL-like domain-containing protein compare
DZA65_RS10950 -0.6 -3.9 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DZA65_RS15060 -0.6 -2.1 hypothetical protein compare
DZA65_RS11920 -0.6 -3.0 type II toxin-antitoxin system RelE/ParE family toxin compare
DZA65_RS21510 -0.6 -4.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
DZA65_RS01530 -0.6 -4.3 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DZA65_RS21275 -0.6 -3.9 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
DZA65_RS10955 -0.6 -1.9 anthranilate phosphoribosyltransferase compare
DZA65_RS12810 -0.6 -0.8 YnbE family lipoprotein compare
DZA65_RS19350 -0.6 -1.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
DZA65_RS03210 -0.6 -1.0 preprotein translocase subunit SecG compare
DZA65_RS12180 -0.6 -1.5 hypothetical protein compare
DZA65_RS01495 -0.6 -3.4 RNase adapter RapZ compare
DZA65_RS05325 -0.6 -1.7 YgdB family protein compare
DZA65_RS13435 -0.6 -4.1 porin compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola ME23 in plant experiments

For plant cv.Norland across organisms