Experiment setATCH173 for Dickeya dianthicola ME23

Compare to:

Atlantic

200 most detrimental genes:

  gene name fitness t score description  
DZA65_RS01320 +1.4 2.5 ASCH domain-containing protein compare
DZA65_RS06145 +1.1 2.5 DUF454 family protein compare
DZA65_RS10320 +1.1 2.4 molecular chaperone compare
DZA65_RS06800 +1.1 2.0 type 2 GTP cyclohydrolase I compare
DZA65_RS10780 +1.1 3.3 NAD(P)H nitroreductase compare
DZA65_RS05295 +1.0 1.8 RNA pyrophosphohydrolase compare
DZA65_RS10305 +0.9 2.0 ATP-binding protein compare
DZA65_RS00160 +0.9 3.4 putative FMN-dependent luciferase-like monooxygenase compare
DZA65_RS00530 +0.9 1.2 DUF1471 domain-containing protein compare
DZA65_RS22965 +0.9 1.8 hypothetical protein compare
DZA65_RS16460 +0.9 2.1 hypothetical protein compare
DZA65_RS06475 +0.8 2.4 DUF441 domain-containing protein compare
DZA65_RS02810 +0.8 2.3 transcriptional regulator compare
DZA65_RS22025 +0.8 1.7 DUF1471 domain-containing protein compare
DZA65_RS08750 +0.8 1.8 DUF1971 domain-containing protein compare
DZA65_RS14330 +0.8 2.7 helix-turn-helix transcriptional regulator compare
DZA65_RS17845 +0.8 2.2 oxalurate catabolism protein HpxZ compare
DZA65_RS16625 +0.8 2.3 hypothetical protein compare
DZA65_RS13380 +0.8 3.2 MOSC domain-containing protein compare
DZA65_RS14335 +0.8 2.9 transcriptional regulator compare
DZA65_RS06245 +0.8 2.3 2Fe-2S ferredoxin-like protein compare
DZA65_RS08425 +0.8 1.3 malonate decarboxylase acyl carrier protein compare
DZA65_RS11050 +0.7 2.3 electron transport complex subunit RsxB compare
DZA65_RS03345 +0.7 1.6 cysteine synthase family protein compare
DZA65_RS05650 +0.7 3.0 hypothetical protein compare
DZA65_RS14135 +0.7 1.4 glycoside hydrolase family protein compare
DZA65_RS12870 +0.7 2.1 murein tripeptide amidase MpaA compare
DZA65_RS07635 +0.7 1.1 TrbC/VirB2 family protein compare
DZA65_RS06025 +0.7 1.5 DNA-binding protein HU-beta compare
DZA65_RS05095 +0.7 2.1 IS3 family transposase compare
DZA65_RS16015 +0.7 1.2 IS200/IS605 family transposase compare
DZA65_RS18975 +0.6 0.7 helix-turn-helix transcriptional regulator compare
DZA65_RS16785 +0.6 2.5 pectate lyase compare
DZA65_RS14785 +0.6 3.0 efflux RND transporter periplasmic adaptor subunit compare
DZA65_RS14245 +0.6 1.1 acyl carrier protein compare
DZA65_RS04105 +0.6 1.7 phage tail protein compare
DZA65_RS01710 +0.6 0.7 outer membrane channel protein TolC compare
DZA65_RS00415 +0.6 4.1 ABC transporter ATP-binding protein compare
DZA65_RS06885 +0.6 2.2 cyd operon protein YbgE compare
DZA65_RS02095 +0.6 0.6 helix-turn-helix transcriptional regulator compare
DZA65_RS04290 +0.6 1.5 N-glycosyltransferase compare
DZA65_RS09380 +0.6 2.4 hypothetical protein compare
DZA65_RS22970 +0.6 1.2 protein MgtS compare
DZA65_RS17810 +0.6 1.8 amino acid ABC transporter permease compare
DZA65_RS19515 +0.6 3.4 non-canonical purine NTP phosphatase compare
DZA65_RS21615 +0.6 1.6 envelope stress sensor histidine kinase CpxA compare
DZA65_RS08245 +0.6 2.7 efflux RND transporter periplasmic adaptor subunit compare
DZA65_RS07250 +0.6 2.8 ABC transporter ATP-binding protein compare
DZA65_RS16245 +0.6 1.9 amino acid ABC transporter permease compare
DZA65_RS14350 +0.6 2.4 DUF2857 domain-containing protein compare
