Experiment setATCH178 for Dickeya dianthicola ME23

Compare to:

Norland

200 most important genes:

  gene name fitness t score description  
DZA65_RS06900 -4.1 -3.9 colicin uptake protein TolR compare
DZA65_RS05310 -4.1 -9.0 thymidylate synthase compare
DZA65_RS21790 -2.8 -3.7 sulfurtransferase TusA compare
DZA65_RS18650 -2.7 -5.5 alanine racemase compare
DZA65_RS16610 -2.5 -12.1 IMP dehydrogenase compare
DZA65_RS13750 -2.4 -13.0 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS15990 -2.4 -3.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
DZA65_RS20550 -2.3 -3.7 sulfurtransferase complex subunit TusC compare
DZA65_RS21420 -2.3 -13.7 glutamate racemase compare
DZA65_RS03210 -2.2 -2.8 preprotein translocase subunit SecG compare
DZA65_RS00800 -2.2 -4.2 O-antigen ligase family protein compare
DZA65_RS10585 -2.2 -7.9 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DZA65_RS06895 -2.2 -5.5 Tol-Pal system protein TolQ compare
DZA65_RS02490 -2.2 -9.2 phosphoserine phosphatase compare
DZA65_RS19290 -2.2 -2.5 hypothetical protein compare
DZA65_RS11865 -2.1 -4.8 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS21090 -2.1 -2.7 tyrosine recombinase XerC compare
DZA65_RS10915 -2.0 -7.8 septation protein A compare
DZA65_RS13755 -2.0 -8.5 glucan biosynthesis protein G compare
DZA65_RS10905 -2.0 -7.1 TonB system transport protein TonB compare
DZA65_RS13710 -1.9 -11.7 dihydroorotase compare
DZA65_RS01260 -1.8 -11.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DZA65_RS06510 -1.8 -2.1 transcription antiterminator/RNA stability regulator CspE compare
DZA65_RS12505 -1.8 -6.3 carboxy terminal-processing peptidase compare
DZA65_RS13390 -1.8 -9.3 quinone-dependent dihydroorotate dehydrogenase compare
DZA65_RS00735 -1.7 -6.9 orotate phosphoribosyltransferase compare
DZA65_RS16830 -1.7 -14.1 phosphoribosylformylglycinamidine synthase compare
DZA65_RS03260 -1.7 -6.2 lipoprotein NlpI compare
DZA65_RS06470 -1.7 -6.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DZA65_RS03635 -1.7 -7.1 sugar transferase compare
DZA65_RS06420 -1.6 -9.2 phosphoribosylformylglycinamidine cyclo-ligase compare
DZA65_RS07120 -1.6 -2.5 dTDP-4-dehydrorhamnose 3,5-epimerase compare
DZA65_RS05500 -1.6 -4.2 molecular chaperone Skp compare
DZA65_RS15995 -1.6 -7.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
DZA65_RS19380 -1.5 -11.1 carbamoyl-phosphate synthase large subunit compare
DZA65_RS09910 -1.5 -4.1 thioredoxin-disulfide reductase compare
DZA65_RS05975 -1.5 -2.4 cytochrome o ubiquinol oxidase subunit III compare
DZA65_RS11720 -1.5 -5.9 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DZA65_RS19540 -1.5 -6.5 phosphoglycerate dehydrogenase compare
DZA65_RS22210 -1.4 -8.1 nitrogen regulation protein NR(I) compare
DZA65_RS01255 -1.4 -8.2 phosphoribosylamine--glycine ligase compare
DZA65_RS01350 -1.4 -2.5 DNA-binding transcriptional regulator Fis compare
DZA65_RS01970 -1.4 -9.4 aspartate carbamoyltransferase compare
DZA65_RS10485 -1.4 -5.0 membrane protein compare
DZA65_RS11395 -1.4 -2.6 peptide chain release factor N(5)-glutamine methyltransferase compare
DZA65_RS20555 -1.4 -2.2 sulfurtransferase complex subunit TusD compare
DZA65_RS02945 -1.4 -2.6 transcriptional regulator ExuR compare
DZA65_RS13030 -1.4 -6.4 orotidine-5'-phosphate decarboxylase compare
DZA65_RS18160 -1.3 -2.1 glycerate kinase compare
