Experiment setATCH172 for Dickeya dianthicola ME23

Compare to:

Atlantic

200 most important genes:

  gene name fitness t score description  
DZA65_RS05310 -3.6 -9.3 thymidylate synthase compare
DZA65_RS10940 -3.2 -13.9 tryptophan synthase subunit alpha compare
DZA65_RS10955 -3.2 -7.6 anthranilate phosphoribosyltransferase compare
DZA65_RS00800 -3.1 -6.3 O-antigen ligase family protein compare
DZA65_RS06895 -3.1 -6.7 Tol-Pal system protein TolQ compare
DZA65_RS19290 -3.1 -3.6 hypothetical protein compare
DZA65_RS21090 -3.0 -2.8 tyrosine recombinase XerC compare
DZA65_RS10945 -3.0 -13.3 tryptophan synthase subunit beta compare
DZA65_RS02490 -2.7 -9.7 phosphoserine phosphatase compare
DZA65_RS19215 -2.7 -5.8 3-isopropylmalate dehydratase small subunit compare
DZA65_RS16090 -2.7 -2.4 sulfurtransferase TusE compare
DZA65_RS10950 -2.6 -10.9 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DZA65_RS19540 -2.5 -8.7 phosphoglycerate dehydrogenase compare
DZA65_RS10965 -2.4 -11.6 anthranilate synthase component 1 compare
DZA65_RS06510 -2.4 -2.5 transcription antiterminator/RNA stability regulator CspE compare
DZA65_RS12505 -2.4 -8.0 carboxy terminal-processing peptidase compare
DZA65_RS22735 -2.2 -3.3 hypothetical protein compare
DZA65_RS13755 -2.2 -8.5 glucan biosynthesis protein G compare
DZA65_RS10905 -2.2 -7.8 TonB system transport protein TonB compare
DZA65_RS10915 -2.2 -7.3 septation protein A compare
DZA65_RS18650 -2.1 -4.6 alanine racemase compare
DZA65_RS10585 -2.1 -6.1 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DZA65_RS05500 -2.1 -4.6 molecular chaperone Skp compare
DZA65_RS02505 -2.0 -4.1 peptide chain release factor 3 compare
DZA65_RS19210 -2.0 -11.5 3-isopropylmalate dehydratase large subunit compare
DZA65_RS13750 -2.0 -9.8 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS15990 -2.0 -4.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
DZA65_RS11865 -1.9 -4.2 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS10810 -1.9 -9.1 formyltetrahydrofolate deformylase compare
DZA65_RS04230 -1.9 -8.5 outer membrane protein assembly factor BamE compare
DZA65_RS05860 -1.8 -3.6 preprotein translocase subunit YajC compare
DZA65_RS09455 -1.7 -4.0 DUF3413 domain-containing protein compare
DZA65_RS19480 -1.7 -2.3 homoserine kinase compare
DZA65_RS01350 -1.7 -2.8 DNA-binding transcriptional regulator Fis compare
DZA65_RS16610 -1.7 -9.6 IMP dehydrogenase compare
DZA65_RS11720 -1.7 -5.5 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DZA65_RS03210 -1.6 -1.5 preprotein translocase subunit SecG compare
DZA65_RS06470 -1.6 -6.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DZA65_RS22005 -1.6 -9.0 inorganic phosphate transporter PitA compare
DZA65_RS19205 -1.6 -8.7 3-isopropylmalate dehydrogenase compare
DZA65_RS06420 -1.5 -9.0 phosphoribosylformylglycinamidine cyclo-ligase compare
DZA65_RS12685 -1.5 -2.3 hypothetical protein compare
DZA65_RS18160 -1.5 -1.5 glycerate kinase compare
DZA65_RS05840 -1.4 -2.1 peroxiredoxin C compare
DZA65_RS03670 -1.4 -4.7 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
DZA65_RS20555 -1.4 -2.7 sulfurtransferase complex subunit TusD compare
DZA65_RS00795 -1.4 -5.6 glycosyltransferase family 9 protein compare
DZA65_RS03260 -1.4 -4.5 lipoprotein NlpI compare
DZA65_RS19745 -1.4 -8.0 GDP-L-fucose synthase compare
