Experiment setATCH173 for Dickeya dianthicola ME23

Compare to:

Atlantic

200 most important genes:

  gene name fitness t score description  
DZA65_RS05310 -3.4 -8.9 thymidylate synthase compare
DZA65_RS06895 -2.9 -6.9 Tol-Pal system protein TolQ compare
DZA65_RS10940 -2.8 -9.9 tryptophan synthase subunit alpha compare
DZA65_RS06900 -2.7 -2.4 colicin uptake protein TolR compare
DZA65_RS18650 -2.7 -5.4 alanine racemase compare
DZA65_RS12660 -2.6 -3.7 phage tail assembly protein compare
DZA65_RS10950 -2.6 -10.6 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DZA65_RS10965 -2.5 -12.8 anthranilate synthase component 1 compare
DZA65_RS10585 -2.4 -7.4 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DZA65_RS00800 -2.3 -3.4 O-antigen ligase family protein compare
DZA65_RS22735 -2.3 -3.1 hypothetical protein compare
DZA65_RS10945 -2.2 -10.4 tryptophan synthase subunit beta compare
DZA65_RS19085 -2.2 -2.5 secA regulator SecM compare
DZA65_RS02505 -2.1 -3.6 peptide chain release factor 3 compare
DZA65_RS02490 -2.1 -9.1 phosphoserine phosphatase compare
DZA65_RS10960 -2.0 -4.4 C26 family cysteine hydrolase domain-containing family compare
DZA65_RS00790 -2.0 -2.7 glycosyltransferase family 4 protein compare
DZA65_RS01350 -2.0 -2.9 DNA-binding transcriptional regulator Fis compare
DZA65_RS12505 -2.0 -6.4 carboxy terminal-processing peptidase compare
DZA65_RS13750 -1.9 -10.3 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS16610 -1.9 -11.0 IMP dehydrogenase compare
DZA65_RS10485 -1.9 -5.8 membrane protein compare
DZA65_RS09015 -1.9 -1.6 molybdopterin synthase sulfur carrier subunit compare
DZA65_RS03210 -1.8 -1.9 preprotein translocase subunit SecG compare
DZA65_RS11435 -1.8 -3.7 redox-regulated ATPase YchF compare
DZA65_RS18320 -1.7 -6.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DZA65_RS19540 -1.7 -7.0 phosphoglycerate dehydrogenase compare
DZA65_RS19290 -1.7 -2.9 hypothetical protein compare
DZA65_RS20550 -1.7 -3.0 sulfurtransferase complex subunit TusC compare
DZA65_RS07120 -1.7 -2.3 dTDP-4-dehydrorhamnose 3,5-epimerase compare
DZA65_RS21265 -1.7 -2.6 thioredoxin TrxA compare
DZA65_RS03670 -1.7 -4.6 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
DZA65_RS10955 -1.6 -3.4 anthranilate phosphoribosyltransferase compare
DZA65_RS01370 -1.6 -2.5 YhdT family protein compare
DZA65_RS10915 -1.6 -5.8 septation protein A compare
DZA65_RS11020 -1.6 -8.3 HTH-type transcriptional regulator CysB compare
DZA65_RS09910 -1.5 -4.1 thioredoxin-disulfide reductase compare
DZA65_RS13755 -1.5 -5.8 glucan biosynthesis protein G compare
DZA65_RS07125 -1.5 -8.6 dTDP-4-dehydrorhamnose reductase compare
DZA65_RS15200 -1.5 -2.1 hypothetical protein compare
DZA65_RS00360 -1.5 -6.3 MarR family transcriptional regulator compare
DZA65_RS20545 -1.5 -2.8 sulfurtransferase complex subunit TusB compare
DZA65_RS11865 -1.5 -4.1 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS19200 -1.4 -10.1 2-isopropylmalate synthase compare
DZA65_RS10905 -1.4 -5.3 TonB system transport protein TonB compare
DZA65_RS19215 -1.4 -3.8 3-isopropylmalate dehydratase small subunit compare
DZA65_RS06470 -1.4 -5.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DZA65_RS19475 -1.4 -4.4 threonine synthase compare
DZA65_RS11655 -1.4 -8.8 TerC family protein compare