DZA65_RS22195 -1.3 -7.0 ribosome-dependent GTPase TypA compare
DZA65_RS10810 -1.3 -7.4 formyltetrahydrofolate deformylase compare
DZA65_RS00365 -1.3 -6.5 DMT family transporter compare
DZA65_RS15520 -1.3 -6.9 tRNA-Arg compare
DZA65_RS15335 -1.3 -10.2 amidophosphoribosyltransferase compare
DZA65_RS03670 -1.3 -3.7 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
DZA65_RS18550 -1.3 -7.5 diaminopimelate decarboxylase compare
DZA65_RS22005 -1.3 -6.7 inorganic phosphate transporter PitA compare
DZA65_RS21270 -1.3 -9.7 ATP-dependent RNA helicase RhlB compare
DZA65_RS19350 -1.2 -3.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
DZA65_RS04230 -1.2 -6.7 outer membrane protein assembly factor BamE compare
DZA65_RS14415 -1.2 -1.2 IS4 family transposase compare
DZA65_RS16370 -1.2 -1.8 hypothetical protein compare
DZA65_RS15370 -1.2 -5.0 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS00790 -1.2 -1.1 glycosyltransferase family 4 protein compare
DZA65_RS20005 -1.2 -2.4 helix-turn-helix transcriptional regulator compare
DZA65_RS10555 -1.2 -1.0 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
DZA65_RS06990 -1.2 -8.4 UDP-glucose 4-epimerase GalE compare
DZA65_RS05860 -1.2 -3.1 preprotein translocase subunit YajC compare
DZA65_RS09990 -1.2 -2.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
DZA65_RS12020 -1.2 -3.4 ribonuclease toxin immunity protein CdiI compare
DZA65_RS13040 -1.2 -3.1 LapA family protein compare
DZA65_RS13645 -1.1 -4.5 beta-ketoacyl-ACP synthase II compare
DZA65_RS22145 -1.1 -1.8 DNA-directed RNA polymerase subunit omega compare
DZA65_RS14310 -1.1 -2.0 LysR family transcriptional regulator compare
DZA65_RS01795 -1.1 -3.8 TonB system transport protein ExbD compare
DZA65_RS06025 -1.1 -1.9 DNA-binding protein HU-beta compare
DZA65_RS12685 -1.1 -1.8 hypothetical protein compare
DZA65_RS21265 -1.1 -2.4 thioredoxin TrxA compare
DZA65_RS07125 -1.1 -6.7 dTDP-4-dehydrorhamnose reductase compare
DZA65_RS19385 -1.1 -5.9 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DZA65_RS02505 -1.1 -2.2 peptide chain release factor 3 compare
DZA65_RS04355 -1.1 -7.3 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DZA65_RS00795 -1.1 -5.6 glycosyltransferase family 9 protein compare
DZA65_RS21275 -1.0 -6.5 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
DZA65_RS16960 -1.0 -2.9 tRNA-Ala compare
DZA65_RS13485 -1.0 -4.1 endopeptidase compare
DZA65_RS01510 -1.0 -4.3 RNA polymerase factor sigma-54 compare
DZA65_RS16715 -1.0 -1.1 Fe-S cluster assembly scaffold IscU compare
DZA65_RS03255 -1.0 -1.8 polyribonucleotide nucleotidyltransferase compare
DZA65_RS20875 -1.0 -2.3 Fe-S biogenesis protein NfuA compare
DZA65_RS21825 -1.0 -7.6 sugar kinase compare
DZA65_RS19210 -1.0 -6.2 3-isopropylmalate dehydratase large subunit compare
DZA65_RS01370 -1.0 -1.7 YhdT family protein compare
DZA65_RS11020 -0.9 -5.2 HTH-type transcriptional regulator CysB compare
DZA65_RS20545 -0.9 -2.0 sulfurtransferase complex subunit TusB compare
DZA65_RS17345 -0.9 -5.8 bifunctional chorismate mutase/prephenate dehydratase compare
DZA65_RS01790 -0.9 -6.3 tol-pal system-associated acyl-CoA thioesterase compare
DZA65_RS16635 -0.9 -1.6 outer membrane protein assembly factor BamB compare
DZA65_RS00095 -0.9 -1.9 AsnC family transcriptional regulator compare
