Experiment setATCH171 for Dickeya dianthicola ME23

Compare to:

Atlantic

200 most important genes:

  gene name fitness t score description  
DZA65_RS05310 -3.9 -10.7 thymidylate synthase compare
DZA65_RS06895 -2.9 -7.2 Tol-Pal system protein TolQ compare
DZA65_RS16610 -2.8 -14.7 IMP dehydrogenase compare
DZA65_RS09455 -2.4 -6.7 DUF3413 domain-containing protein compare
DZA65_RS02490 -2.2 -10.0 phosphoserine phosphatase compare
DZA65_RS18650 -2.1 -5.4 alanine racemase compare
DZA65_RS10905 -2.1 -7.7 TonB system transport protein TonB compare
DZA65_RS13750 -2.1 -11.3 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS18160 -2.1 -3.2 glycerate kinase compare
DZA65_RS01350 -2.0 -3.2 DNA-binding transcriptional regulator Fis compare
DZA65_RS06900 -2.0 -2.3 colicin uptake protein TolR compare
DZA65_RS10585 -2.0 -6.6 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DZA65_RS00800 -2.0 -4.8 O-antigen ligase family protein compare
DZA65_RS19540 -2.0 -8.3 phosphoglycerate dehydrogenase compare
DZA65_RS12505 -1.9 -6.6 carboxy terminal-processing peptidase compare
DZA65_RS10915 -1.8 -7.6 septation protein A compare
DZA65_RS16715 -1.8 -1.7 Fe-S cluster assembly scaffold IscU compare
DZA65_RS00810 -1.8 -3.6 putative lipopolysaccharide heptosyltransferase III compare
DZA65_RS21790 -1.8 -3.5 sulfurtransferase TusA compare
DZA65_RS19290 -1.7 -2.3 hypothetical protein compare
DZA65_RS13710 -1.7 -11.4 dihydroorotase compare
DZA65_RS15990 -1.7 -3.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
DZA65_RS13755 -1.7 -7.2 glucan biosynthesis protein G compare
DZA65_RS11655 -1.7 -11.8 TerC family protein compare
DZA65_RS01260 -1.7 -11.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DZA65_RS03260 -1.6 -5.4 lipoprotein NlpI compare
DZA65_RS19655 -1.6 -2.3 adenylosuccinate synthase compare
DZA65_RS06470 -1.6 -6.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DZA65_RS10945 -1.6 -10.4 tryptophan synthase subunit beta compare
DZA65_RS19210 -1.5 -10.3 3-isopropylmalate dehydratase large subunit compare
DZA65_RS11865 -1.5 -4.2 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS01795 -1.5 -5.8 TonB system transport protein ExbD compare
DZA65_RS03635 -1.5 -6.5 sugar transferase compare
DZA65_RS03670 -1.5 -5.5 kdo(2)-lipid IV(A) palmitoleoyltransferase compare
DZA65_RS10940 -1.5 -7.4 tryptophan synthase subunit alpha compare
DZA65_RS10485 -1.5 -5.6 membrane protein compare
DZA65_RS11720 -1.4 -6.2 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DZA65_RS06420 -1.4 -9.1 phosphoribosylformylglycinamidine cyclo-ligase compare
DZA65_RS19205 -1.4 -9.0 3-isopropylmalate dehydrogenase compare
DZA65_RS16830 -1.4 -12.0 phosphoribosylformylglycinamidine synthase compare
DZA65_RS10950 -1.4 -7.6 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DZA65_RS10955 -1.4 -4.7 anthranilate phosphoribosyltransferase compare
DZA65_RS15285 -1.4 -5.8 phosphate acetyltransferase compare
DZA65_RS19215 -1.4 -4.4 3-isopropylmalate dehydratase small subunit compare
DZA65_RS01255 -1.4 -8.5 phosphoribosylamine--glycine ligase compare
DZA65_RS15995 -1.4 -7.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
DZA65_RS16090 -1.3 -1.9 sulfurtransferase TusE compare
DZA65_RS22240 -1.3 -8.0 thiol:disulfide interchange protein DsbA compare
DZA65_RS13875 -1.3 -8.7 flagellar filament capping protein FliD compare
