Experiment setATCH177 for Dickeya dianthicola ME23

Compare to:

Norland

200 most detrimental genes:

  gene name fitness t score description  
DZA65_RS06145 +1.6 1.9 DUF454 family protein compare
DZA65_RS08425 +1.6 1.7 malonate decarboxylase acyl carrier protein compare
DZA65_RS03145 +1.4 5.1 putative DNA-binding transcriptional regulator compare
DZA65_RS04780 +1.3 4.3 hypothetical protein compare
DZA65_RS03410 +1.2 1.8 tRNA-Leu compare
DZA65_RS13320 +1.1 4.0 hotdog fold thioesterase compare
DZA65_RS02805 +1.1 3.0 helix-turn-helix transcriptional regulator compare
DZA65_RS03345 +1.1 1.2 cysteine synthase family protein compare
DZA65_RS03265 +1.1 2.1 protein YrbN compare
DZA65_RS20870 +1.0 2.4 DNA utilization protein GntX compare
DZA65_RS22635 +1.0 3.2 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
DZA65_RS14310 +1.0 1.3 LysR family transcriptional regulator compare
DZA65_RS22290 +0.9 7.7 substrate-binding domain-containing protein compare
DZA65_RS16460 +0.9 1.9 hypothetical protein compare
DZA65_RS16690 +0.8 1.8 Fe-S cluster assembly protein IscX compare
DZA65_RS00430 +0.8 6.5 histidine kinase compare
DZA65_RS00410 +0.8 5.8 helix-turn-helix transcriptional regulator compare
DZA65_RS22625 +0.8 4.5 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
DZA65_RS00425 +0.8 4.9 sigma-54-dependent Fis family transcriptional regulator compare
DZA65_RS19620 +0.8 6.2 deoxyribonuclease I compare
DZA65_RS04875 +0.8 2.5 hypothetical protein compare
DZA65_RS07010 +0.8 3.5 molybdate ABC transporter substrate-binding protein compare
DZA65_RS22775 +0.8 1.1 hypothetical protein compare
DZA65_RS01170 +0.8 5.1 DUF1176 domain-containing protein compare
DZA65_RS09035 +0.7 1.6 ABC transporter ATP-binding protein compare
DZA65_RS03515 +0.7 2.3 tRNA-Gly compare
DZA65_RS09370 +0.7 2.2 short-chain dehydrogenase compare
DZA65_RS18745 +0.7 2.8 flavin reductase family protein compare
DZA65_RS02420 +0.7 2.0 ABC transporter permease compare
DZA65_RS12595 +0.7 2.4 baseplate assembly protein compare
DZA65_RS03850 +0.7 5.3 MurR/RpiR family transcriptional regulator compare
DZA65_RS01710 +0.7 1.0 outer membrane channel protein TolC compare
DZA65_RS20965 +0.7 2.7 gluconokinase compare
DZA65_RS00415 +0.7 4.8 ABC transporter ATP-binding protein compare
DZA65_RS08815 +0.7 1.6 type II toxin-antitoxin system CcdA family antitoxin compare
DZA65_RS18910 +0.7 2.3 TIGR00730 family Rossman fold protein compare
DZA65_RS10320 +0.7 2.5 molecular chaperone compare
DZA65_RS05705 +0.7 3.4 hypothetical protein compare
DZA65_RS20905 +0.7 1.3 glycerol-3-phosphate dehydrogenase compare
DZA65_RS13105 +0.7 4.8 transcriptional regulator SlyA compare
DZA65_RS09265 +0.7 1.7 Hsp20 family protein compare
DZA65_RS21355 +0.7 1.3 ilv operon leader peptide compare
DZA65_RS07685 +0.7 2.4 helix-turn-helix transcriptional regulator compare
DZA65_RS15275 +0.6 2.5 hypothetical protein compare
DZA65_RS13110 +0.6 1.1 DUF1289 domain-containing protein compare
DZA65_RS06215 +0.6 2.1 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK compare
DZA65_RS08515 +0.6 2.0 efflux RND transporter periplasmic adaptor subunit compare
DZA65_RS11595 +0.6 1.7 cell division topological specificity factor MinE compare
