Experiment setATCH176 for Dickeya dianthicola ME23

Compare to:

Atlantic

200 most important genes:

  gene name fitness t score description  
DZA65_RS05310 -4.2 -8.5 thymidylate synthase compare
DZA65_RS00800 -3.6 -4.9 O-antigen ligase family protein compare
DZA65_RS06895 -3.1 -7.0 Tol-Pal system protein TolQ compare
DZA65_RS10940 -3.1 -12.3 tryptophan synthase subunit alpha compare
DZA65_RS10905 -3.0 -6.9 TonB system transport protein TonB compare
DZA65_RS16090 -2.9 -2.7 sulfurtransferase TusE compare
DZA65_RS11865 -2.7 -5.7 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS11720 -2.6 -8.0 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DZA65_RS03635 -2.4 -8.0 sugar transferase compare
DZA65_RS18650 -2.3 -5.6 alanine racemase compare
DZA65_RS13750 -2.3 -12.6 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS10585 -2.3 -5.6 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DZA65_RS10945 -2.2 -11.0 tryptophan synthase subunit beta compare
DZA65_RS02490 -2.2 -8.4 phosphoserine phosphatase compare
DZA65_RS13755 -2.1 -8.2 glucan biosynthesis protein G compare
DZA65_RS10965 -2.1 -10.6 anthranilate synthase component 1 compare
DZA65_RS15990 -2.1 -4.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
DZA65_RS07125 -2.1 -10.3 dTDP-4-dehydrorhamnose reductase compare
DZA65_RS02505 -2.0 -4.2 peptide chain release factor 3 compare
DZA65_RS06115 -2.0 -16.1 multidrug efflux RND transporter permease subunit compare
DZA65_RS06120 -2.0 -12.5 efflux RND transporter periplasmic adaptor subunit compare
DZA65_RS19290 -2.0 -2.5 hypothetical protein compare
DZA65_RS10950 -2.0 -8.7 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DZA65_RS00795 -2.0 -8.1 glycosyltransferase family 9 protein compare
DZA65_RS05975 -2.0 -2.4 cytochrome o ubiquinol oxidase subunit III compare
DZA65_RS07120 -2.0 -3.2 dTDP-4-dehydrorhamnose 3,5-epimerase compare
DZA65_RS12505 -1.9 -6.2 carboxy terminal-processing peptidase compare
DZA65_RS16715 -1.9 -1.6 Fe-S cluster assembly scaffold IscU compare
DZA65_RS03260 -1.9 -6.7 lipoprotein NlpI compare
DZA65_RS00365 -1.8 -9.8 DMT family transporter compare
DZA65_RS00790 -1.8 -2.4 glycosyltransferase family 4 protein compare
DZA65_RS17345 -1.8 -10.0 bifunctional chorismate mutase/prephenate dehydratase compare
DZA65_RS11655 -1.8 -10.3 TerC family protein compare
DZA65_RS21790 -1.8 -2.5 sulfurtransferase TusA compare
DZA65_RS06020 -1.8 -8.4 endopeptidase La compare
DZA65_RS00810 -1.8 -3.4 putative lipopolysaccharide heptosyltransferase III compare
DZA65_RS10955 -1.8 -6.0 anthranilate phosphoribosyltransferase compare
DZA65_RS19655 -1.8 -2.8 adenylosuccinate synthase compare
DZA65_RS20550 -1.7 -3.2 sulfurtransferase complex subunit TusC compare
DZA65_RS19215 -1.7 -5.0 3-isopropylmalate dehydratase small subunit compare
DZA65_RS21610 -1.7 -6.5 envelope stress response regulator transcription factor CpxR compare
DZA65_RS05840 -1.7 -2.5 peroxiredoxin C compare
DZA65_RS09455 -1.7 -5.0 DUF3413 domain-containing protein compare
DZA65_RS19205 -1.6 -10.2 3-isopropylmalate dehydrogenase compare
DZA65_RS10485 -1.6 -4.5 membrane protein compare
DZA65_RS03230 -1.6 -1.9 transcription termination/antitermination protein NusA compare
DZA65_RS11925 -1.6 -2.1 DNA-damage-inducible protein J compare
DZA65_RS19210 -1.6 -8.4 3-isopropylmalate dehydratase large subunit compare