DZA65_RS07180 -0.9 -5.2 NADP-dependent phosphogluconate dehydrogenase compare
DZA65_RS06660 -0.9 -2.0 tRNA-Met compare
DZA65_RS21495 -0.9 -4.3 cell division protein FtsN compare
DZA65_RS13880 -0.9 -4.1 flagellar export chaperone FliS compare
DZA65_RS00740 -0.9 -1.9 nucleoid occlusion factor SlmA compare
DZA65_RS21115 -0.9 -5.0 class I adenylate cyclase compare
DZA65_RS19655 -0.9 -1.4 adenylosuccinate synthase compare
DZA65_RS19745 -0.9 -5.3 GDP-L-fucose synthase compare
DZA65_RS13670 -0.8 -3.8 phosphate acyltransferase PlsX compare
DZA65_RS19215 -0.8 -3.1 3-isopropylmalate dehydratase small subunit compare
DZA65_RS13330 -0.8 -4.8 AI-2E family transporter YdiK compare
DZA65_RS17985 -0.8 -2.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
DZA65_RS13085 -0.8 -2.9 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS16705 -0.8 -3.0 co-chaperone HscB compare
DZA65_RS16670 -0.8 -2.7 nucleoside-diphosphate kinase compare
DZA65_RS18600 -0.8 -1.7 DUF1330 domain-containing protein compare
DZA65_RS22360 -0.8 -6.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DZA65_RS09240 -0.8 -1.4 biotin carboxyl carrier domain-containing protein compare
DZA65_RS01920 -0.8 -1.9 DUF1311 domain-containing protein compare
DZA65_RS15580 -0.8 -4.1 enterochelin esterase compare
DZA65_RS18915 -0.8 -3.6 DeoR/GlpR transcriptional regulator compare
DZA65_RS18320 -0.8 -3.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DZA65_RS07065 -0.8 -2.7 dCTP deaminase compare
DZA65_RS05985 -0.8 -2.9 cytochrome o ubiquinol oxidase subunit II compare
DZA65_RS05445 -0.8 -4.8 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
DZA65_RS11175 -0.8 -3.5 DUF2384 domain-containing protein compare
DZA65_RS15555 -0.8 -4.1 iron-enterobactin ABC transporter permease compare
DZA65_RS22735 -0.8 -1.5 hypothetical protein compare
DZA65_RS01205 -0.8 -2.0 HesA/MoeB/ThiF family protein compare
DZA65_RS12945 -0.8 -3.0 phage shock protein PspA compare
DZA65_RS09455 -0.8 -3.0 DUF3413 domain-containing protein compare
DZA65_RS02465 -0.8 -1.8 cell division protein ZapA compare
DZA65_RS11360 -0.8 -3.9 fumarate/nitrate reduction transcriptional regulator Fnr compare
DZA65_RS19200 -0.7 -6.3 2-isopropylmalate synthase compare
DZA65_RS15540 -0.7 -4.8 Fe2+-enterobactin ABC transporter substrate-binding protein compare
DZA65_RS15380 -0.7 -4.3 4-phosphoerythronate dehydrogenase PdxB compare
DZA65_RS19205 -0.7 -5.4 3-isopropylmalate dehydrogenase compare
DZA65_RS03230 -0.7 -1.0 transcription termination/antitermination protein NusA compare
DZA65_RS15550 -0.7 -3.4 Fe(3+)-siderophore ABC transporter permease compare
DZA65_RS02300 -0.7 -1.3 type-1Ba cytolytic delta-endotoxin compare
DZA65_RS16885 -0.7 -3.5 pyridoxine 5'-phosphate synthase compare
DZA65_RS19160 -0.7 -2.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DZA65_RS19740 -0.7 -3.9 ABC transporter ATP-binding protein compare
DZA65_RS15280 -0.7 -3.0 acetate kinase compare
DZA65_RS21615 -0.7 -2.2 envelope stress sensor histidine kinase CpxA compare
DZA65_RS06185 -0.7 -3.9 Kef family K(+) transporter compare
DZA65_RS18270 -0.7 -2.1 glycerol-3-phosphate 1-O-acyltransferase PlsY compare
DZA65_RS17835 -0.7 -2.1 oxalurate catabolism protein HpxX compare
DZA65_RS22695 -0.7 -3.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DZA65_RS11925 -0.7 -1.5 DNA-damage-inducible protein J compare
