Experiment setATCH175 for Dickeya dianthicola ME23

Compare to:

Atlantic

200 most important genes:

  gene name fitness t score description  
DZA65_RS05310 -3.9 -10.2 thymidylate synthase compare
DZA65_RS06120 -3.3 -15.6 efflux RND transporter periplasmic adaptor subunit compare
DZA65_RS06115 -3.2 -23.3 multidrug efflux RND transporter permease subunit compare
DZA65_RS19290 -3.2 -3.9 hypothetical protein compare
DZA65_RS06510 -3.2 -2.5 transcription antiterminator/RNA stability regulator CspE compare
DZA65_RS06895 -3.1 -7.2 Tol-Pal system protein TolQ compare
DZA65_RS00800 -2.9 -4.6 O-antigen ligase family protein compare
DZA65_RS16610 -2.8 -13.4 IMP dehydrogenase compare
DZA65_RS02490 -2.7 -10.3 phosphoserine phosphatase compare
DZA65_RS19480 -2.5 -4.6 homoserine kinase compare
DZA65_RS17345 -2.5 -11.8 bifunctional chorismate mutase/prephenate dehydratase compare
DZA65_RS10905 -2.5 -8.0 TonB system transport protein TonB compare
DZA65_RS20550 -2.4 -4.1 sulfurtransferase complex subunit TusC compare
DZA65_RS19215 -2.3 -5.8 3-isopropylmalate dehydratase small subunit compare
DZA65_RS11720 -2.3 -7.7 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DZA65_RS01260 -2.3 -14.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DZA65_RS13750 -2.3 -11.6 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS10945 -2.2 -12.7 tryptophan synthase subunit beta compare
DZA65_RS19205 -2.2 -11.9 3-isopropylmalate dehydrogenase compare
DZA65_RS01350 -2.2 -3.2 DNA-binding transcriptional regulator Fis compare
DZA65_RS13755 -2.1 -9.0 glucan biosynthesis protein G compare
DZA65_RS16090 -2.1 -2.4 sulfurtransferase TusE compare
DZA65_RS10585 -2.1 -6.8 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DZA65_RS12505 -2.1 -6.9 carboxy terminal-processing peptidase compare
DZA65_RS18650 -2.1 -5.2 alanine racemase compare
DZA65_RS21310 -2.1 -12.6 ketol-acid reductoisomerase compare
DZA65_RS03635 -2.0 -5.8 sugar transferase compare
DZA65_RS10940 -2.0 -8.2 tryptophan synthase subunit alpha compare
DZA65_RS06420 -2.0 -10.8 phosphoribosylformylglycinamidine cyclo-ligase compare
DZA65_RS00735 -2.0 -7.4 orotate phosphoribosyltransferase compare
DZA65_RS15995 -2.0 -8.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
DZA65_RS11865 -2.0 -5.2 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS19200 -1.9 -14.9 2-isopropylmalate synthase compare
DZA65_RS03260 -1.9 -6.1 lipoprotein NlpI compare
DZA65_RS16830 -1.9 -15.6 phosphoribosylformylglycinamidine synthase compare
DZA65_RS06470 -1.9 -7.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DZA65_RS10810 -1.9 -9.7 formyltetrahydrofolate deformylase compare
DZA65_RS19210 -1.9 -10.2 3-isopropylmalate dehydratase large subunit compare
DZA65_RS11395 -1.9 -3.3 peptide chain release factor N(5)-glutamine methyltransferase compare
DZA65_RS19540 -1.8 -5.7 phosphoglycerate dehydrogenase compare
DZA65_RS11020 -1.8 -10.3 HTH-type transcriptional regulator CysB compare
DZA65_RS10965 -1.8 -9.2 anthranilate synthase component 1 compare
DZA65_RS19380 -1.8 -12.4 carbamoyl-phosphate synthase large subunit compare
DZA65_RS19655 -1.7 -2.2 adenylosuccinate synthase compare
DZA65_RS21335 -1.7 -9.4 dihydroxy-acid dehydratase compare
DZA65_RS19475 -1.7 -5.1 threonine synthase compare
DZA65_RS01970 -1.7 -11.0 aspartate carbamoyltransferase compare
DZA65_RS05975 -1.7 -2.7 cytochrome o ubiquinol oxidase subunit III compare