DZA65_RS10810 -1.6 -8.4 formyltetrahydrofolate deformylase compare
DZA65_RS19540 -1.6 -6.2 phosphoglycerate dehydrogenase compare
DZA65_RS18020 -1.6 -8.7 RNA polymerase sigma factor RpoS compare
DZA65_RS19745 -1.5 -7.8 GDP-L-fucose synthase compare
DZA65_RS22735 -1.5 -2.8 hypothetical protein compare
DZA65_RS13330 -1.5 -5.6 AI-2E family transporter YdiK compare
DZA65_RS22895 -1.5 -3.0 hypothetical protein compare
DZA65_RS13570 -1.5 -5.0 glycine zipper 2TM domain-containing protein compare
DZA65_RS16610 -1.5 -8.3 IMP dehydrogenase compare
DZA65_RS01260 -1.5 -9.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DZA65_RS01585 -1.5 -8.1 serine endoprotease DegQ compare
DZA65_RS18160 -1.5 -2.0 glycerate kinase compare
DZA65_RS20805 -1.5 -1.2 intracellular growth attenuator family protein compare
DZA65_RS06900 -1.5 -1.2 colicin uptake protein TolR compare
DZA65_RS06985 -1.5 -6.2 galactose-1-phosphate uridylyltransferase compare
DZA65_RS01795 -1.5 -5.5 TonB system transport protein ExbD compare
DZA65_RS01370 -1.5 -1.9 YhdT family protein compare
DZA65_RS21825 -1.4 -10.5 sugar kinase compare
DZA65_RS19350 -1.4 -3.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
DZA65_RS21335 -1.4 -9.9 dihydroxy-acid dehydratase compare
DZA65_RS15995 -1.4 -6.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
DZA65_RS02945 -1.4 -2.6 transcriptional regulator ExuR compare
DZA65_RS19475 -1.4 -3.8 threonine synthase compare
DZA65_RS01545 -1.4 -3.6 phospholipid ABC transporter ATP-binding protein MlaF compare
DZA65_RS01350 -1.3 -2.4 DNA-binding transcriptional regulator Fis compare
DZA65_RS09910 -1.3 -3.9 thioredoxin-disulfide reductase compare
DZA65_RS03670 -1.3 -4.4 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
DZA65_RS18320 -1.3 -5.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DZA65_RS01525 -1.3 -2.8 LPS export ABC transporter periplasmic protein LptC compare
DZA65_RS21310 -1.3 -8.4 ketol-acid reductoisomerase compare
DZA65_RS06660 -1.3 -2.6 tRNA-Met compare
DZA65_RS00840 -1.3 -4.2 rhodanese-like domain-containing protein compare
DZA65_RS21270 -1.3 -10.0 ATP-dependent RNA helicase RhlB compare
DZA65_RS03210 -1.3 -1.5 preprotein translocase subunit SecG compare
DZA65_RS19665 -1.2 -3.1 protease modulator HflC compare
DZA65_RS13710 -1.2 -7.5 dihydroorotase compare
DZA65_RS06420 -1.2 -7.0 phosphoribosylformylglycinamidine cyclo-ligase compare
DZA65_RS01785 -1.2 -7.8 cystathionine beta-lyase compare
DZA65_RS11020 -1.2 -6.8 HTH-type transcriptional regulator CysB compare
DZA65_RS06990 -1.2 -7.4 UDP-glucose 4-epimerase GalE compare
DZA65_RS19200 -1.2 -9.4 2-isopropylmalate synthase compare
DZA65_RS12020 -1.2 -4.2 ribonuclease toxin immunity protein CdiI compare
DZA65_RS10915 -1.2 -4.0 septation protein A compare
DZA65_RS13645 -1.2 -4.8 beta-ketoacyl-ACP synthase II compare
DZA65_RS19480 -1.2 -2.9 homoserine kinase compare
DZA65_RS19670 -1.2 -2.8 FtsH protease activity modulator HflK compare
DZA65_RS13880 -1.1 -4.5 flagellar export chaperone FliS compare
DZA65_RS21090 -1.1 -1.6 tyrosine recombinase XerC compare
DZA65_RS13875 -1.1 -7.3 flagellar filament capping protein FliD compare
DZA65_RS19160 -1.1 -2.5 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DZA65_RS00740 -1.1 -1.8 nucleoid occlusion factor SlmA compare
DZA65_RS13390 -1.1 -5.7 quinone-dependent dihydroorotate dehydrogenase compare
