Experiment setATCH174 for Dickeya dianthicola ME23

Compare to:

Atlantic

200 most important genes:

  gene name fitness t score description  
DZA65_RS05310 -3.6 -9.4 thymidylate synthase compare
DZA65_RS11720 -3.2 -7.8 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DZA65_RS06895 -3.1 -5.9 Tol-Pal system protein TolQ compare
DZA65_RS00800 -2.9 -6.1 O-antigen ligase family protein compare
DZA65_RS02490 -2.8 -8.9 phosphoserine phosphatase compare
DZA65_RS10905 -2.7 -7.0 TonB system transport protein TonB compare
DZA65_RS07120 -2.7 -3.5 dTDP-4-dehydrorhamnose 3,5-epimerase compare
DZA65_RS11865 -2.6 -5.8 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS15990 -2.4 -4.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
DZA65_RS19290 -2.3 -2.8 hypothetical protein compare
DZA65_RS01350 -2.3 -3.0 DNA-binding transcriptional regulator Fis compare
DZA65_RS20550 -2.2 -3.5 sulfurtransferase complex subunit TusC compare
DZA65_RS03260 -2.2 -7.3 lipoprotein NlpI compare
DZA65_RS12505 -2.1 -8.2 carboxy terminal-processing peptidase compare
DZA65_RS16610 -2.1 -11.7 IMP dehydrogenase compare
DZA65_RS13750 -2.1 -11.6 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS10585 -2.0 -5.1 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DZA65_RS09455 -2.0 -5.7 DUF3413 domain-containing protein compare
DZA65_RS13755 -2.0 -7.9 glucan biosynthesis protein G compare
DZA65_RS21790 -2.0 -3.2 sulfurtransferase TusA compare
DZA65_RS21090 -2.0 -2.4 tyrosine recombinase XerC compare
DZA65_RS18650 -2.0 -4.6 alanine racemase compare
DZA65_RS19215 -1.9 -4.7 3-isopropylmalate dehydratase small subunit compare
DZA65_RS06660 -1.9 -3.1 tRNA-Met compare
DZA65_RS03635 -1.8 -5.3 sugar transferase compare
DZA65_RS15995 -1.7 -7.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
DZA65_RS16090 -1.7 -1.8 sulfurtransferase TusE compare
DZA65_RS19210 -1.6 -9.9 3-isopropylmalate dehydratase large subunit compare
DZA65_RS06990 -1.6 -9.9 UDP-glucose 4-epimerase GalE compare
DZA65_RS21825 -1.6 -12.2 sugar kinase compare
DZA65_RS10485 -1.6 -4.9 membrane protein compare
DZA65_RS19350 -1.6 -3.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
DZA65_RS11360 -1.6 -6.4 fumarate/nitrate reduction transcriptional regulator Fnr compare
DZA65_RS10810 -1.6 -7.8 formyltetrahydrofolate deformylase compare
DZA65_RS06820 -1.5 -3.0 citrate synthase compare
DZA65_RS19205 -1.5 -9.2 3-isopropylmalate dehydrogenase compare
DZA65_RS10945 -1.5 -8.0 tryptophan synthase subunit beta compare
DZA65_RS05500 -1.5 -3.5 molecular chaperone Skp compare
DZA65_RS01260 -1.4 -9.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DZA65_RS21800 -1.4 -2.0 DcrB family lipoprotein compare
DZA65_RS19685 -1.4 -2.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
DZA65_RS19475 -1.4 -4.8 threonine synthase compare
DZA65_RS06470 -1.4 -5.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DZA65_RS10915 -1.4 -5.7 septation protein A compare
DZA65_RS06420 -1.4 -7.3 phosphoribosylformylglycinamidine cyclo-ligase compare
DZA65_RS09910 -1.4 -3.8 thioredoxin-disulfide reductase compare
DZA65_RS20875 -1.4 -3.1 Fe-S biogenesis protein NfuA compare
DZA65_RS19655 -1.3 -2.5 adenylosuccinate synthase compare
DZA65_RS12020 -1.3 -4.4 ribonuclease toxin immunity protein CdiI compare
DZA65_RS16830 -1.3 -11.0 phosphoribosylformylglycinamidine synthase compare