DZA65_RS08330 +0.6 1.5 ABC transporter permease subunit compare
DZA65_RS11245 +0.6 2.3 type I secretion system permease/ATPase compare
DZA65_RS05555 +0.6 2.1 YaeP family protein compare
DZA65_RS22885 +0.6 2.3 hypothetical protein compare
DZA65_RS12330 +0.5 1.9 TetR family transcriptional regulator compare
DZA65_RS17835 +0.5 0.9 oxalurate catabolism protein HpxX compare
DZA65_RS21830 +0.5 2.2 hypothetical protein compare
DZA65_RS05900 +0.5 0.9 transcription antitermination factor NusB compare
DZA65_RS08645 +0.5 1.5 DUF1272 domain-containing protein compare
DZA65_RS02465 +0.5 1.1 cell division protein ZapA compare
DZA65_RS13495 +0.5 2.6 glutathione peroxidase compare
DZA65_RS21050 +0.5 1.0 hypothetical protein compare
DZA65_RS04585 +0.5 2.6 HAMP domain-containing protein compare
DZA65_RS00425 +0.5 3.3 sigma-54-dependent Fis family transcriptional regulator compare
DZA65_RS03805 +0.5 1.3 GNAT family N-acetyltransferase compare
DZA65_RS03565 +0.5 1.7 HNH endonuclease compare
DZA65_RS16310 +0.5 2.1 hypothetical protein compare
DZA65_RS00430 +0.5 3.9 histidine kinase compare
DZA65_RS03145 +0.5 2.3 putative DNA-binding transcriptional regulator compare
DZA65_RS16870 +0.5 3.1 cyclic-guanylate-specific phosphodiesterase compare
DZA65_RS19005 +0.5 2.0 pyruvate dehydrogenase complex transcriptional repressor PdhR compare
DZA65_RS14010 +0.5 1.2 flagellar basal body rod protein FlgB compare
DZA65_RS03320 +0.5 1.6 purine-nucleoside phosphorylase compare
DZA65_RS08145 +0.5 1.6 type II toxin-antitoxin system HicA family toxin compare
DZA65_RS22410 +0.5 0.9 F0F1 ATP synthase subunit epsilon compare
DZA65_RS16380 +0.5 2.5 hypothetical protein compare
DZA65_RS11230 +0.5 3.0 serralysin family metalloprotease compare
DZA65_RS14470 +0.5 1.6 hypothetical protein compare
DZA65_RS09095 +0.5 0.8 hypothetical protein compare
DZA65_RS04625 +0.5 1.1 IS4 family transposase compare
DZA65_RS04875 +0.5 1.6 hypothetical protein compare
DZA65_RS14445 +0.5 1.3 hypothetical protein compare
DZA65_RS08855 +0.5 0.8 hypothetical protein compare
DZA65_RS11595 +0.5 0.8 cell division topological specificity factor MinE compare
DZA65_RS16710 +0.5 1.2 iron-sulfur cluster assembly protein IscA compare
DZA65_RS08540 +0.5 1.3 type VI secretion system contractile sheath small subunit compare
DZA65_RS00110 +0.5 1.2 PAS sensor domain-containing protein compare
DZA65_RS00675 +0.5 0.7 isoaspartyl peptidase/L-asparaginase compare
DZA65_RS12455 +0.5 1.6 nitrate reductase molybdenum cofactor assembly chaperone compare
DZA65_RS11210 +0.5 0.8 TetR family transcriptional regulator compare
DZA65_RS10295 +0.5 2.1 hypothetical protein compare
DZA65_RS12210 +0.4 2.9 type III secretion system export apparatus subunit SctV compare
DZA65_RS05775 +0.4 1.5 pyrimidine/purine nucleoside phosphorylase compare
DZA65_RS22650 +0.4 2.1 4-hydroxyphenylpyruvate dioxygenase compare
DZA65_RS21355 +0.4 0.9 ilv operon leader peptide compare
DZA65_RS10370 +0.4 1.5 DUF4255 domain-containing protein compare
DZA65_RS19790 +0.4 1.8 biotin attachment protein compare
DZA65_RS21710 +0.4 1.8 MFS transporter compare
DZA65_RS02085 +0.4 1.7 dNTP triphosphohydrolase compare
DZA65_RS20870 +0.4 1.5 DNA utilization protein GntX compare