DZA65_RS11930 -1.1 -1.9 type I toxin-antitoxin system SymE family toxin compare
DZA65_RS19735 -1.1 -3.0 ABC transporter permease compare
DZA65_RS19725 -1.1 -9.1 phosphomannomutase/phosphoglucomutase compare
DZA65_RS16830 -1.1 -9.2 phosphoribosylformylglycinamidine synthase compare
DZA65_RS06565 -1.1 -3.4 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
DZA65_RS06145 -1.1 -1.9 DUF454 family protein compare
DZA65_RS00735 -1.1 -4.3 orotate phosphoribosyltransferase compare
DZA65_RS02940 -1.1 -4.7 DedA family protein compare
DZA65_RS00835 -1.1 -5.7 murein hydrolase activator EnvC compare
DZA65_RS01920 -1.1 -2.8 DUF1311 domain-containing protein compare
DZA65_RS18550 -1.1 -6.5 diaminopimelate decarboxylase compare
DZA65_RS00845 -1.1 -2.5 protein-export chaperone SecB compare
DZA65_RS19730 -1.1 -8.1 GDP-mannose 4,6-dehydratase compare
DZA65_RS19720 -1.1 -8.0 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
DZA65_RS13030 -1.1 -6.2 orotidine-5'-phosphate decarboxylase compare
DZA65_RS01615 -1.1 -6.3 stringent starvation protein A compare
DZA65_RS19750 -1.1 -5.6 hypothetical protein compare
DZA65_RS22210 -1.1 -6.7 nitrogen regulation protein NR(I) compare
DZA65_RS21080 -1.1 -5.8 DNA helicase II compare
DZA65_RS22005 -1.1 -5.7 inorganic phosphate transporter PitA compare
DZA65_RS20005 -1.1 -2.2 helix-turn-helix transcriptional regulator compare
DZA65_RS21755 -1.1 -5.2 cell division protein FtsX compare
DZA65_RS04355 -1.1 -6.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DZA65_RS21115 -1.1 -5.0 class I adenylate cyclase compare
DZA65_RS21265 -1.1 -2.3 thioredoxin TrxA compare
DZA65_RS13230 -1.1 -2.3 DUF1471 domain-containing protein compare
DZA65_RS06470 -1.0 -4.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DZA65_RS07110 -1.0 -4.3 dTDP-glucose 4,6-dehydratase compare
DZA65_RS00360 -1.0 -4.9 MarR family transcriptional regulator compare
DZA65_RS16960 -1.0 -1.7 tRNA-Ala compare
DZA65_RS01790 -1.0 -6.8 tol-pal system-associated acyl-CoA thioesterase compare
DZA65_RS01405 -1.0 -8.4 RNase E specificity factor CsrD compare
DZA65_RS13040 -1.0 -2.7 LapA family protein compare
DZA65_RS18085 -1.0 -7.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
DZA65_RS01255 -1.0 -6.3 phosphoribosylamine--glycine ligase compare
DZA65_RS06625 -1.0 -5.3 CNNM family magnesium/cobalt transport protein CorC compare
DZA65_RS10550 -1.0 -2.5 murein DD-endopeptidase MepM compare
DZA65_RS22195 -1.0 -5.9 ribosome-dependent GTPase TypA compare
DZA65_RS20275 -1.0 -6.2 homoserine O-succinyltransferase compare
DZA65_RS19685 -1.0 -1.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
DZA65_RS22290 -1.0 -8.2 substrate-binding domain-containing protein compare
DZA65_RS03625 -1.0 -7.3 polysaccharide biosynthesis protein compare
DZA65_RS20555 -0.9 -2.0 sulfurtransferase complex subunit TusD compare
DZA65_RS22360 -0.9 -7.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DZA65_RS09375 -0.9 -1.8 type II toxin-antitoxin system RelE/ParE family toxin compare
DZA65_RS12995 -0.9 -4.3 exoribonuclease II compare
DZA65_RS17015 -0.9 -2.2 PTS lactose/cellobiose transporter subunit IIA compare
DZA65_RS13110 -0.9 -1.2 DUF1289 domain-containing protein compare
DZA65_RS19380 -0.9 -6.9 carbamoyl-phosphate synthase large subunit compare
DZA65_RS19495 -0.9 -1.6 two-component system response regulator ArcA compare
DZA65_RS11565 -0.9 -2.8 disulfide bond formation protein DsbB compare