DZA65_RS13880 -1.3 -5.3 flagellar export chaperone FliS compare
DZA65_RS19200 -1.3 -10.1 2-isopropylmalate synthase compare
DZA65_RS03670 -1.3 -4.3 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
DZA65_RS15280 -1.3 -4.9 acetate kinase compare
DZA65_RS10965 -1.3 -7.9 anthranilate synthase component 1 compare
DZA65_RS19540 -1.3 -4.8 phosphoglycerate dehydrogenase compare
DZA65_RS22635 -1.2 -3.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
DZA65_RS02945 -1.2 -2.7 transcriptional regulator ExuR compare
DZA65_RS01510 -1.2 -4.7 RNA polymerase factor sigma-54 compare
DZA65_RS11655 -1.2 -8.5 TerC family protein compare
DZA65_RS04355 -1.2 -7.1 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DZA65_RS21420 -1.2 -8.8 glutamate racemase compare
DZA65_RS10940 -1.2 -5.6 tryptophan synthase subunit alpha compare
DZA65_RS22005 -1.2 -6.7 inorganic phosphate transporter PitA compare
DZA65_RS22195 -1.2 -6.6 ribosome-dependent GTPase TypA compare
DZA65_RS21270 -1.2 -8.9 ATP-dependent RNA helicase RhlB compare
DZA65_RS02505 -1.2 -2.4 peptide chain release factor 3 compare
DZA65_RS01920 -1.2 -2.9 DUF1311 domain-containing protein compare
DZA65_RS13030 -1.2 -7.1 orotidine-5'-phosphate decarboxylase compare
DZA65_RS21265 -1.1 -2.7 thioredoxin TrxA compare
DZA65_RS15370 -1.1 -4.3 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS11715 -1.1 -6.9 5-dehydro-4-deoxy-D-glucuronate isomerase compare
DZA65_RS05165 -1.1 -1.4 hypothetical protein compare
DZA65_RS13330 -1.1 -4.4 AI-2E family transporter YdiK compare
DZA65_RS19745 -1.1 -6.1 GDP-L-fucose synthase compare
DZA65_RS19740 -1.1 -5.4 ABC transporter ATP-binding protein compare
DZA65_RS01790 -1.1 -7.2 tol-pal system-associated acyl-CoA thioesterase compare
DZA65_RS16670 -1.1 -3.4 nucleoside-diphosphate kinase compare
DZA65_RS22210 -1.1 -6.3 nitrogen regulation protein NR(I) compare
DZA65_RS13875 -1.1 -7.0 flagellar filament capping protein FliD compare
DZA65_RS11435 -1.1 -3.5 redox-regulated ATPase YchF compare
DZA65_RS20355 -1.1 -4.1 Trk system potassium transporter TrkA compare
DZA65_RS00810 -1.0 -2.0 putative lipopolysaccharide heptosyltransferase III compare
DZA65_RS15335 -1.0 -8.2 amidophosphoribosyltransferase compare
DZA65_RS10980 -1.0 -3.4 23S rRNA pseudouridine(2605) synthase RluB compare
DZA65_RS11020 -1.0 -6.1 HTH-type transcriptional regulator CysB compare
DZA65_RS16960 -1.0 -2.3 tRNA-Ala compare
DZA65_RS13390 -1.0 -5.5 quinone-dependent dihydroorotate dehydrogenase compare
DZA65_RS04215 -1.0 -3.0 SsrA-binding protein SmpB compare
DZA65_RS05855 -1.0 -4.6 tRNA guanosine(34) transglycosylase Tgt compare
DZA65_RS01255 -1.0 -6.6 phosphoribosylamine--glycine ligase compare
DZA65_RS10680 -1.0 -2.4 phage holin, lambda family compare
DZA65_RS05860 -1.0 -2.7 preprotein translocase subunit YajC compare
DZA65_RS01525 -1.0 -3.1 LPS export ABC transporter periplasmic protein LptC compare
DZA65_RS00740 -1.0 -1.7 nucleoid occlusion factor SlmA compare
DZA65_RS18320 -1.0 -4.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DZA65_RS10955 -1.0 -3.3 anthranilate phosphoribosyltransferase compare
DZA65_RS21275 -1.0 -5.8 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
DZA65_RS13710 -1.0 -5.9 dihydroorotase compare
DZA65_RS10950 -1.0 -5.0 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DZA65_RS21860 -1.0 -1.5 cellulose synthase compare