DZA65_RS15565 +0.4 0.9 hypothetical protein compare
DZA65_RS06730 +0.4 1.4 LexA regulated protein compare
DZA65_RS06085 +0.4 2.0 MGMT family protein compare
DZA65_RS22930 +0.4 1.1 hypothetical protein compare
DZA65_RS12940 +0.4 1.8 envelope stress response membrane protein PspB compare
DZA65_RS17245 +0.4 1.4 tRNA-Asp compare
DZA65_RS12300 +0.4 2.3 amino acid ABC transporter permease compare
DZA65_RS22875 +0.4 0.4 hypothetical protein compare
DZA65_RS19775 +0.4 1.3 hypothetical protein compare
DZA65_RS08945 +0.4 2.0 CidB/LrgB family autolysis modulator compare
DZA65_RS05080 +0.4 1.6 hypothetical protein compare
DZA65_RS19495 +0.4 0.7 two-component system response regulator ArcA compare
DZA65_RS01650 +0.4 2.3 isoprenoid biosynthesis glyoxalase ElbB compare
DZA65_RS20865 +0.4 0.5 pimeloyl-ACP methyl ester esterase BioH compare
DZA65_RS10840 +0.4 2.5 thymidine kinase compare
DZA65_RS04295 +0.4 1.0 transcriptional regulator compare
DZA65_RS20065 +0.4 1.9 HlyD family efflux transporter periplasmic adaptor subunit compare
DZA65_RS09335 +0.4 1.8 protease inhibitor I42 family protein compare
DZA65_RS18910 +0.4 1.9 TIGR00730 family Rossman fold protein compare
DZA65_RS09810 +0.4 0.9 DUF2593 family protein compare
DZA65_RS13165 +0.4 2.4 winged helix-turn-helix transcriptional regulator compare
DZA65_RS09415 +0.4 1.2 hypothetical protein compare
DZA65_RS14310 +0.4 0.5 LysR family transcriptional regulator compare
DZA65_RS11500 +0.4 1.3 hypothetical protein compare
DZA65_RS03770 +0.4 1.8 HlyD family secretion protein compare
DZA65_RS18200 +0.4 0.8 hypothetical protein compare
DZA65_RS22990 +0.4 1.1 hypothetical protein compare
DZA65_RS13545 +0.4 1.9 arylamine N-acetyltransferase compare
DZA65_RS08325 +0.4 1.8 ATP-binding cassette domain-containing protein compare
DZA65_RS21745 +0.4 1.7 aspartate 1-decarboxylase autocleavage activator PanM compare
DZA65_RS02930 +0.4 1.8 DUF883 domain-containing protein compare
DZA65_RS01900 +0.4 1.5 ABC transporter permease compare
DZA65_RS09035 +0.4 1.4 ABC transporter ATP-binding protein compare
DZA65_RS04650 +0.4 2.1 transposase compare
DZA65_RS03185 +0.4 0.4 ribosome assembly RNA-binding protein YhbY compare
DZA65_RS01875 +0.4 1.2 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
DZA65_RS11560 +0.4 1.9 hypothetical protein compare
DZA65_RS19165 +0.4 1.0 division/cell wall cluster transcriptional repressor MraZ compare
DZA65_RS00345 +0.4 2.0 nickel/cobalt efflux protein RcnA compare
DZA65_RS06225 +0.4 2.2 copper-exporting P-type ATPase CopA compare
DZA65_RS05000 +0.4 1.7 hypothetical protein compare
DZA65_RS02240 +0.4 1.5 DeoR/GlpR transcriptional regulator compare
DZA65_RS06105 +0.4 1.5 50S ribosomal protein L36 compare
DZA65_RS18155 +0.4 2.5 two-component sensor histidine kinase BarA compare
DZA65_RS00410 +0.4 2.7 helix-turn-helix transcriptional regulator compare
DZA65_RS14405 +0.4 2.4 type IV secretion system protein compare
DZA65_RS04060 +0.4 1.6 hypothetical protein compare
DZA65_RS19315 +0.4 1.8 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA compare
DZA65_RS16325 +0.4 1.1 type II secretion system pilot lipoprotein GspS compare
DZA65_RS18395 +0.4 0.8 hypothetical protein compare
DZA65_RS22945 +0.4 1.3 hypothetical protein compare