DZA65_RS20550 -1.3 -2.9 sulfurtransferase complex subunit TusC compare
DZA65_RS04230 -1.2 -6.9 outer membrane protein assembly factor BamE compare
DZA65_RS15370 -1.2 -4.7 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS18020 -1.2 -7.3 RNA polymerase sigma factor RpoS compare
DZA65_RS20545 -1.2 -2.2 sulfurtransferase complex subunit TusB compare
DZA65_RS06990 -1.2 -7.7 UDP-glucose 4-epimerase GalE compare
DZA65_RS13880 -1.2 -5.2 flagellar export chaperone FliS compare
DZA65_RS20905 -1.1 -2.2 glycerol-3-phosphate dehydrogenase compare
DZA65_RS01790 -1.1 -7.5 tol-pal system-associated acyl-CoA thioesterase compare
DZA65_RS12020 -1.1 -4.3 ribonuclease toxin immunity protein CdiI compare
DZA65_RS13390 -1.1 -5.1 quinone-dependent dihydroorotate dehydrogenase compare
DZA65_RS10965 -1.1 -7.4 anthranilate synthase component 1 compare
DZA65_RS13330 -1.1 -5.1 AI-2E family transporter YdiK compare
DZA65_RS15335 -1.1 -8.5 amidophosphoribosyltransferase compare
DZA65_RS13030 -1.1 -5.1 orotidine-5'-phosphate decarboxylase compare
DZA65_RS16705 -1.1 -3.7 co-chaperone HscB compare
DZA65_RS22005 -1.1 -6.3 inorganic phosphate transporter PitA compare
DZA65_RS19200 -1.1 -8.5 2-isopropylmalate synthase compare
DZA65_RS01585 -1.1 -6.7 serine endoprotease DegQ compare
DZA65_RS03210 -1.0 -1.9 preprotein translocase subunit SecG compare
DZA65_RS02505 -1.0 -2.3 peptide chain release factor 3 compare
DZA65_RS00790 -1.0 -2.0 glycosyltransferase family 4 protein compare
DZA65_RS21825 -1.0 -7.4 sugar kinase compare
DZA65_RS22195 -1.0 -5.5 ribosome-dependent GTPase TypA compare
DZA65_RS00360 -1.0 -4.2 MarR family transcriptional regulator compare
DZA65_RS13085 -1.0 -3.2 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS13645 -1.0 -3.9 beta-ketoacyl-ACP synthase II compare
DZA65_RS07110 -1.0 -5.1 dTDP-glucose 4,6-dehydratase compare
DZA65_RS06020 -1.0 -5.6 endopeptidase La compare
DZA65_RS20775 -1.0 -1.1 DUF2531 family protein compare
DZA65_RS19665 -1.0 -2.6 protease modulator HflC compare
DZA65_RS12810 -0.9 -2.6 YnbE family lipoprotein compare
DZA65_RS01180 -0.9 -1.6 DUF1127 domain-containing protein compare
DZA65_RS11930 -0.9 -2.0 type I toxin-antitoxin system SymE family toxin compare
DZA65_RS11565 -0.9 -3.0 disulfide bond formation protein DsbB compare
DZA65_RS18080 -0.9 -2.3 phosphoadenylyl-sulfate reductase compare
DZA65_RS01970 -0.9 -6.6 aspartate carbamoyltransferase compare
DZA65_RS11360 -0.9 -4.8 fumarate/nitrate reduction transcriptional regulator Fnr compare
DZA65_RS11020 -0.9 -5.9 HTH-type transcriptional regulator CysB compare
DZA65_RS21610 -0.9 -4.3 envelope stress response regulator transcription factor CpxR compare
DZA65_RS16960 -0.9 -1.9 tRNA-Ala compare
DZA65_RS22410 -0.9 -2.3 F0F1 ATP synthase subunit epsilon compare
DZA65_RS18320 -0.9 -4.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DZA65_RS05500 -0.9 -2.3 molecular chaperone Skp compare
DZA65_RS19195 -0.9 -3.3 leu operon leader peptide compare
DZA65_RS14055 -0.9 -6.5 chemotaxis response regulator protein-glutamate methylesterase compare
DZA65_RS16670 -0.9 -3.0 nucleoside-diphosphate kinase compare
DZA65_RS22695 -0.9 -4.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DZA65_RS10810 -0.9 -5.2 formyltetrahydrofolate deformylase compare
DZA65_RS15555 -0.9 -4.5 iron-enterobactin ABC transporter permease compare
DZA65_RS05975 -0.9 -1.7 cytochrome o ubiquinol oxidase subunit III compare