DZA65_RS14215 +0.6 2.5 acyl carrier protein compare
DZA65_RS18455 +0.6 1.6 XTP/dITP diphosphatase compare
DZA65_RS18005 +0.6 2.1 Rcs stress response system protein RcsF compare
DZA65_RS12015 +0.6 1.9 VENN motif pre-toxin domain-containing protein compare
DZA65_RS21715 +0.6 1.7 L(+)-tartrate dehydratase subunit beta compare
DZA65_RS05840 +0.6 1.0 peroxiredoxin C compare
DZA65_RS04625 +0.6 1.7 IS4 family transposase compare
DZA65_RS03355 +0.6 1.0 hypothetical protein compare
DZA65_RS08855 +0.6 1.3 hypothetical protein compare
DZA65_RS11930 +0.6 1.1 type I toxin-antitoxin system SymE family toxin compare
DZA65_RS15230 +0.6 1.8 hypothetical protein compare
DZA65_RS01645 +0.6 3.0 aerobic respiration two-component sensor histidine kinase ArcB compare
DZA65_RS04290 +0.6 2.2 N-glycosyltransferase compare
DZA65_RS19975 +0.6 1.6 nitrogen fixation protein NifX compare
DZA65_RS07185 +0.6 1.4 hypothetical protein compare
DZA65_RS14480 +0.5 2.2 DUF2971 domain-containing protein compare
DZA65_RS22060 +0.5 1.8 DUF1471 domain-containing protein compare
DZA65_RS02930 +0.5 2.1 DUF883 domain-containing protein compare
DZA65_RS18690 +0.5 2.0 type I-F CRISPR-associated endoribonuclease Cas6/Csy4 compare
DZA65_RS16730 +0.5 2.1 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ compare
DZA65_RS04095 +0.5 2.3 terminase compare
DZA65_RS06750 +0.5 1.7 EamA family transporter compare
DZA65_RS18220 +0.5 1.8 hypothetical protein compare
DZA65_RS13975 +0.5 2.4 flagellar basal body P-ring protein FlgI compare
DZA65_RS15740 +0.5 1.3 putative motility protein compare
DZA65_RS00450 +0.5 2.8 hypothetical protein compare
DZA65_RS12625 +0.5 2.4 DNA endonuclease SmrA compare
DZA65_RS17005 +0.5 1.7 TSUP family transporter compare
DZA65_RS07090 +0.5 1.6 protein-tyrosine-phosphatase compare
DZA65_RS14095 +0.5 2.7 flagellar transcriptional regulator FlhD compare
DZA65_RS12270 +0.5 1.8 hypothetical protein compare
DZA65_RS04655 +0.5 1.9 efflux RND transporter permease subunit compare
DZA65_RS01860 +0.5 1.7 type I-E CRISPR-associated protein Cse1/CasA compare
DZA65_RS02610 +0.5 2.3 FAD-dependent urate hydroxylase HpxO compare
DZA65_RS14130 +0.5 2.5 holin compare
DZA65_RS16870 +0.5 3.6 cyclic-guanylate-specific phosphodiesterase compare
DZA65_RS08140 +0.5 1.4 type II toxin-antitoxin system HicB family antitoxin compare
DZA65_RS16380 +0.5 2.0 hypothetical protein compare
DZA65_RS04040 +0.5 0.8 hypothetical protein compare
DZA65_RS04070 +0.5 1.3 ogr/Delta-like zinc finger family protein compare
DZA65_RS00755 +0.5 1.5 JAB domain-containing protein compare
DZA65_RS01675 +0.5 1.8 YraN family protein compare
DZA65_RS16160 +0.5 3.0 MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit compare
DZA65_RS22835 +0.5 1.3 hypothetical protein compare
DZA65_RS06245 +0.5 1.4 2Fe-2S ferredoxin-like protein compare
DZA65_RS15470 +0.5 1.5 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
DZA65_RS06730 +0.5 1.7 LexA regulated protein compare
DZA65_RS21890 +0.4 2.0 transcriptional regulator compare
DZA65_RS11640 +0.4 2.2 CoA pyrophosphatase compare
DZA65_RS04035 +0.4 1.5 DUF2732 domain-containing protein compare
DZA65_RS01670 +0.4 1.8 DnaA initiator-associating protein DiaA compare