DZA65_RS22195 -1.4 -7.2 ribosome-dependent GTPase TypA compare
DZA65_RS18080 -1.4 -3.4 phosphoadenylyl-sulfate reductase compare
DZA65_RS01260 -1.4 -9.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DZA65_RS21790 -1.4 -2.4 sulfurtransferase TusA compare
DZA65_RS05975 -1.4 -2.0 cytochrome o ubiquinol oxidase subunit III compare
DZA65_RS19160 -1.4 -3.3 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DZA65_RS14515 -1.3 -2.9 transposase compare
DZA65_RS16830 -1.3 -11.0 phosphoribosylformylglycinamidine synthase compare
DZA65_RS19200 -1.3 -8.9 2-isopropylmalate synthase compare
DZA65_RS19475 -1.3 -4.9 threonine synthase compare
DZA65_RS21825 -1.3 -9.9 sugar kinase compare
DZA65_RS10485 -1.3 -3.2 membrane protein compare
DZA65_RS06990 -1.3 -8.3 UDP-glucose 4-epimerase GalE compare
DZA65_RS09910 -1.3 -3.1 thioredoxin-disulfide reductase compare
DZA65_RS15995 -1.3 -4.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
DZA65_RS17255 -1.2 -1.9 ribonuclease HI compare
DZA65_RS11210 -1.2 -1.9 TetR family transcriptional regulator compare
DZA65_RS06020 -1.2 -6.3 endopeptidase La compare
DZA65_RS10980 -1.2 -3.8 23S rRNA pseudouridine(2605) synthase RluB compare
DZA65_RS21265 -1.2 -2.6 thioredoxin TrxA compare
DZA65_RS07120 -1.2 -1.6 dTDP-4-dehydrorhamnose 3,5-epimerase compare
DZA65_RS22695 -1.2 -6.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DZA65_RS11020 -1.2 -6.6 HTH-type transcriptional regulator CysB compare
DZA65_RS13875 -1.2 -7.8 flagellar filament capping protein FliD compare
DZA65_RS22975 -1.1 -2.4 hypothetical protein compare
DZA65_RS21615 -1.1 -2.9 envelope stress sensor histidine kinase CpxA compare
DZA65_RS16960 -1.1 -2.9 tRNA-Ala compare
DZA65_RS01795 -1.1 -4.2 TonB system transport protein ExbD compare
DZA65_RS03515 -1.1 -2.5 tRNA-Gly compare
DZA65_RS20520 -1.1 -2.9 bacterioferritin-associated ferredoxin compare
DZA65_RS13330 -1.1 -5.1 AI-2E family transporter YdiK compare
DZA65_RS21475 -1.1 -2.0 met regulon transcriptional regulator MetJ compare
DZA65_RS18550 -1.1 -6.3 diaminopimelate decarboxylase compare
DZA65_RS21610 -1.1 -5.2 envelope stress response regulator transcription factor CpxR compare
DZA65_RS21310 -1.1 -7.2 ketol-acid reductoisomerase compare
DZA65_RS13390 -1.1 -6.2 quinone-dependent dihydroorotate dehydrogenase compare
DZA65_RS15520 -1.1 -6.3 tRNA-Arg compare
DZA65_RS13710 -1.1 -7.4 dihydroorotase compare
DZA65_RS21270 -1.1 -8.3 ATP-dependent RNA helicase RhlB compare
DZA65_RS11395 -1.1 -2.2 peptide chain release factor N(5)-glutamine methyltransferase compare
DZA65_RS11655 -1.1 -7.0 TerC family protein compare
DZA65_RS21335 -1.1 -7.5 dihydroxy-acid dehydratase compare
DZA65_RS02060 -1.1 -3.2 leucyl aminopeptidase compare
DZA65_RS19655 -1.1 -2.1 adenylosuccinate synthase compare
DZA65_RS06985 -1.1 -4.5 galactose-1-phosphate uridylyltransferase compare
DZA65_RS19735 -1.0 -3.6 ABC transporter permease compare
DZA65_RS19520 -1.0 -3.1 trp operon repressor compare
DZA65_RS16910 -1.0 -5.1 elongation factor 4 compare
DZA65_RS19740 -1.0 -5.3 ABC transporter ATP-binding protein compare
DZA65_RS10555 -1.0 -0.8 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
DZA65_RS11830 -1.0 -4.7 DNA-binding transcriptional regulator KdgR compare
DZA65_RS18085 -1.0 -7.2 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
DZA65_RS01790 -1.0 -6.9 tol-pal system-associated acyl-CoA thioesterase compare