DZA65_RS05860 -1.3 -2.5 preprotein translocase subunit YajC compare
DZA65_RS19210 -1.3 -8.2 3-isopropylmalate dehydratase large subunit compare
DZA65_RS16090 -1.3 -1.7 sulfurtransferase TusE compare
DZA65_RS01525 -1.3 -2.7 LPS export ABC transporter periplasmic protein LptC compare
DZA65_RS17345 -1.3 -7.5 bifunctional chorismate mutase/prephenate dehydratase compare
DZA65_RS15995 -1.3 -5.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
DZA65_RS09240 -1.2 -1.5 biotin carboxyl carrier domain-containing protein compare
DZA65_RS00810 -1.2 -2.9 putative lipopolysaccharide heptosyltransferase III compare
DZA65_RS11720 -1.2 -4.6 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DZA65_RS10050 -1.2 -4.1 histidinol-phosphate transaminase compare
DZA65_RS00365 -1.2 -6.0 DMT family transporter compare
DZA65_RS16670 -1.2 -3.3 nucleoside-diphosphate kinase compare
DZA65_RS16635 -1.2 -1.9 outer membrane protein assembly factor BamB compare
DZA65_RS06020 -1.2 -5.3 endopeptidase La compare
DZA65_RS14515 -1.2 -1.7 transposase compare
DZA65_RS03635 -1.2 -5.4 sugar transferase compare
DZA65_RS03405 -1.2 -1.3 tRNA-Leu compare
DZA65_RS19205 -1.2 -7.8 3-isopropylmalate dehydrogenase compare
DZA65_RS13085 -1.2 -3.5 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS16265 -1.2 -2.1 hypothetical protein compare
DZA65_RS21335 -1.2 -7.7 dihydroxy-acid dehydratase compare
DZA65_RS03410 -1.2 -2.0 tRNA-Leu compare
DZA65_RS14835 -1.1 -1.6 N-acetyltransferase compare
DZA65_RS13875 -1.1 -6.8 flagellar filament capping protein FliD compare
DZA65_RS13230 -1.1 -1.4 DUF1471 domain-containing protein compare
DZA65_RS01785 -1.1 -7.0 cystathionine beta-lyase compare
DZA65_RS03605 -1.1 -1.4 cation efflux system protein CusF compare
DZA65_RS01260 -1.1 -6.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DZA65_RS06510 -1.1 -1.1 transcription antiterminator/RNA stability regulator CspE compare
DZA65_RS13390 -1.1 -5.7 quinone-dependent dihydroorotate dehydrogenase compare
DZA65_RS05500 -1.1 -2.3 molecular chaperone Skp compare
DZA65_RS03230 -1.1 -0.9 transcription termination/antitermination protein NusA compare
DZA65_RS06335 -1.1 -2.3 DUF1778 domain-containing protein compare
DZA65_RS21610 -1.1 -4.1 envelope stress response regulator transcription factor CpxR compare
DZA65_RS19740 -1.0 -4.0 ABC transporter ATP-binding protein compare
DZA65_RS19090 -1.0 -2.8 DUF721 domain-containing protein compare
DZA65_RS04700 -1.0 -1.4 transposase compare
DZA65_RS00795 -1.0 -4.1 glycosyltransferase family 9 protein compare
DZA65_RS21310 -1.0 -6.6 ketol-acid reductoisomerase compare
DZA65_RS10810 -1.0 -4.7 formyltetrahydrofolate deformylase compare
DZA65_RS01020 -1.0 -1.3 YeeE/YedE family protein compare
DZA65_RS13710 -1.0 -6.5 dihydroorotase compare
DZA65_RS19480 -1.0 -2.4 homoserine kinase compare
DZA65_RS14355 -1.0 -1.8 TraR/DksA family transcriptional regulator compare
DZA65_RS02200 -1.0 -1.6 hypothetical protein compare
DZA65_RS01920 -1.0 -3.0 DUF1311 domain-containing protein compare
DZA65_RS21270 -1.0 -7.1 ATP-dependent RNA helicase RhlB compare
DZA65_RS22195 -1.0 -4.9 ribosome-dependent GTPase TypA compare
DZA65_RS08845 -1.0 -2.7 hypothetical protein compare
DZA65_RS13880 -1.0 -3.1 flagellar export chaperone FliS compare