DZA65_RS21115 -1.0 -5.4 class I adenylate cyclase compare
DZA65_RS22735 -1.0 -1.6 hypothetical protein compare
DZA65_RS18550 -1.0 -5.8 diaminopimelate decarboxylase compare
DZA65_RS15285 -1.0 -4.1 phosphate acetyltransferase compare
DZA65_RS06900 -1.0 -0.9 colicin uptake protein TolR compare
DZA65_RS13645 -1.0 -3.7 beta-ketoacyl-ACP synthase II compare
DZA65_RS06565 -1.0 -2.2 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
DZA65_RS13085 -0.9 -3.1 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS22360 -0.9 -7.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DZA65_RS19160 -0.9 -2.2 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DZA65_RS20560 -0.9 -3.5 transcriptional regulator compare
DZA65_RS00360 -0.9 -4.1 MarR family transcriptional regulator compare
DZA65_RS07125 -0.9 -5.8 dTDP-4-dehydrorhamnose reductase compare
DZA65_RS21510 -0.9 -6.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
DZA65_RS18160 -0.9 -1.5 glycerate kinase compare
DZA65_RS19380 -0.9 -7.1 carbamoyl-phosphate synthase large subunit compare
DZA65_RS15580 -0.9 -4.8 enterochelin esterase compare
DZA65_RS16715 -0.9 -1.0 Fe-S cluster assembly scaffold IscU compare
DZA65_RS07180 -0.9 -4.8 NADP-dependent phosphogluconate dehydrogenase compare
DZA65_RS09010 -0.9 -2.9 cyclic pyranopterin monophosphate synthase MoaC compare
DZA65_RS00790 -0.9 -1.2 glycosyltransferase family 4 protein compare
DZA65_RS06510 -0.9 -1.3 transcription antiterminator/RNA stability regulator CspE compare
DZA65_RS17875 -0.9 -3.4 glycine betaine/L-proline ABC transporter ATP-binding protein ProV compare
DZA65_RS21445 -0.9 -3.0 Si-specific NAD(P)(+) transhydrogenase compare
DZA65_RS03625 -0.8 -7.0 polysaccharide biosynthesis protein compare
DZA65_RS18080 -0.8 -2.0 phosphoadenylyl-sulfate reductase compare
DZA65_RS15540 -0.8 -4.9 Fe2+-enterobactin ABC transporter substrate-binding protein compare
DZA65_RS12945 -0.8 -3.0 phage shock protein PspA compare
DZA65_RS19495 -0.8 -1.2 two-component system response regulator ArcA compare
DZA65_RS21075 -0.8 -2.8 magnesium/cobalt transporter CorA compare
DZA65_RS09810 -0.8 -1.9 DUF2593 family protein compare
DZA65_RS19670 -0.8 -2.0 FtsH protease activity modulator HflK compare
DZA65_RS11395 -0.8 -1.7 peptide chain release factor N(5)-glutamine methyltransferase compare
DZA65_RS01795 -0.8 -2.5 TonB system transport protein ExbD compare
DZA65_RS15520 -0.8 -3.4 tRNA-Arg compare
DZA65_RS19385 -0.8 -4.8 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DZA65_RS20775 -0.8 -1.2 DUF2531 family protein compare
DZA65_RS22240 -0.8 -4.5 thiol:disulfide interchange protein DsbA compare
DZA65_RS09035 -0.8 -2.3 ABC transporter ATP-binding protein compare
DZA65_RS11915 -0.8 -1.5 ferrous iron transport protein A compare
DZA65_RS11390 -0.8 -2.9 tetratricopeptide repeat-containing protein compare
DZA65_RS00795 -0.8 -4.0 glycosyltransferase family 9 protein compare
DZA65_RS16705 -0.8 -2.5 co-chaperone HscB compare
DZA65_RS05885 -0.8 -3.2 transcriptional regulator NrdR compare
DZA65_RS08145 -0.7 -2.2 type II toxin-antitoxin system HicA family toxin compare
DZA65_RS20905 -0.7 -1.4 glycerol-3-phosphate dehydrogenase compare
DZA65_RS21080 -0.7 -3.9 DNA helicase II compare
DZA65_RS19260 -0.7 -2.6 thiamine ABC transporter ATP-binding protein ThiQ compare
DZA65_RS09970 -0.7 -4.2 pyruvate formate lyase 1-activating protein compare
