Experiment setATCH170 for Dickeya dianthicola ME23

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PDB

200 most important genes:

  gene name fitness t score description  
DZA65_RS21090 -4.2 -2.9 tyrosine recombinase XerC compare
DZA65_RS22635 -3.5 -4.7 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
DZA65_RS00800 -3.3 -6.3 O-antigen ligase family protein compare
DZA65_RS22335 -3.2 -25.0 low affinity potassium transporter Kup compare
DZA65_RS21420 -3.1 -18.0 glutamate racemase compare
DZA65_RS05310 -3.1 -11.0 thymidylate synthase compare
DZA65_RS04310 -2.7 -9.8 Dyp-type peroxidase compare
DZA65_RS22640 -2.6 -9.7 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
DZA65_RS19495 -2.5 -3.2 two-component system response regulator ArcA compare
DZA65_RS06895 -2.4 -7.0 Tol-Pal system protein TolQ compare
DZA65_RS21450 -2.4 -10.3 DNA-binding transcriptional regulator OxyR compare
DZA65_RS16715 -2.4 -1.9 Fe-S cluster assembly scaffold IscU compare
DZA65_RS19540 -2.2 -9.0 phosphoglycerate dehydrogenase compare
DZA65_RS21370 -2.2 -12.6 DUF413 domain-containing protein compare
DZA65_RS13750 -2.1 -11.3 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS20970 -2.1 -11.2 gluconate operon transcriptional repressor GntR compare
DZA65_RS04255 -2.1 -12.1 divalent metal cation transporter compare
DZA65_RS06685 -2.1 -14.3 asparagine synthase B compare
DZA65_RS03260 -2.0 -7.3 lipoprotein NlpI compare
DZA65_RS13085 -1.9 -5.4 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS13755 -1.9 -7.7 glucan biosynthesis protein G compare
DZA65_RS12505 -1.8 -6.5 carboxy terminal-processing peptidase compare
DZA65_RS16960 -1.8 -2.4 tRNA-Ala compare
DZA65_RS02680 -1.8 -8.5 heavy metal translocating P-type ATPase compare
DZA65_RS15370 -1.8 -6.5 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS10915 -1.8 -5.8 septation protein A compare
DZA65_RS11020 -1.8 -9.6 HTH-type transcriptional regulator CysB compare
DZA65_RS10940 -1.8 -9.4 tryptophan synthase subunit alpha compare
DZA65_RS07170 -1.7 -5.5 UTP--glucose-1-phosphate uridylyltransferase compare
DZA65_RS20355 -1.7 -6.7 Trk system potassium transporter TrkA compare
DZA65_RS21375 -1.7 -10.6 HTH-type transcriptional regulator HdfR compare
DZA65_RS11925 -1.7 -2.3 DNA-damage-inducible protein J compare
DZA65_RS01350 -1.7 -2.9 DNA-binding transcriptional regulator Fis compare
DZA65_RS05445 -1.6 -7.7 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
DZA65_RS09515 -1.6 -4.7 hypothetical protein compare
DZA65_RS06900 -1.6 -1.4 colicin uptake protein TolR compare
DZA65_RS22210 -1.6 -9.0 nitrogen regulation protein NR(I) compare
DZA65_RS10485 -1.6 -4.6 membrane protein compare
DZA65_RS21790 -1.6 -2.9 sulfurtransferase TusA compare
DZA65_RS10305 -1.5 -3.2 ATP-binding protein compare
DZA65_RS00035 -1.5 -12.0 oligopeptidase A compare
DZA65_RS02490 -1.5 -7.7 phosphoserine phosphatase compare
DZA65_RS03255 -1.5 -2.3 polyribonucleotide nucleotidyltransferase compare
DZA65_RS01525 -1.5 -4.0 LPS export ABC transporter periplasmic protein LptC compare
DZA65_RS15520 -1.5 -7.8 tRNA-Arg compare
DZA65_RS11145 -1.5 -4.6 ROK family transcriptional regulator compare
DZA65_RS15380 -1.5 -7.0 4-phosphoerythronate dehydrogenase PdxB compare