DZA65_RS09455 -1.0 -2.3 DUF3413 domain-containing protein compare
DZA65_RS21825 -0.9 -6.9 sugar kinase compare
DZA65_RS13435 -0.9 -6.4 porin compare
DZA65_RS15370 -0.9 -2.9 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS20275 -0.9 -6.1 homoserine O-succinyltransferase compare
DZA65_RS21790 -0.9 -1.3 sulfurtransferase TusA compare
DZA65_RS06990 -0.9 -6.6 UDP-glucose 4-epimerase GalE compare
DZA65_RS21575 -0.9 -1.7 6-phosphofructokinase compare
DZA65_RS07110 -0.9 -4.0 dTDP-glucose 4,6-dehydratase compare
DZA65_RS08140 -0.9 -1.8 type II toxin-antitoxin system HicB family antitoxin compare
DZA65_RS21420 -0.9 -6.0 glutamate racemase compare
DZA65_RS06660 -0.9 -1.7 tRNA-Met compare
DZA65_RS06100 -0.9 -3.7 Hha toxicity modulator TomB compare
DZA65_RS12020 -0.9 -3.4 ribonuclease toxin immunity protein CdiI compare
DZA65_RS02940 -0.9 -3.5 DedA family protein compare
DZA65_RS02245 -0.9 -1.5 transketolase compare
DZA65_RS11900 -0.9 -0.9 hypothetical protein compare
DZA65_RS16830 -0.9 -7.0 phosphoribosylformylglycinamidine synthase compare
DZA65_RS01255 -0.9 -4.9 phosphoribosylamine--glycine ligase compare
DZA65_RS12945 -0.9 -3.1 phage shock protein PspA compare
DZA65_RS07680 -0.9 -3.0 transcriptional regulator compare
DZA65_RS04370 -0.9 -3.7 cysteine synthase A compare
DZA65_RS06420 -0.8 -5.1 phosphoribosylformylglycinamidine cyclo-ligase compare
DZA65_RS22145 -0.8 -1.1 DNA-directed RNA polymerase subunit omega compare
DZA65_RS14000 -0.8 -4.5 flagellar hook assembly protein FlgD compare
DZA65_RS18600 -0.8 -1.2 DUF1330 domain-containing protein compare
DZA65_RS03495 -0.8 -4.0 single-stranded-DNA-specific exonuclease RecJ compare
DZA65_RS05840 -0.8 -1.2 peroxiredoxin C compare
DZA65_RS08910 -0.8 -2.6 flavodoxin family protein compare
DZA65_RS03260 -0.8 -2.3 lipoprotein NlpI compare
DZA65_RS07895 -0.8 -2.8 ABC transporter ATP-binding protein compare
DZA65_RS07560 -0.8 -1.4 type II toxin-antitoxin system CcdA family antitoxin compare
DZA65_RS16045 -0.8 -3.2 polyphosphate kinase 1 compare
DZA65_RS18080 -0.8 -2.4 phosphoadenylyl-sulfate reductase compare
DZA65_RS16925 -0.8 -1.1 anti-sigma-E factor RseA compare
DZA65_RS00740 -0.8 -1.2 nucleoid occlusion factor SlmA compare
DZA65_RS21545 -0.8 -1.8 DUF805 domain-containing protein compare
DZA65_RS00535 -0.8 -2.3 helix-turn-helix transcriptional regulator compare
DZA65_RS04230 -0.8 -4.0 outer membrane protein assembly factor BamE compare
DZA65_RS10980 -0.8 -2.4 23S rRNA pseudouridine(2605) synthase RluB compare
DZA65_RS13570 -0.8 -1.9 glycine zipper 2TM domain-containing protein compare
DZA65_RS19745 -0.8 -4.1 GDP-L-fucose synthase compare
DZA65_RS19195 -0.8 -2.2 leu operon leader peptide compare
DZA65_RS05885 -0.8 -3.2 transcriptional regulator NrdR compare
DZA65_RS01275 -0.8 -1.5 23S ribosomal RNA compare
DZA65_RS18060 -0.8 -3.3 adenylyl-sulfate kinase compare
DZA65_RS20195 -0.8 -2.4 fumarate reductase subunit FrdD compare
DZA65_RS22975 -0.8 -1.3 hypothetical protein compare
DZA65_RS15285 -0.8 -2.8 phosphate acetyltransferase compare
DZA65_RS19725 -0.8 -5.8 phosphomannomutase/phosphoglucomutase compare
DZA65_RS18550 -0.8 -4.3 diaminopimelate decarboxylase compare
DZA65_RS07980 -0.8 -1.5 phosphonate C-P lyase system protein PhnL compare
DZA65_RS22445 -0.8 -4.4 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