DZA65_RS03295 +0.4 2.9 N-acetyltransferase compare
DZA65_RS11845 +0.4 3.4 EAL domain-containing protein compare
DZA65_RS09095 +0.4 1.2 hypothetical protein compare
DZA65_RS14330 +0.4 1.6 helix-turn-helix transcriptional regulator compare
DZA65_RS00455 +0.4 3.0 acyl-CoA/acyl-ACP dehydrogenase compare
DZA65_RS17710 +0.4 1.8 YfiR family protein compare
DZA65_RS04020 +0.4 1.6 phage regulatory CII family protein compare
DZA65_RS17900 +0.4 3.3 transcriptional repressor MprA compare
DZA65_RS19790 +0.4 1.7 biotin attachment protein compare
DZA65_RS18965 +0.4 1.5 YacL family protein compare
DZA65_RS09675 +0.4 2.4 methyl-accepting chemotaxis protein compare
DZA65_RS05180 +0.4 1.7 hypothetical protein compare
DZA65_RS19775 +0.4 1.4 hypothetical protein compare
DZA65_RS14090 +0.4 3.3 flagellar transcriptional regulator FlhC compare
DZA65_RS12220 +0.4 2.0 type III secretion system ATPase SctN compare
DZA65_RS01650 +0.4 2.4 isoprenoid biosynthesis glyoxalase ElbB compare
DZA65_RS02475 +0.4 0.9 5-formyltetrahydrofolate cyclo-ligase compare
DZA65_RS05330 +0.4 1.6 potassium:proton antiporter compare
DZA65_RS09600 +0.4 2.1 sugar transporter compare
DZA65_RS00525 +0.4 1.5 hypothetical protein compare
DZA65_RS21055 +0.4 1.8 thioesterase family protein compare
DZA65_RS21550 +0.4 1.9 YiiQ family protein compare
DZA65_RS15060 +0.4 1.0 hypothetical protein compare
DZA65_RS17700 +0.4 2.5 sigma factor-binding protein Crl compare
DZA65_RS04205 +0.4 2.0 zinc ribbon domain-containing protein compare
DZA65_RS08995 +0.4 1.9 uridine diphosphate-N-acetylglucosamine-binding protein YvcK compare
DZA65_RS08265 +0.4 2.4 ABC transporter permease compare
DZA65_RS22250 +0.4 1.8 YihD family protein compare
DZA65_RS12985 +0.4 1.0 hypothetical protein compare
DZA65_RS18290 +0.4 2.5 translocation/assembly module TamB compare
DZA65_RS16170 +0.4 3.2 multidrug efflux RND transporter permease subunit MdtC compare
DZA65_RS13235 +0.4 1.6 AraC family transcriptional regulator compare
DZA65_RS20130 +0.4 1.4 ATP-binding cassette domain-containing protein compare
DZA65_RS07595 +0.4 1.2 conjugal transfer protein compare
DZA65_RS18870 +0.4 1.3 glycosyl hydrolase compare
DZA65_RS08755 +0.4 2.1 DUF1869 domain-containing protein compare
DZA65_RS05295 +0.4 0.6 RNA pyrophosphohydrolase compare
DZA65_RS18900 +0.4 1.3 metal ABC transporter permease compare
DZA65_RS09340 +0.4 1.4 glutathione S-transferase compare
DZA65_RS16760 +0.4 2.5 nickel/cobalt transporter compare
DZA65_RS22225 +0.4 0.9 Der GTPase-activating protein YihI compare
DZA65_RS06855 +0.4 1.8 ADP-forming succinate--CoA ligase subunit beta compare
DZA65_RS11530 +0.4 1.2 hemagglutinin compare
DZA65_RS15620 +0.4 1.2 alpha/beta hydrolase compare
DZA65_RS10680 +0.4 1.1 phage holin, lambda family compare
DZA65_RS11545 +0.4 3.1 SpoVR family protein compare
DZA65_RS17045 +0.4 1.6 AraC family transcriptional regulator compare
DZA65_RS21515 +0.4 1.2 ribonuclease E activity regulator RraA compare
DZA65_RS02395 +0.4 1.8 HTH-type transcriptional activator RhaS compare
DZA65_RS03910 +0.4 2.3 lytic murein transglycosylase B compare
DZA65_RS01025 +0.4 1.2 membrane protein compare
DZA65_RS04940 +0.4 1.9 lytic transglycosylase domain-containing protein compare