DZA65_RS04355 -1.5 -8.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DZA65_RS11865 -1.4 -3.3 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS16090 -1.4 -1.7 sulfurtransferase TusE compare
DZA65_RS01510 -1.4 -5.8 RNA polymerase factor sigma-54 compare
DZA65_RS21610 -1.4 -5.4 envelope stress response regulator transcription factor CpxR compare
DZA65_RS06745 -1.4 -8.3 alpha-D-glucose phosphate-specific phosphoglucomutase compare
DZA65_RS17245 -1.4 -4.4 tRNA-Asp compare
DZA65_RS10945 -1.4 -9.1 tryptophan synthase subunit beta compare
DZA65_RS22735 -1.4 -2.5 hypothetical protein compare
DZA65_RS13425 -1.4 -6.4 nicotinate phosphoribosyltransferase compare
DZA65_RS10890 -1.4 -8.3 cardiolipin synthase compare
DZA65_RS18270 -1.4 -4.1 glycerol-3-phosphate 1-O-acyltransferase PlsY compare
DZA65_RS19405 -1.3 -2.2 FKBP-type peptidyl-prolyl cis-trans isomerase compare
DZA65_RS21575 -1.3 -2.9 6-phosphofructokinase compare
DZA65_RS03410 -1.3 -2.9 tRNA-Leu compare
DZA65_RS16635 -1.3 -2.6 outer membrane protein assembly factor BamB compare
DZA65_RS22005 -1.3 -7.7 inorganic phosphate transporter PitA compare
DZA65_RS03210 -1.3 -1.5 preprotein translocase subunit SecG compare
DZA65_RS16045 -1.3 -4.9 polyphosphate kinase 1 compare
DZA65_RS01500 -1.3 -4.8 PTS IIA-like nitrogen regulatory protein PtsN compare
DZA65_RS02945 -1.3 -2.6 transcriptional regulator ExuR compare
DZA65_RS06660 -1.2 -2.5 tRNA-Met compare
DZA65_RS16610 -1.2 -8.8 IMP dehydrogenase compare
DZA65_RS16810 -1.2 -6.5 nitrogen regulatory protein P-II compare
DZA65_RS19655 -1.2 -3.0 adenylosuccinate synthase compare
DZA65_RS16705 -1.2 -3.2 co-chaperone HscB compare
DZA65_RS22290 -1.2 -9.9 substrate-binding domain-containing protein compare
DZA65_RS16885 -1.2 -4.9 pyridoxine 5'-phosphate synthase compare
DZA65_RS02300 -1.2 -2.6 type-1Ba cytolytic delta-endotoxin compare
DZA65_RS10165 -1.2 -5.4 DUF496 family protein compare
DZA65_RS10965 -1.2 -7.2 anthranilate synthase component 1 compare
DZA65_RS20875 -1.1 -3.1 Fe-S biogenesis protein NfuA compare
DZA65_RS09095 -1.1 -1.8 hypothetical protein compare
DZA65_RS21075 -1.1 -3.9 magnesium/cobalt transporter CorA compare
DZA65_RS14835 -1.1 -2.2 N-acetyltransferase compare
DZA65_RS18650 -1.1 -3.4 alanine racemase compare
DZA65_RS21080 -1.1 -6.1 DNA helicase II compare
DZA65_RS01545 -1.0 -3.3 phospholipid ABC transporter ATP-binding protein MlaF compare
DZA65_RS19515 -1.0 -6.2 non-canonical purine NTP phosphatase compare
DZA65_RS10920 -1.0 -4.5 UPF0259 family protein compare
DZA65_RS01370 -1.0 -2.2 YhdT family protein compare
DZA65_RS06990 -1.0 -7.3 UDP-glucose 4-epimerase GalE compare
DZA65_RS16225 -1.0 -7.3 LacI family transcriptional regulator compare
DZA65_RS09395 -1.0 -2.0 plasmid stabilization protein compare
DZA65_RS19465 -1.0 -6.6 transaldolase compare
DZA65_RS22160 -1.0 -6.3 ATP-dependent DNA helicase RecG compare
DZA65_RS18145 -1.0 -6.6 GTP diphosphokinase compare
DZA65_RS15335 -1.0 -7.7 amidophosphoribosyltransferase compare
DZA65_RS17015 -0.9 -2.2 PTS lactose/cellobiose transporter subunit IIA compare
DZA65_RS13615 -0.9 -7.0 PTS glucose transporter subunit IIBC compare
DZA65_RS18080 -0.9 -1.9 phosphoadenylyl-sulfate reductase compare
DZA65_RS18320 -0.9 -4.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DZA65_RS22350 -0.9 -7.3 transcriptional regulator AsnC compare