DZA65_RS22005 -0.8 -4.1 inorganic phosphate transporter PitA compare
DZA65_RS19485 -0.7 -4.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
DZA65_RS05855 -0.7 -3.6 tRNA guanosine(34) transglycosylase Tgt compare
DZA65_RS15605 -0.7 -1.7 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
DZA65_RS09570 -0.7 -2.0 1-phosphofructokinase compare
DZA65_RS03570 -0.7 -3.4 hypothetical protein compare
DZA65_RS00685 -0.7 -2.6 P1 family peptidase compare
DZA65_RS10505 -0.7 -2.4 dihydroneopterin triphosphate diphosphatase compare
DZA65_RS00845 -0.7 -1.5 protein-export chaperone SecB compare
DZA65_RS14415 -0.7 -1.1 IS4 family transposase compare
DZA65_RS01910 -0.7 -2.6 Hcp family type VI secretion system effector compare
DZA65_RS13110 -0.7 -0.7 DUF1289 domain-containing protein compare
DZA65_RS13485 -0.7 -2.0 endopeptidase compare
DZA65_RS13985 -0.7 -3.4 flagellar basal-body rod protein FlgG compare
DZA65_RS07180 -0.7 -3.9 NADP-dependent phosphogluconate dehydrogenase compare
DZA65_RS17115 -0.7 -2.0 bifunctional glycosyl transferase/transpeptidase compare
DZA65_RS13975 -0.7 -4.1 flagellar basal body P-ring protein FlgI compare
DZA65_RS15625 -0.7 -2.0 membrane protein YpdK compare
DZA65_RS22360 -0.7 -5.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DZA65_RS14030 -0.7 -2.4 flagellar protein FlhE compare
DZA65_RS09375 -0.7 -0.9 type II toxin-antitoxin system RelE/ParE family toxin compare
DZA65_RS00870 -0.7 -3.7 HTH-type transcriptional regulator MetR compare
DZA65_RS02945 -0.7 -1.2 transcriptional regulator ExuR compare
DZA65_RS06445 -0.7 -4.0 M48 family metallopeptidase compare
DZA65_RS18085 -0.7 -4.3 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
DZA65_RS16705 -0.7 -2.0 co-chaperone HscB compare
DZA65_RS07065 -0.7 -1.7 dCTP deaminase compare
DZA65_RS19730 -0.7 -5.0 GDP-mannose 4,6-dehydratase compare
DZA65_RS11550 -0.7 -2.2 fatty acid metabolism transcriptional regulator FadR compare
DZA65_RS21470 -0.7 -4.0 cystathionine gamma-synthase compare
DZA65_RS11260 -0.7 -3.3 hypothetical protein compare
DZA65_RS13030 -0.7 -3.8 orotidine-5'-phosphate decarboxylase compare
DZA65_RS01795 -0.6 -2.1 TonB system transport protein ExbD compare
DZA65_RS13040 -0.6 -1.3 LapA family protein compare
DZA65_RS19665 -0.6 -1.4 protease modulator HflC compare
DZA65_RS18405 -0.6 -4.6 ribonuclease R compare
DZA65_RS18075 -0.6 -3.3 uroporphyrinogen-III C-methyltransferase compare
DZA65_RS07525 -0.6 -3.2 IS481 family transposase compare
DZA65_RS04355 -0.6 -3.8 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DZA65_RS01005 -0.6 -1.8 NAD(P)H-flavin reductase compare
DZA65_RS19350 -0.6 -1.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
DZA65_RS13125 -0.6 -1.7 Grx4 family monothiol glutaredoxin compare
DZA65_RS14025 -0.6 -2.1 flagella synthesis chaperone protein FlgN compare
DZA65_RS03525 -0.6 -1.3 hypothetical protein compare
DZA65_RS15335 -0.6 -4.4 amidophosphoribosyltransferase compare
DZA65_RS12975 -0.6 -2.4 peptide ABC transporter ATP-binding protein SapF compare
DZA65_RS18470 -0.6 -2.9 GNAT family N-acetyltransferase compare
DZA65_RS06150 -0.6 -2.9 adenine phosphoribosyltransferase compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola ME23 in plant experiments

For plant cv.Atlantic across organisms