DZA65_RS00795 -1.6 -6.5 glycosyltransferase family 9 protein compare
DZA65_RS10950 -1.6 -8.8 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DZA65_RS13330 -1.6 -6.9 AI-2E family transporter YdiK compare
DZA65_RS21800 -1.6 -2.9 DcrB family lipoprotein compare
DZA65_RS15990 -1.6 -2.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
DZA65_RS21050 -1.6 -2.0 hypothetical protein compare
DZA65_RS07120 -1.6 -2.7 dTDP-4-dehydrorhamnose 3,5-epimerase compare
DZA65_RS15335 -1.6 -11.8 amidophosphoribosyltransferase compare
DZA65_RS03670 -1.6 -4.9 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
DZA65_RS10915 -1.5 -5.7 septation protein A compare
DZA65_RS19485 -1.5 -10.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
DZA65_RS01255 -1.5 -8.9 phosphoribosylamine--glycine ligase compare
DZA65_RS13710 -1.5 -8.5 dihydroorotase compare
DZA65_RS15565 -1.5 -2.5 hypothetical protein compare
DZA65_RS00845 -1.4 -2.6 protein-export chaperone SecB compare
DZA65_RS13030 -1.4 -7.9 orotidine-5'-phosphate decarboxylase compare
DZA65_RS13880 -1.4 -5.3 flagellar export chaperone FliS compare
DZA65_RS21420 -1.4 -9.5 glutamate racemase compare
DZA65_RS10960 -1.4 -2.3 C26 family cysteine hydrolase domain-containing family compare
DZA65_RS13390 -1.4 -5.6 quinone-dependent dihydroorotate dehydrogenase compare
DZA65_RS04230 -1.4 -7.5 outer membrane protein assembly factor BamE compare
DZA65_RS21790 -1.4 -2.0 sulfurtransferase TusA compare
DZA65_RS17985 -1.4 -3.2 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
DZA65_RS21610 -1.4 -6.0 envelope stress response regulator transcription factor CpxR compare
DZA65_RS09455 -1.4 -4.3 DUF3413 domain-containing protein compare
DZA65_RS15370 -1.3 -4.9 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS10555 -1.3 -1.7 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
DZA65_RS06020 -1.3 -7.0 endopeptidase La compare
DZA65_RS16715 -1.3 -1.3 Fe-S cluster assembly scaffold IscU compare
DZA65_RS18550 -1.3 -7.1 diaminopimelate decarboxylase compare
DZA65_RS16725 -1.3 -2.9 Fe-S cluster assembly transcriptional regulator IscR compare
DZA65_RS22195 -1.3 -7.2 ribosome-dependent GTPase TypA compare
DZA65_RS21330 -1.3 -9.4 threonine ammonia-lyase, biosynthetic compare
DZA65_RS18160 -1.3 -1.7 glycerate kinase compare
DZA65_RS12020 -1.3 -4.4 ribonuclease toxin immunity protein CdiI compare
DZA65_RS15520 -1.3 -6.7 tRNA-Arg compare
DZA65_RS01545 -1.2 -4.1 phospholipid ABC transporter ATP-binding protein MlaF compare
DZA65_RS18320 -1.2 -4.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DZA65_RS15285 -1.2 -5.0 phosphate acetyltransferase compare
DZA65_RS01785 -1.2 -8.0 cystathionine beta-lyase compare
DZA65_RS19745 -1.2 -6.3 GDP-L-fucose synthase compare
DZA65_RS01560 -1.2 -6.8 phospholipid-binding protein MlaC compare
DZA65_RS06990 -1.2 -7.5 UDP-glucose 4-epimerase GalE compare
DZA65_RS22210 -1.2 -7.1 nitrogen regulation protein NR(I) compare
DZA65_RS16635 -1.2 -2.2 outer membrane protein assembly factor BamB compare
DZA65_RS00360 -1.2 -4.7 MarR family transcriptional regulator compare
DZA65_RS13875 -1.1 -7.4 flagellar filament capping protein FliD compare
DZA65_RS00790 -1.1 -1.0 glycosyltransferase family 4 protein compare
DZA65_RS21270 -1.1 -9.2 ATP-dependent RNA helicase RhlB compare
DZA65_RS05500 -1.1 -2.9 molecular chaperone Skp compare