DZA65_RS14310 -0.9 -1.8 LysR family transcriptional regulator compare
DZA65_RS21755 -0.9 -5.0 cell division protein FtsX compare
DZA65_RS22705 -0.9 -2.9 membrane protein insertion efficiency factor YidD compare
DZA65_RS22240 -0.9 -6.1 thiol:disulfide interchange protein DsbA compare
DZA65_RS01365 -0.9 -6.2 sodium/pantothenate symporter compare
DZA65_RS13450 -0.9 -6.4 aspartate/tyrosine/aromatic aminotransferase compare
DZA65_RS14335 -0.8 -2.9 transcriptional regulator compare
DZA65_RS01725 -0.8 -5.2 3',5'-cyclic-AMP phosphodiesterase compare
DZA65_RS14515 -0.8 -1.1 transposase compare
DZA65_RS12020 -0.8 -3.2 ribonuclease toxin immunity protein CdiI compare
DZA65_RS13230 -0.8 -1.9 DUF1471 domain-containing protein compare
DZA65_RS17880 -0.8 -2.1 glycine betaine/L-proline ABC transporter permease ProW compare
DZA65_RS04370 -0.8 -3.5 cysteine synthase A compare
DZA65_RS17595 -0.8 -2.7 hypothetical protein compare
DZA65_RS01555 -0.8 -6.1 outer membrane lipid asymmetry maintenance protein MlaD compare
DZA65_RS06115 -0.8 -6.9 multidrug efflux RND transporter permease subunit compare
DZA65_RS14505 -0.8 -2.6 hypothetical protein compare
DZA65_RS20545 -0.8 -1.9 sulfurtransferase complex subunit TusB compare
DZA65_RS12435 -0.8 -4.0 EcsC family protein compare
DZA65_RS12910 -0.8 -4.7 transcriptional regulator TyrR compare
DZA65_RS22800 -0.8 -3.3 hypothetical protein compare
DZA65_RS15200 -0.8 -1.6 hypothetical protein compare
DZA65_RS13465 -0.8 -5.7 L,D-transpeptidase compare
DZA65_RS04700 -0.7 -1.5 transposase compare
DZA65_RS18085 -0.7 -5.2 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
DZA65_RS00535 -0.7 -2.1 helix-turn-helix transcriptional regulator compare
DZA65_RS20795 -0.7 -5.4 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA compare
DZA65_RS22830 -0.7 -3.2 hypothetical protein compare
DZA65_RS06120 -0.7 -5.4 efflux RND transporter periplasmic adaptor subunit compare
DZA65_RS19350 -0.7 -2.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
DZA65_RS14295 -0.7 -1.8 DUF2594 family protein compare
DZA65_RS10950 -0.7 -4.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DZA65_RS20005 -0.7 -1.5 helix-turn-helix transcriptional regulator compare
DZA65_RS00790 -0.7 -1.1 glycosyltransferase family 4 protein compare
DZA65_RS06275 -0.7 -3.9 transcriptional regulator RcsB compare
DZA65_RS17145 -0.7 -3.1 polynucleotide adenylyltransferase PcnB compare
DZA65_RS18915 -0.7 -3.0 DeoR/GlpR transcriptional regulator compare
DZA65_RS06335 -0.7 -1.3 DUF1778 domain-containing protein compare
DZA65_RS04230 -0.7 -4.3 outer membrane protein assembly factor BamE compare
DZA65_RS09600 -0.7 -4.8 sugar transporter compare
DZA65_RS11155 -0.7 -2.3 DUF1283 family protein compare
DZA65_RS11590 -0.7 -3.2 septum site-determining protein MinD compare
DZA65_RS20865 -0.7 -1.1 pimeloyl-ACP methyl ester esterase BioH compare
DZA65_RS17985 -0.7 -1.7 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
DZA65_RS14025 -0.7 -2.8 flagella synthesis chaperone protein FlgN compare
DZA65_RS01745 -0.7 -4.1 NAD(P)H-dependent oxidoreductase compare
DZA65_RS17255 -0.7 -1.8 ribonuclease HI compare
DZA65_RS09910 -0.7 -2.4 thioredoxin-disulfide reductase compare
DZA65_RS13870 -0.7 -3.6 flagellin compare
DZA65_RS10030 -0.7 -2.3 imidazole glycerol phosphate synthase subunit HisF compare