DZA65_RS10720 -0.7 -1.8 GlsB/YeaQ/YmgE family stress response membrane protein compare
DZA65_RS16265 -0.7 -1.4 hypothetical protein compare
DZA65_RS10045 -0.7 -3.4 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
DZA65_RS20355 -0.7 -2.9 Trk system potassium transporter TrkA compare
DZA65_RS13875 -0.7 -4.8 flagellar filament capping protein FliD compare
DZA65_RS06020 -0.7 -3.8 endopeptidase La compare
DZA65_RS19475 -0.7 -2.8 threonine synthase compare
DZA65_RS21080 -0.7 -3.7 DNA helicase II compare
DZA65_RS11390 -0.6 -2.8 tetratricopeptide repeat-containing protein compare
DZA65_RS07365 -0.6 -4.2 SDR family oxidoreductase compare
DZA65_RS04215 -0.6 -2.2 SsrA-binding protein SmpB compare
DZA65_RS19175 -0.6 -3.9 catabolite repressor/activator compare
DZA65_RS01545 -0.6 -2.4 phospholipid ABC transporter ATP-binding protein MlaF compare
DZA65_RS21510 -0.6 -4.4 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
DZA65_RS11435 -0.6 -2.0 redox-regulated ATPase YchF compare
DZA65_RS06120 -0.6 -4.7 efflux RND transporter periplasmic adaptor subunit compare
DZA65_RS04945 -0.6 -2.9 prepilin peptidase compare
DZA65_RS21575 -0.6 -1.7 6-phosphofructokinase compare
DZA65_RS06820 -0.6 -1.4 citrate synthase compare
DZA65_RS16090 -0.6 -0.8 sulfurtransferase TusE compare
DZA65_RS21475 -0.6 -1.3 met regulon transcriptional regulator MetJ compare
DZA65_RS19520 -0.6 -1.8 trp operon repressor compare
DZA65_RS06115 -0.6 -5.6 multidrug efflux RND transporter permease subunit compare
DZA65_RS17595 -0.6 -2.3 hypothetical protein compare
DZA65_RS17145 -0.6 -2.5 polynucleotide adenylyltransferase PcnB compare
DZA65_RS18080 -0.6 -1.8 phosphoadenylyl-sulfate reductase compare
DZA65_RS15345 -0.6 -4.2 cell division protein DedD compare
DZA65_RS08120 -0.6 -2.8 iron ABC transporter permease compare
DZA65_RS16710 -0.6 -1.2 iron-sulfur cluster assembly protein IscA compare
DZA65_RS11715 -0.6 -4.1 5-dehydro-4-deoxy-D-glucuronate isomerase compare
DZA65_RS01530 -0.6 -4.6 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DZA65_RS00970 -0.6 -1.9 twin-arginine translocase subunit TatA compare
DZA65_RS16910 -0.6 -3.4 elongation factor 4 compare
DZA65_RS14245 -0.6 -1.9 acyl carrier protein compare
DZA65_RS19195 -0.6 -2.2 leu operon leader peptide compare
DZA65_RS13385 -0.6 -1.7 cell division protein ZapC compare
DZA65_RS17390 -0.6 -4.8 inner membrane protein YpjD compare
DZA65_RS00980 -0.6 -3.9 Sec-independent protein translocase subunit TatC compare
DZA65_RS05490 -0.6 -3.9 sigma E protease regulator RseP compare
DZA65_RS13595 -0.6 -1.9 penicillin-binding protein activator LpoB compare
DZA65_RS15060 -0.6 -1.9 hypothetical protein compare
DZA65_RS01560 -0.6 -3.4 phospholipid-binding protein MlaC compare
DZA65_RS05285 -0.6 -1.4 DNA mismatch repair endonuclease MutH compare
DZA65_RS11655 -0.6 -3.9 TerC family protein compare
DZA65_RS16945 -0.6 -4.1 ATP-dependent RNA helicase SrmB compare
DZA65_RS12660 -0.6 -1.5 phage tail assembly protein compare
DZA65_RS06335 -0.6 -1.8 DUF1778 domain-containing protein compare
DZA65_RS22635 -0.6 -1.6 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
DZA65_RS05620 -0.6 -1.9 GNAT family N-acetyltransferase compare
DZA65_RS16925 -0.6 -1.1 anti-sigma-E factor RseA compare
DZA65_RS00350 -0.6 -1.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola ME23 in plant experiments

For plant cv.Norland across organisms