DZA65_RS00365 -1.1 -5.1 DMT family transporter compare
DZA65_RS16960 -1.1 -2.7 tRNA-Ala compare
DZA65_RS20355 -1.1 -4.4 Trk system potassium transporter TrkA compare
DZA65_RS20555 -1.1 -2.3 sulfurtransferase complex subunit TusD compare
DZA65_RS10485 -1.1 -4.1 membrane protein compare
DZA65_RS01920 -1.1 -3.3 DUF1311 domain-containing protein compare
DZA65_RS03625 -1.1 -8.9 polysaccharide biosynthesis protein compare
DZA65_RS21265 -1.1 -3.3 thioredoxin TrxA compare
DZA65_RS04355 -1.1 -6.5 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DZA65_RS09910 -1.1 -3.6 thioredoxin-disulfide reductase compare
DZA65_RS15515 -1.1 -6.0 phospholipid-binding lipoprotein MlaA compare
DZA65_RS22875 -1.1 -1.6 hypothetical protein compare
DZA65_RS00740 -1.0 -2.1 nucleoid occlusion factor SlmA compare
DZA65_RS01615 -1.0 -5.9 stringent starvation protein A compare
DZA65_RS11655 -1.0 -7.2 TerC family protein compare
DZA65_RS02300 -1.0 -2.5 type-1Ba cytolytic delta-endotoxin compare
DZA65_RS19385 -1.0 -5.5 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DZA65_RS21825 -1.0 -7.6 sugar kinase compare
DZA65_RS01550 -1.0 -4.4 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
DZA65_RS20805 -1.0 -1.2 intracellular growth attenuator family protein compare
DZA65_RS21470 -1.0 -7.2 cystathionine gamma-synthase compare
DZA65_RS07125 -1.0 -5.1 dTDP-4-dehydrorhamnose reductase compare
DZA65_RS02940 -1.0 -3.7 DedA family protein compare
DZA65_RS19350 -1.0 -2.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
DZA65_RS21475 -1.0 -2.0 met regulon transcriptional regulator MetJ compare
DZA65_RS01510 -1.0 -4.2 RNA polymerase factor sigma-54 compare
DZA65_RS22360 -1.0 -7.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DZA65_RS22005 -1.0 -6.3 inorganic phosphate transporter PitA compare
DZA65_RS19195 -1.0 -2.7 leu operon leader peptide compare
DZA65_RS22240 -1.0 -6.3 thiol:disulfide interchange protein DsbA compare
DZA65_RS10955 -1.0 -4.1 anthranilate phosphoribosyltransferase compare
DZA65_RS11435 -1.0 -3.4 redox-regulated ATPase YchF compare
DZA65_RS12770 -1.0 -2.7 acid resistance repetitive basic protein Asr compare
DZA65_RS21275 -0.9 -5.8 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
DZA65_RS20275 -0.9 -6.1 homoserine O-succinyltransferase compare
DZA65_RS01405 -0.9 -7.6 RNase E specificity factor CsrD compare
DZA65_RS18085 -0.9 -6.2 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
DZA65_RS10050 -0.9 -3.0 histidinol-phosphate transaminase compare
DZA65_RS18020 -0.9 -5.6 RNA polymerase sigma factor RpoS compare
DZA65_RS19735 -0.9 -3.5 ABC transporter permease compare
DZA65_RS01555 -0.9 -6.0 outer membrane lipid asymmetry maintenance protein MlaD compare
DZA65_RS10030 -0.9 -3.0 imidazole glycerol phosphate synthase subunit HisF compare
DZA65_RS06820 -0.9 -1.8 citrate synthase compare
DZA65_RS07180 -0.9 -5.0 NADP-dependent phosphogluconate dehydrogenase compare
DZA65_RS13570 -0.9 -2.5 glycine zipper 2TM domain-containing protein compare
DZA65_RS03605 -0.9 -1.3 cation efflux system protein CusF compare
DZA65_RS02200 -0.9 -1.6 hypothetical protein compare
DZA65_RS13435 -0.9 -6.1 porin compare
DZA65_RS05240 -0.9 -3.2 oxidative damage protection protein compare
DZA65_RS17690 -0.8 -6.0 glutamate-5-semialdehyde dehydrogenase compare
DZA65_RS18215 -0.8 -1.6 hypothetical protein compare
DZA65_RS16910 -0.8 -4.4 elongation factor 4 compare