DZA65_RS19380 -0.8 -6.4 carbamoyl-phosphate synthase large subunit compare
DZA65_RS15280 -0.8 -4.0 acetate kinase compare
DZA65_RS13040 -0.8 -2.1 LapA family protein compare
DZA65_RS18270 -0.8 -2.7 glycerol-3-phosphate 1-O-acyltransferase PlsY compare
DZA65_RS16635 -0.8 -1.9 outer membrane protein assembly factor BamB compare
DZA65_RS02940 -0.8 -3.9 DedA family protein compare
DZA65_RS21420 -0.8 -6.6 glutamate racemase compare
DZA65_RS09240 -0.8 -1.6 biotin carboxyl carrier domain-containing protein compare
DZA65_RS07065 -0.8 -2.8 dCTP deaminase compare
DZA65_RS11435 -0.8 -2.8 redox-regulated ATPase YchF compare
DZA65_RS06685 -0.8 -6.6 asparagine synthase B compare
DZA65_RS20555 -0.8 -1.7 sulfurtransferase complex subunit TusD compare
DZA65_RS06510 -0.8 -1.6 transcription antiterminator/RNA stability regulator CspE compare
DZA65_RS09910 -0.8 -2.9 thioredoxin-disulfide reductase compare
DZA65_RS12685 -0.8 -1.9 hypothetical protein compare
DZA65_RS19475 -0.8 -3.6 threonine synthase compare
DZA65_RS15580 -0.8 -3.7 enterochelin esterase compare
DZA65_RS21075 -0.8 -2.9 magnesium/cobalt transporter CorA compare
DZA65_RS16370 -0.8 -1.4 hypothetical protein compare
DZA65_RS13595 -0.8 -2.7 penicillin-binding protein activator LpoB compare
DZA65_RS22835 -0.8 -2.4 hypothetical protein compare
DZA65_RS21275 -0.8 -4.7 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
DZA65_RS14145 -0.8 -2.4 hypothetical protein compare
DZA65_RS21270 -0.8 -6.2 ATP-dependent RNA helicase RhlB compare
DZA65_RS00740 -0.8 -1.6 nucleoid occlusion factor SlmA compare
DZA65_RS17985 -0.8 -2.2 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
DZA65_RS10555 -0.7 -1.0 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase compare
DZA65_RS22360 -0.7 -6.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DZA65_RS07125 -0.7 -4.9 dTDP-4-dehydrorhamnose reductase compare
DZA65_RS01615 -0.7 -5.5 stringent starvation protein A compare
DZA65_RS06985 -0.7 -3.8 galactose-1-phosphate uridylyltransferase compare
DZA65_RS17345 -0.7 -5.3 bifunctional chorismate mutase/prephenate dehydratase compare
DZA65_RS10980 -0.7 -2.5 23S rRNA pseudouridine(2605) synthase RluB compare
DZA65_RS19385 -0.7 -4.5 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DZA65_RS06115 -0.7 -6.5 multidrug efflux RND transporter permease subunit compare
DZA65_RS16945 -0.7 -5.3 ATP-dependent RNA helicase SrmB compare
DZA65_RS02150 -0.7 -2.6 helix-turn-helix transcriptional regulator compare
DZA65_RS00795 -0.7 -4.0 glycosyltransferase family 9 protein compare
DZA65_RS04355 -0.7 -4.7 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DZA65_RS18655 -0.7 -1.3 DUF1471 domain-containing protein compare
DZA65_RS15540 -0.7 -4.3 Fe2+-enterobactin ABC transporter substrate-binding protein compare
DZA65_RS11390 -0.7 -2.7 tetratricopeptide repeat-containing protein compare
DZA65_RS21090 -0.7 -0.8 tyrosine recombinase XerC compare
DZA65_RS01405 -0.7 -5.7 RNase E specificity factor CsrD compare
DZA65_RS06120 -0.7 -5.2 efflux RND transporter periplasmic adaptor subunit compare
DZA65_RS00735 -0.7 -3.0 orotate phosphoribosyltransferase compare
DZA65_RS21095 -0.7 -2.8 DUF484 domain-containing protein compare
DZA65_RS08270 -0.7 -1.7 biopolymer transporter ExbD compare
DZA65_RS21265 -0.7 -1.4 thioredoxin TrxA compare
DZA65_RS15550 -0.7 -3.8 Fe(3+)-siderophore ABC transporter permease compare