DZA65_RS14345 +0.4 0.8 AlpA family transcriptional regulator compare
DZA65_RS06285 +0.4 1.3 MFS transporter compare
DZA65_RS01730 +0.4 2.1 esterase YqiA compare
DZA65_RS01835 +0.4 2.0 LacI family DNA-binding transcriptional regulator compare
DZA65_RS02685 +0.4 1.6 Cd(II)/Pb(II)-responsive transcriptional regulator compare
DZA65_RS19265 +0.4 1.2 ilvB operon leader peptide IvbL compare
DZA65_RS04575 +0.4 2.1 MipA/OmpV family protein compare
DZA65_RS02920 +0.4 1.5 hypothetical protein compare
DZA65_RS15025 +0.4 1.6 DUF2313 domain-containing protein compare
DZA65_RS06035 +0.4 1.7 competence protein ComEA compare
DZA65_RS16295 +0.4 1.9 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
DZA65_RS21775 +0.4 1.3 DUF1145 family protein compare
DZA65_RS09875 +0.4 1.3 cold shock-like protein CspD compare
DZA65_RS11090 +0.4 1.8 arabinose operon transcriptional regulator AraC compare
DZA65_RS14510 +0.4 1.5 hypothetical protein compare
DZA65_RS18625 +0.4 1.3 envelope stress response protein PspG compare
DZA65_RS07100 +0.4 2.4 undecaprenyl-phosphate galactose phosphotransferase WbaP compare
DZA65_RS11185 +0.4 1.0 acyltransferase family protein compare
DZA65_RS11580 +0.4 1.7 hypothetical protein compare
DZA65_RS03995 +0.4 1.6 AAA family ATPase compare
DZA65_RS05700 +0.4 2.0 DUF1987 domain-containing protein compare
DZA65_RS01695 +0.4 2.3 4,5-DOPA dioxygenase extradiol compare
DZA65_RS05090 +0.4 1.4 hypothetical protein compare
DZA65_RS17015 +0.3 1.0 PTS lactose/cellobiose transporter subunit IIA compare
DZA65_RS09650 +0.3 1.6 S-formylglutathione hydrolase compare
DZA65_RS09780 +0.3 2.2 30S ribosomal protein S6--L-glutamate ligase compare
DZA65_RS07850 +0.3 1.5 respiratory chain complex I subunit 1 family protein compare
DZA65_RS21560 +0.3 1.8 alkaline phosphatase compare
DZA65_RS15400 +0.3 2.0 tripartite tricarboxylate transporter TctB family protein compare
DZA65_RS18885 +0.3 1.2 glucosamine kinase compare
DZA65_RS02790 +0.3 1.0 DUF4868 domain-containing protein compare
DZA65_RS18225 +0.3 1.2 hypothetical protein compare
DZA65_RS00560 +0.3 1.3 hypothetical protein compare
DZA65_RS08490 +0.3 0.9 hypothetical protein compare
DZA65_RS01465 +0.3 1.9 DUF1543 domain-containing protein compare
DZA65_RS06355 +0.3 1.8 multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
DZA65_RS20115 +0.3 2.1 choline ABC transporter substrate-binding protein compare
DZA65_RS04335 +0.3 2.0 HAMP domain-containing protein compare
DZA65_RS18965 +0.3 1.5 YacL family protein compare
DZA65_RS03395 +0.3 2.2 LysR family transcriptional regulator compare
DZA65_RS18670 +0.3 2.0 Lrp/AsnC family transcriptional regulator compare
DZA65_RS07035 +0.3 1.7 hypothetical protein compare
DZA65_RS17805 +0.3 1.3 amino acid ABC transporter ATP-binding protein compare
DZA65_RS09620 +0.3 1.6 dihydrolipoamide succinyltransferase compare
DZA65_RS16995 +0.3 1.8 HD domain-containing protein compare
DZA65_RS22020 +0.3 1.4 hypothetical protein compare
DZA65_RS09680 +0.3 1.6 methyl-accepting chemotaxis protein compare
DZA65_RS09615 +0.3 1.2 acyl carrier protein compare
DZA65_RS08385 +0.3 2.0 nucleoside hydrolase compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola ME23 in plant experiments

For plant cv.Atlantic across organisms