DZA65_RS02255 +0.4 1.6 D-threitol dehydrogenase compare
DZA65_RS00520 +0.4 1.2 acyl-homoserine-lactone synthase compare
DZA65_RS21545 +0.4 0.4 DUF805 domain-containing protein compare
DZA65_RS01995 +0.4 1.7 DUF29 domain-containing protein compare
DZA65_RS17175 +0.4 1.8 ABC transporter ATP-binding protein compare
DZA65_RS16125 +0.4 1.2 YccF domain-containing protein compare
DZA65_RS20580 +0.4 2.4 FKBP-type peptidyl-prolyl cis-trans isomerase compare
DZA65_RS00530 +0.4 0.5 DUF1471 domain-containing protein compare
DZA65_RS11195 +0.4 1.2 dicarboxylate transporter/tellurite-resistance protein TehA compare
DZA65_RS01345 +0.4 1.9 hypothetical protein compare
DZA65_RS10285 +0.4 1.3 LysR family transcriptional regulator compare
DZA65_RS20165 +0.4 2.4 miniconductance mechanosensitive channel MscM compare
DZA65_RS11675 +0.4 1.6 DUF986 domain-containing protein compare
DZA65_RS10630 +0.4 2.5 response regulator compare
DZA65_RS22295 +0.4 2.8 ribokinase compare
DZA65_RS17485 +0.4 1.9 ankyrin repeat domain-containing protein compare
DZA65_RS08370 +0.4 1.7 LysR family transcriptional regulator compare
DZA65_RS09850 +0.4 1.5 N-acetylmuramoyl-L-alanine amidase compare
DZA65_RS12775 +0.4 0.8 serine protease compare
DZA65_RS12605 +0.4 1.6 phage tail protein I compare
DZA65_RS12115 +0.4 1.3 hypothetical protein compare
DZA65_RS20595 +0.4 1.8 phosphotransferase compare
DZA65_RS10255 +0.4 1.4 helix-turn-helix transcriptional regulator compare
DZA65_RS20330 +0.4 2.1 DUF494 domain-containing protein compare
DZA65_RS13940 +0.3 1.8 flagellar biosynthetic protein FliO compare
DZA65_RS22505 +0.3 1.9 hotdog family protein compare
DZA65_RS00995 +0.3 2.4 transcription/translation regulatory transformer protein RfaH compare
DZA65_RS21805 +0.3 2.1 MFS transporter compare
DZA65_RS11605 +0.3 2.2 long-chain-fatty-acid--CoA ligase FadD compare
DZA65_RS14640 +0.3 1.1 helix-turn-helix transcriptional regulator compare
DZA65_RS08920 +0.3 1.1 acyl-CoA thioesterase compare
DZA65_RS09365 +0.3 1.5 hypothetical protein compare
DZA65_RS04090 +0.3 2.1 phage major capsid protein, P2 family compare
DZA65_RS02835 +0.3 2.7 protein-disulfide reductase DsbD compare
DZA65_RS11630 +0.3 1.3 YoaH family protein compare
DZA65_RS13945 +0.3 2.7 flagellar type III secretion system pore protein FliP compare
DZA65_RS15185 +0.3 2.0 hypothetical protein compare
DZA65_RS08330 +0.3 1.5 ABC transporter permease subunit compare
DZA65_RS06490 +0.3 1.6 YpfN family protein compare
DZA65_RS16245 +0.3 1.0 amino acid ABC transporter permease compare
DZA65_RS00585 +0.3 1.2 membrane dipeptidase compare
DZA65_RS08825 +0.3 1.3 Hcp family type VI secretion system effector compare
DZA65_RS18020 +0.3 2.5 RNA polymerase sigma factor RpoS compare
DZA65_RS06615 +0.3 1.6 glutamate/aspartate ABC transporter substrate-binding protein compare
DZA65_RS04050 +0.3 1.4 DNA cytosine methyltransferase compare
DZA65_RS06780 +0.3 1.1 K(+)-transporting ATPase subunit F compare
DZA65_RS07505 +0.3 1.2 Trm112 family protein compare
DZA65_RS05940 +0.3 2.1 2-dehydropantoate 2-reductase compare
DZA65_RS19490 +0.3 2.2 tRNA/rRNA methyltransferase compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola ME23 in plant experiments

For plant cv.Norland across organisms