DZA65_RS17345 -0.7 -5.1 bifunctional chorismate mutase/prephenate dehydratase compare
DZA65_RS07315 -0.7 -3.0 transposase compare
DZA65_RS17985 -0.7 -1.9 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
DZA65_RS16910 -0.7 -3.8 elongation factor 4 compare
DZA65_RS16785 -0.7 -3.0 pectate lyase compare
DZA65_RS01970 -0.7 -5.2 aspartate carbamoyltransferase compare
DZA65_RS10755 -0.7 -3.1 peptide-methionine (R)-S-oxide reductase MsrB compare
DZA65_RS11525 -0.7 -2.1 hypothetical protein compare
DZA65_RS00970 -0.7 -2.2 twin-arginine translocase subunit TatA compare
DZA65_RS21610 -0.7 -3.0 envelope stress response regulator transcription factor CpxR compare
DZA65_RS11900 -0.7 -0.9 hypothetical protein compare
DZA65_RS22965 -0.7 -1.3 hypothetical protein compare
DZA65_RS08800 -0.7 -3.7 helix-turn-helix transcriptional regulator compare
DZA65_RS06985 -0.7 -1.8 galactose-1-phosphate uridylyltransferase compare
DZA65_RS18085 -0.7 -4.8 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
DZA65_RS05175 -0.7 -1.7 hypothetical protein compare
DZA65_RS13670 -0.7 -2.8 phosphate acyltransferase PlsX compare
DZA65_RS05840 -0.7 -1.5 peroxiredoxin C compare
DZA65_RS06115 -0.7 -5.8 multidrug efflux RND transporter permease subunit compare
DZA65_RS21095 -0.7 -3.3 DUF484 domain-containing protein compare
DZA65_RS19460 -0.7 -3.3 molybdopterin adenylyltransferase compare
DZA65_RS01370 -0.7 -1.0 YhdT family protein compare
DZA65_RS01550 -0.7 -3.2 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
DZA65_RS15100 -0.7 -2.4 hypothetical protein compare
DZA65_RS01530 -0.7 -5.0 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DZA65_RS07460 -0.7 -2.8 SDR family oxidoreductase compare
DZA65_RS06465 -0.7 -4.1 outer membrane protein assembly factor BamC compare
DZA65_RS21310 -0.6 -4.7 ketol-acid reductoisomerase compare
DZA65_RS03335 -0.6 -2.5 YggS family pyridoxal phosphate-dependent enzyme compare
DZA65_RS21335 -0.6 -4.7 dihydroxy-acid dehydratase compare
DZA65_RS16945 -0.6 -4.5 ATP-dependent RNA helicase SrmB compare
DZA65_RS22695 -0.6 -3.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DZA65_RS14415 -0.6 -1.1 IS4 family transposase compare
DZA65_RS20545 -0.6 -1.2 sulfurtransferase complex subunit TusB compare
DZA65_RS09460 -0.6 -1.5 YejL family protein compare
DZA65_RS10030 -0.6 -1.9 imidazole glycerol phosphate synthase subunit HisF compare
DZA65_RS06980 -0.6 -3.2 galactokinase compare
DZA65_RS09990 -0.6 -1.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
DZA65_RS02870 -0.6 -1.3 chorismate lyase compare
DZA65_RS07110 -0.6 -3.1 dTDP-glucose 4,6-dehydratase compare
DZA65_RS13435 -0.6 -4.2 porin compare
DZA65_RS06120 -0.6 -4.5 efflux RND transporter periplasmic adaptor subunit compare
DZA65_RS17400 -0.6 -2.8 glutamate--cysteine ligase compare
DZA65_RS01545 -0.6 -2.2 phospholipid ABC transporter ATP-binding protein MlaF compare
DZA65_RS15345 -0.6 -3.9 cell division protein DedD compare
DZA65_RS04030 -0.6 -1.8 hypothetical protein compare
DZA65_RS11530 -0.6 -1.6 hemagglutinin compare
DZA65_RS15200 -0.6 -1.2 hypothetical protein compare
DZA65_RS00735 -0.6 -2.8 orotate phosphoribosyltransferase compare
DZA65_RS07030 -0.6 -3.0 6-phosphogluconolactonase compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola ME23 in plant experiments

For plant cv.Atlantic across organisms