DZA65_RS09240 -1.0 -1.4 biotin carboxyl carrier domain-containing protein compare
DZA65_RS20875 -1.0 -1.8 Fe-S biogenesis protein NfuA compare
DZA65_RS00970 -1.0 -3.4 twin-arginine translocase subunit TatA compare
DZA65_RS18655 -1.0 -1.7 DUF1471 domain-containing protein compare
DZA65_RS12945 -1.0 -3.5 phage shock protein PspA compare
DZA65_RS03635 -1.0 -3.4 sugar transferase compare
DZA65_RS16635 -1.0 -1.9 outer membrane protein assembly factor BamB compare
DZA65_RS03355 -1.0 -1.8 hypothetical protein compare
DZA65_RS22145 -1.0 -1.7 DNA-directed RNA polymerase subunit omega compare
DZA65_RS21275 -1.0 -6.1 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
DZA65_RS15335 -1.0 -7.7 amidophosphoribosyltransferase compare
DZA65_RS01255 -1.0 -5.1 phosphoribosylamine--glycine ligase compare
DZA65_RS21420 -1.0 -7.1 glutamate racemase compare
DZA65_RS20775 -1.0 -1.5 DUF2531 family protein compare
DZA65_RS13435 -1.0 -5.8 porin compare
DZA65_RS07980 -1.0 -1.4 phosphonate C-P lyase system protein PhnL compare
DZA65_RS13880 -1.0 -3.4 flagellar export chaperone FliS compare
DZA65_RS15280 -1.0 -3.8 acetate kinase compare
DZA65_RS05855 -1.0 -4.9 tRNA guanosine(34) transglycosylase Tgt compare
DZA65_RS07915 -1.0 -2.7 aspartate/glutamate racemase family protein compare
DZA65_RS07150 -1.0 -2.5 hypothetical protein compare
DZA65_RS03335 -0.9 -3.2 YggS family pyridoxal phosphate-dependent enzyme compare
DZA65_RS06900 -0.9 -0.8 colicin uptake protein TolR compare
DZA65_RS17345 -0.9 -5.3 bifunctional chorismate mutase/prephenate dehydratase compare
DZA65_RS13085 -0.9 -2.8 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS20005 -0.9 -1.3 helix-turn-helix transcriptional regulator compare
DZA65_RS04215 -0.9 -2.2 SsrA-binding protein SmpB compare
DZA65_RS01970 -0.9 -6.1 aspartate carbamoyltransferase compare
DZA65_RS19085 -0.9 -1.4 secA regulator SecM compare
DZA65_RS19195 -0.9 -2.3 leu operon leader peptide compare
DZA65_RS00810 -0.9 -1.6 putative lipopolysaccharide heptosyltransferase III compare
DZA65_RS14485 -0.9 -3.3 hypothetical protein compare
DZA65_RS22360 -0.9 -7.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DZA65_RS04355 -0.9 -4.5 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DZA65_RS19485 -0.9 -6.2 bifunctional aspartate kinase/homoserine dehydrogenase I compare
DZA65_RS10480 -0.9 -2.3 carboxy-S-adenosyl-L-methionine synthase CmoA compare
DZA65_RS11925 -0.9 -1.5 DNA-damage-inducible protein J compare
DZA65_RS20805 -0.9 -0.7 intracellular growth attenuator family protein compare
DZA65_RS05295 -0.9 -1.3 RNA pyrophosphohydrolase compare
DZA65_RS11900 -0.9 -0.9 hypothetical protein compare
DZA65_RS04160 -0.9 -1.6 DUF2590 family protein compare
DZA65_RS01615 -0.9 -4.9 stringent starvation protein A compare
DZA65_RS09990 -0.9 -1.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
DZA65_RS09515 -0.9 -3.0 hypothetical protein compare
DZA65_RS16725 -0.9 -1.8 Fe-S cluster assembly transcriptional regulator IscR compare
DZA65_RS01525 -0.8 -2.0 LPS export ABC transporter periplasmic protein LptC compare
DZA65_RS19725 -0.8 -6.4 phosphomannomutase/phosphoglucomutase compare
DZA65_RS01785 -0.8 -5.8 cystathionine beta-lyase compare
DZA65_RS00740 -0.8 -1.5 nucleoid occlusion factor SlmA compare
DZA65_RS01920 -0.8 -2.0 DUF1311 domain-containing protein compare