DZA65_RS13025 -0.8 -1.5 stress response translation initiation inhibitor YciH compare
DZA65_RS00870 -0.8 -4.6 HTH-type transcriptional regulator MetR compare
DZA65_RS21090 -0.8 -1.2 tyrosine recombinase XerC compare
DZA65_RS05965 -0.8 -2.7 protoheme IX farnesyltransferase compare
DZA65_RS11585 -0.8 -3.6 septum site-determining protein MinC compare
DZA65_RS01795 -0.8 -3.0 TonB system transport protein ExbD compare
DZA65_RS18405 -0.8 -5.9 ribonuclease R compare
DZA65_RS06730 -0.8 -1.8 LexA regulated protein compare
DZA65_RS20005 -0.8 -1.5 helix-turn-helix transcriptional regulator compare
DZA65_RS00810 -0.8 -1.7 putative lipopolysaccharide heptosyltransferase III compare
DZA65_RS19740 -0.8 -3.9 ABC transporter ATP-binding protein compare
DZA65_RS19725 -0.8 -6.7 phosphomannomutase/phosphoglucomutase compare
DZA65_RS07460 -0.8 -3.3 SDR family oxidoreductase compare
DZA65_RS03230 -0.8 -1.0 transcription termination/antitermination protein NusA compare
DZA65_RS16045 -0.8 -3.6 polyphosphate kinase 1 compare
DZA65_RS11390 -0.8 -3.8 tetratricopeptide repeat-containing protein compare
DZA65_RS19730 -0.8 -5.7 GDP-mannose 4,6-dehydratase compare
DZA65_RS05855 -0.8 -4.1 tRNA guanosine(34) transglycosylase Tgt compare
DZA65_RS07065 -0.8 -3.0 dCTP deaminase compare
DZA65_RS17255 -0.8 -1.2 ribonuclease HI compare
DZA65_RS21755 -0.8 -3.1 cell division protein FtsX compare
DZA65_RS17115 -0.8 -2.4 bifunctional glycosyl transferase/transpeptidase compare
DZA65_RS11715 -0.8 -5.0 5-dehydro-4-deoxy-D-glucuronate isomerase compare
DZA65_RS18270 -0.7 -2.4 glycerol-3-phosphate 1-O-acyltransferase PlsY compare
DZA65_RS06860 -0.7 -3.1 succinate--CoA ligase subunit alpha compare
DZA65_RS06800 -0.7 -3.0 type 2 GTP cyclohydrolase I compare
DZA65_RS22735 -0.7 -1.4 hypothetical protein compare
DZA65_RS07315 -0.7 -2.3 transposase compare
DZA65_RS15560 -0.7 -3.7 ABC transporter ATP-binding protein compare
DZA65_RS04030 -0.7 -2.4 hypothetical protein compare
DZA65_RS01790 -0.7 -5.4 tol-pal system-associated acyl-CoA thioesterase compare
DZA65_RS13085 -0.7 -2.1 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS07030 -0.7 -3.9 6-phosphogluconolactonase compare
DZA65_RS01530 -0.7 -5.4 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DZA65_RS21340 -0.7 -5.4 branched-chain amino acid transaminase compare
DZA65_RS13385 -0.7 -2.3 cell division protein ZapC compare
DZA65_RS14380 -0.7 -3.0 TrbC/VirB2 family protein compare
DZA65_RS15550 -0.7 -4.0 Fe(3+)-siderophore ABC transporter permease compare
DZA65_RS04015 -0.7 -2.6 hypothetical protein compare
DZA65_RS22695 -0.7 -3.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DZA65_RS16440 -0.7 -2.0 peptidase compare
DZA65_RS04370 -0.7 -2.7 cysteine synthase A compare
DZA65_RS09240 -0.7 -1.3 biotin carboxyl carrier domain-containing protein compare
DZA65_RS21115 -0.7 -4.0 class I adenylate cyclase compare
DZA65_RS13645 -0.7 -2.8 beta-ketoacyl-ACP synthase II compare
DZA65_RS08855 -0.7 -1.3 hypothetical protein compare
DZA65_RS22225 -0.7 -1.0 Der GTPase-activating protein YihI compare
DZA65_RS19160 -0.7 -1.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DZA65_RS04215 -0.7 -1.8 SsrA-binding protein SmpB compare
DZA65_RS18600 -0.7 -1.0 DUF1330 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola ME23 in plant experiments

For plant cv.Atlantic across organisms