DZA65_RS19745 -0.7 -4.0 GDP-L-fucose synthase compare
DZA65_RS17595 -0.6 -2.1 hypothetical protein compare
DZA65_RS15275 -0.6 -2.3 hypothetical protein compare
DZA65_RS15520 -0.6 -3.8 tRNA-Arg compare
DZA65_RS14045 -0.6 -3.9 protein phosphatase CheZ compare
DZA65_RS14710 -0.6 -2.5 LD-carboxypeptidase compare
DZA65_RS00900 -0.6 -2.4 ATP-binding cassette domain-containing protein compare
DZA65_RS22975 -0.6 -2.2 hypothetical protein compare
DZA65_RS06625 -0.6 -3.5 CNNM family magnesium/cobalt transport protein CorC compare
DZA65_RS19350 -0.6 -2.0 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
DZA65_RS12945 -0.6 -2.4 phage shock protein PspA compare
DZA65_RS18550 -0.6 -4.0 diaminopimelate decarboxylase compare
DZA65_RS04370 -0.6 -2.9 cysteine synthase A compare
DZA65_RS21080 -0.6 -3.6 DNA helicase II compare
DZA65_RS01525 -0.6 -1.6 LPS export ABC transporter periplasmic protein LptC compare
DZA65_RS18200 -0.6 -1.8 hypothetical protein compare
DZA65_RS16045 -0.6 -2.5 polyphosphate kinase 1 compare
DZA65_RS00535 -0.6 -1.4 helix-turn-helix transcriptional regulator compare
DZA65_RS03625 -0.6 -5.2 polysaccharide biosynthesis protein compare
DZA65_RS11715 -0.6 -4.2 5-dehydro-4-deoxy-D-glucuronate isomerase compare
DZA65_RS10050 -0.6 -2.5 histidinol-phosphate transaminase compare
DZA65_RS16850 -0.6 -2.1 hypothetical protein compare
DZA65_RS20805 -0.6 -0.5 intracellular growth attenuator family protein compare
DZA65_RS16925 -0.6 -1.1 anti-sigma-E factor RseA compare
DZA65_RS01510 -0.6 -2.8 RNA polymerase factor sigma-54 compare
DZA65_RS19520 -0.6 -2.2 trp operon repressor compare
DZA65_RS22210 -0.6 -3.4 nitrogen regulation protein NR(I) compare
DZA65_RS15560 -0.6 -3.4 ABC transporter ATP-binding protein compare
DZA65_RS08720 -0.6 -2.6 MarR family transcriptional regulator compare
DZA65_RS18405 -0.6 -4.4 ribonuclease R compare
DZA65_RS12995 -0.6 -2.7 exoribonuclease II compare
DZA65_RS18085 -0.6 -4.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
DZA65_RS10960 -0.6 -1.9 C26 family cysteine hydrolase domain-containing family compare
DZA65_RS01530 -0.6 -4.3 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DZA65_RS19740 -0.5 -3.0 ABC transporter ATP-binding protein compare
DZA65_RS05165 -0.5 -1.1 hypothetical protein compare
DZA65_RS21510 -0.5 -4.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
DZA65_RS20255 -0.5 -3.6 glyoxylate bypass operon transcriptional repressor IclR compare
DZA65_RS21335 -0.5 -4.3 dihydroxy-acid dehydratase compare
DZA65_RS08655 -0.5 -2.2 lactate utilization protein C compare
DZA65_RS21445 -0.5 -2.3 Si-specific NAD(P)(+) transhydrogenase compare
DZA65_RS09570 -0.5 -2.1 1-phosphofructokinase compare
DZA65_RS16910 -0.5 -2.9 elongation factor 4 compare
DZA65_RS16575 -0.5 -2.3 AlpA family phage regulatory protein compare
DZA65_RS11055 -0.5 -2.6 electron transport complex subunit RsxA compare
DZA65_RS07180 -0.5 -3.2 NADP-dependent phosphogluconate dehydrogenase compare
DZA65_RS11175 -0.5 -2.7 DUF2384 domain-containing protein compare
DZA65_RS03040 -0.5 -3.5 FAD:protein FMN transferase ApbE compare
DZA65_RS15585 -0.5 -4.7 TonB-dependent siderophore receptor compare
DZA65_RS16885 -0.5 -2.9 pyridoxine 5'-phosphate synthase compare


Specific Phenotypes

None in this experiment

For Dickeya dianthicola ME23 in plant experiments

For plant cv.Atlantic across organisms