DZA65_RS13510 -0.8 -4.1 NAD-dependent protein deacylase compare
DZA65_RS17015 -0.8 -1.8 PTS lactose/cellobiose transporter subunit IIA compare
DZA65_RS20550 -0.8 -2.0 sulfurtransferase complex subunit TusC compare
DZA65_RS19175 -0.8 -5.0 catabolite repressor/activator compare
DZA65_RS19380 -0.8 -5.5 carbamoyl-phosphate synthase large subunit compare
DZA65_RS19720 -0.8 -5.6 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
DZA65_RS07125 -0.8 -4.2 dTDP-4-dehydrorhamnose reductase compare
DZA65_RS06025 -0.8 -1.7 DNA-binding protein HU-beta compare
DZA65_RS04700 -0.8 -1.3 transposase compare
DZA65_RS19350 -0.8 -2.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
DZA65_RS00365 -0.8 -4.6 DMT family transporter compare
DZA65_RS09000 -0.8 -3.1 GTP 3',8-cyclase MoaA compare
DZA65_RS03230 -0.8 -1.0 transcription termination/antitermination protein NusA compare
DZA65_RS15550 -0.8 -4.0 Fe(3+)-siderophore ABC transporter permease compare
DZA65_RS11435 -0.8 -2.6 redox-regulated ATPase YchF compare
DZA65_RS02870 -0.8 -2.1 chorismate lyase compare
DZA65_RS22240 -0.8 -4.6 thiol:disulfide interchange protein DsbA compare
DZA65_RS11120 -0.8 -4.4 mannose-6-phosphate isomerase compare
DZA65_RS07840 -0.8 -3.4 hydrogenase 4 membrane subunit compare
DZA65_RS14055 -0.8 -4.6 chemotaxis response regulator protein-glutamate methylesterase compare
DZA65_RS10960 -0.8 -1.6 C26 family cysteine hydrolase domain-containing family compare
DZA65_RS19730 -0.8 -5.4 GDP-mannose 4,6-dehydratase compare
DZA65_RS21115 -0.8 -4.4 class I adenylate cyclase compare
DZA65_RS18090 -0.7 -5.5 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
DZA65_RS12245 -0.7 -1.2 type III secretion system export apparatus subunit SctS compare
DZA65_RS21080 -0.7 -4.3 DNA helicase II compare
DZA65_RS16670 -0.7 -2.2 nucleoside-diphosphate kinase compare
DZA65_RS21495 -0.7 -3.1 cell division protein FtsN compare
DZA65_RS09190 -0.7 -2.7 glutamine ABC transporter ATP-binding protein GlnQ compare
DZA65_RS13645 -0.7 -2.9 beta-ketoacyl-ACP synthase II compare
DZA65_RS03185 -0.7 -0.7 ribosome assembly RNA-binding protein YhbY compare
DZA65_RS08845 -0.7 -2.6 hypothetical protein compare
DZA65_RS00675 -0.7 -1.5 isoaspartyl peptidase/L-asparaginase compare
DZA65_RS01530 -0.7 -5.2 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DZA65_RS15370 -0.7 -3.1 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS17115 -0.7 -2.2 bifunctional glycosyl transferase/transpeptidase compare
DZA65_RS00790 -0.7 -1.0 glycosyltransferase family 4 protein compare
DZA65_RS04035 -0.7 -1.6 DUF2732 domain-containing protein compare
DZA65_RS22635 -0.7 -2.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
DZA65_RS21470 -0.7 -4.9 cystathionine gamma-synthase compare
DZA65_RS15285 -0.7 -2.8 phosphate acetyltransferase compare
DZA65_RS10115 -0.7 -3.9 citrate lyase subunit alpha compare
DZA65_RS11360 -0.7 -2.6 fumarate/nitrate reduction transcriptional regulator Fnr compare
DZA65_RS01585 -0.7 -4.0 serine endoprotease DegQ compare
DZA65_RS12605 -0.7 -2.7 phage tail protein I compare
DZA65_RS15540 -0.7 -3.8 Fe2+-enterobactin ABC transporter substrate-binding protein compare
DZA65_RS02010 -0.7 -2.4 GNAT family N-acetyltransferase compare
DZA65_RS19385 -0.7 -4.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola ME23 in plant experiments

For plant cv.Atlantic across organisms