DZA65_RS15760 -0.9 -7.1 beta-galactosidase compare
DZA65_RS01560 -0.9 -5.0 phospholipid-binding protein MlaC compare
DZA65_RS21275 -0.9 -5.5 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
DZA65_RS05965 -0.9 -2.7 protoheme IX farnesyltransferase compare
DZA65_RS11120 -0.9 -5.2 mannose-6-phosphate isomerase compare
DZA65_RS22240 -0.9 -5.7 thiol:disulfide interchange protein DsbA compare
DZA65_RS18310 -0.9 -3.2 HlyC/CorC family transporter compare
DZA65_RS06685 -0.9 -6.1 asparagine synthase B compare
DZA65_RS15335 -0.9 -7.0 amidophosphoribosyltransferase compare
DZA65_RS21545 -0.9 -1.9 DUF805 domain-containing protein compare
DZA65_RS15515 -0.8 -4.8 phospholipid-binding lipoprotein MlaA compare
DZA65_RS19175 -0.8 -5.8 catabolite repressor/activator compare
DZA65_RS10980 -0.8 -2.3 23S rRNA pseudouridine(2605) synthase RluB compare
DZA65_RS03255 -0.8 -1.2 polyribonucleotide nucleotidyltransferase compare
DZA65_RS06860 -0.8 -4.1 succinate--CoA ligase subunit alpha compare
DZA65_RS19485 -0.8 -6.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
DZA65_RS22705 -0.8 -2.0 membrane protein insertion efficiency factor YidD compare
DZA65_RS19740 -0.8 -4.2 ABC transporter ATP-binding protein compare
DZA65_RS17255 -0.8 -1.5 ribonuclease HI compare
DZA65_RS21475 -0.8 -1.6 met regulon transcriptional regulator MetJ compare
DZA65_RS03130 -0.8 -3.9 malate dehydrogenase compare
DZA65_RS01970 -0.8 -4.9 aspartate carbamoyltransferase compare
DZA65_RS00870 -0.8 -5.0 HTH-type transcriptional regulator MetR compare
DZA65_RS05985 -0.8 -3.0 cytochrome o ubiquinol oxidase subunit II compare
DZA65_RS10680 -0.8 -1.5 phage holin, lambda family compare
DZA65_RS22635 -0.8 -1.9 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
DZA65_RS00675 -0.8 -1.5 isoaspartyl peptidase/L-asparaginase compare
DZA65_RS06030 -0.8 -6.3 peptidylprolyl isomerase compare
DZA65_RS21585 -0.8 -2.6 Pr2TM family membrane protein compare
DZA65_RS02245 -0.8 -1.8 transketolase compare
DZA65_RS19195 -0.8 -2.1 leu operon leader peptide compare
DZA65_RS15280 -0.8 -3.6 acetate kinase compare
DZA65_RS09240 -0.8 -1.3 biotin carboxyl carrier domain-containing protein compare
DZA65_RS21470 -0.8 -5.6 cystathionine gamma-synthase compare
DZA65_RS16705 -0.8 -2.5 co-chaperone HscB compare
DZA65_RS15370 -0.8 -3.3 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS13670 -0.8 -2.9 phosphate acyltransferase PlsX compare
DZA65_RS08135 -0.8 -1.7 RraA family protein compare
DZA65_RS04230 -0.8 -4.5 outer membrane protein assembly factor BamE compare
DZA65_RS13435 -0.8 -5.4 porin compare
DZA65_RS17145 -0.8 -3.3 polynucleotide adenylyltransferase PcnB compare
DZA65_RS10960 -0.8 -1.8 C26 family cysteine hydrolase domain-containing family compare
DZA65_RS19755 -0.8 -4.3 glycosyltransferase compare
DZA65_RS11390 -0.7 -3.9 tetratricopeptide repeat-containing protein compare
DZA65_RS01530 -0.7 -6.0 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DZA65_RS15625 -0.7 -2.4 membrane protein YpdK compare
DZA65_RS05855 -0.7 -3.4 tRNA guanosine(34) transglycosylase Tgt compare
DZA65_RS21075 -0.7 -2.5 magnesium/cobalt transporter CorA compare
DZA65_RS17115 -0.7 -1.2 bifunctional glycosyl transferase/transpeptidase compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola ME23 in plant experiments

For plant cv.Atlantic across organisms