DZA65_RS22295 -0.7 -5.4 ribokinase compare
DZA65_RS12945 -0.7 -2.7 phage shock protein PspA compare
DZA65_RS18445 -0.7 -2.4 YggT family protein compare
DZA65_RS01560 -0.7 -4.4 phospholipid-binding protein MlaC compare
DZA65_RS17950 -0.7 -1.9 5S ribosomal RNA compare
DZA65_RS10050 -0.7 -2.6 histidinol-phosphate transaminase compare
DZA65_RS12860 -0.6 -4.5 zinc transporter ZntB compare
DZA65_RS15340 -0.6 -4.5 colicin V production protein compare
DZA65_RS11930 -0.6 -1.3 type I toxin-antitoxin system SymE family toxin compare
DZA65_RS21770 -0.6 -3.5 16S rRNA (guanine(966)-N(2))-methyltransferase compare
DZA65_RS06495 -0.6 -2.4 M15 family metallopeptidase compare
DZA65_RS21265 -0.6 -1.6 thioredoxin TrxA compare
DZA65_RS10365 -0.6 -2.6 DUF1330 domain-containing protein compare
DZA65_RS18020 -0.6 -4.4 RNA polymerase sigma factor RpoS compare
DZA65_RS09415 -0.6 -2.1 hypothetical protein compare
DZA65_RS17685 -0.6 -2.8 tRNA-Thr compare
DZA65_RS08855 -0.6 -0.8 hypothetical protein compare
DZA65_RS10905 -0.6 -2.6 TonB system transport protein TonB compare
DZA65_RS19620 -0.6 -4.8 deoxyribonuclease I compare
DZA65_RS14270 -0.6 -2.6 LysE family transporter compare
DZA65_RS20255 -0.6 -3.7 glyoxylate bypass operon transcriptional repressor IclR compare
DZA65_RS14145 -0.6 -1.6 hypothetical protein compare
DZA65_RS16945 -0.6 -4.2 ATP-dependent RNA helicase SrmB compare
DZA65_RS20840 -0.6 -2.4 two-component system response regulator OmpR compare
DZA65_RS22775 -0.6 -1.3 hypothetical protein compare
DZA65_RS17265 -0.6 -4.7 hydroxyacylglutathione hydrolase compare
DZA65_RS20550 -0.6 -1.7 sulfurtransferase complex subunit TusC compare
DZA65_RS09525 -0.6 -3.6 ABC transporter permease subunit compare
DZA65_RS18975 -0.6 -0.6 helix-turn-helix transcriptional regulator compare
DZA65_RS16910 -0.6 -2.9 elongation factor 4 compare
DZA65_RS07685 -0.6 -1.5 helix-turn-helix transcriptional regulator compare
DZA65_RS02565 -0.6 -3.3 alkyl hydroperoxide reductase subunit C compare
DZA65_RS13690 -0.6 -3.4 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
DZA65_RS16115 -0.6 -4.0 methylglyoxal synthase compare
DZA65_RS04730 -0.6 -1.7 hypothetical protein compare
DZA65_RS21275 -0.6 -4.1 guanosine-5'-triphosphate,3'-diphosphate diphosphatase compare
DZA65_RS06025 -0.6 -1.2 DNA-binding protein HU-beta compare
DZA65_RS15605 -0.6 -1.0 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
DZA65_RS19070 -0.6 -2.1 DNA gyrase inhibitor YacG compare
DZA65_RS22195 -0.6 -3.4 ribosome-dependent GTPase TypA compare
DZA65_RS11955 -0.6 -1.8 hypothetical protein compare
DZA65_RS14030 -0.6 -2.1 flagellar protein FlhE compare
DZA65_RS08935 -0.6 -4.1 NAD-dependent malic enzyme compare
DZA65_RS06420 -0.6 -3.8 phosphoribosylformylglycinamidine cyclo-ligase compare
DZA65_RS16710 -0.6 -1.0 iron-sulfur cluster assembly protein IscA compare
DZA65_RS12355 -0.6 -1.4 ABC transporter permease compare
DZA65_RS01685 -0.6 -3.0 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
DZA65_RS17700 -0.6 -3.9 sigma factor-binding protein Crl compare
DZA65_RS02505 -0.5 -1.8 peptide chain release factor 3 compare
DZA65_RS01495 -0.5 -2.9 RNase adapter RapZ compare


Specific Phenotypes

For 7 genes in this experiment

For control kanamycin in Dickeya dianthicola ME23

For control kanamycin across organisms