Experiment setATCH169 for Dickeya dianthicola ME23

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PDB

200 most important genes:

  gene name fitness t score description  
DZA65_RS21420 -3.3 -18.9 glutamate racemase compare
DZA65_RS22335 -3.3 -25.2 low affinity potassium transporter Kup compare
DZA65_RS22635 -3.1 -5.4 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
DZA65_RS22640 -3.1 -10.4 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
DZA65_RS04310 -3.0 -13.5 Dyp-type peroxidase compare
DZA65_RS05310 -2.9 -11.8 thymidylate synthase compare
DZA65_RS16960 -2.9 -5.5 tRNA-Ala compare
DZA65_RS18160 -2.7 -3.5 glycerate kinase compare
DZA65_RS21450 -2.6 -12.1 DNA-binding transcriptional regulator OxyR compare
DZA65_RS00800 -2.6 -3.7 O-antigen ligase family protein compare
DZA65_RS13750 -2.6 -13.0 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS13755 -2.5 -9.1 glucan biosynthesis protein G compare
DZA65_RS16715 -2.4 -1.9 Fe-S cluster assembly scaffold IscU compare
DZA65_RS03260 -2.4 -8.2 lipoprotein NlpI compare
DZA65_RS10915 -2.4 -7.5 septation protein A compare
DZA65_RS04255 -2.3 -13.1 divalent metal cation transporter compare
DZA65_RS06895 -2.3 -6.8 Tol-Pal system protein TolQ compare
DZA65_RS21090 -2.2 -2.7 tyrosine recombinase XerC compare
DZA65_RS21610 -2.0 -6.7 envelope stress response regulator transcription factor CpxR compare
DZA65_RS15380 -2.0 -8.9 4-phosphoerythronate dehydrogenase PdxB compare
DZA65_RS20970 -1.9 -9.4 gluconate operon transcriptional repressor GntR compare
DZA65_RS19350 -1.9 -4.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
DZA65_RS02680 -1.9 -10.4 heavy metal translocating P-type ATPase compare
DZA65_RS01525 -1.9 -5.5 LPS export ABC transporter periplasmic protein LptC compare
DZA65_RS21370 -1.8 -9.3 DUF413 domain-containing protein compare
DZA65_RS16090 -1.8 -2.5 sulfurtransferase TusE compare
DZA65_RS02490 -1.8 -8.9 phosphoserine phosphatase compare
DZA65_RS05445 -1.8 -8.3 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
DZA65_RS11020 -1.8 -9.3 HTH-type transcriptional regulator CysB compare
DZA65_RS15370 -1.8 -6.6 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS06685 -1.8 -12.8 asparagine synthase B compare
DZA65_RS20550 -1.8 -3.8 sulfurtransferase complex subunit TusC compare
DZA65_RS21375 -1.7 -11.4 HTH-type transcriptional regulator HdfR compare
DZA65_RS00035 -1.7 -12.9 oligopeptidase A compare
DZA65_RS22210 -1.7 -10.1 nitrogen regulation protein NR(I) compare
DZA65_RS19540 -1.7 -6.7 phosphoglycerate dehydrogenase compare
DZA65_RS13085 -1.6 -4.9 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS11145 -1.6 -6.9 ROK family transcriptional regulator compare
DZA65_RS10485 -1.6 -4.7 membrane protein compare
DZA65_RS12505 -1.6 -5.4 carboxy terminal-processing peptidase compare
DZA65_RS01510 -1.6 -6.4 RNA polymerase factor sigma-54 compare
DZA65_RS19495 -1.6 -1.8 two-component system response regulator ArcA compare
DZA65_RS16810 -1.6 -8.0 nitrogen regulatory protein P-II compare
DZA65_RS01350 -1.6 -2.9 DNA-binding transcriptional regulator Fis compare
DZA65_RS19405 -1.5 -2.5 FKBP-type peptidyl-prolyl cis-trans isomerase compare
DZA65_RS08535 -1.4 -3.5 amidohydrolase compare
DZA65_RS17245 -1.4 -6.4 tRNA-Asp compare
DZA65_RS07170 -1.4 -5.9 UTP--glucose-1-phosphate uridylyltransferase compare
DZA65_RS06900 -1.4 -1.1 colicin uptake protein TolR compare
DZA65_RS16705 -1.4 -4.3 co-chaperone HscB compare
DZA65_RS20545 -1.4 -2.9 sulfurtransferase complex subunit TusB compare
DZA65_RS15520 -1.3 -7.3 tRNA-Arg compare
DZA65_RS10940 -1.3 -6.4 tryptophan synthase subunit alpha compare
DZA65_RS10890 -1.3 -8.3 cardiolipin synthase compare
DZA65_RS11865 -1.3 -3.2 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS06745 -1.3 -8.2 alpha-D-glucose phosphate-specific phosphoglucomutase compare
DZA65_RS10305 -1.3 -2.8 ATP-binding protein compare
DZA65_RS20555 -1.3 -2.9 sulfurtransferase complex subunit TusD compare
DZA65_RS19655 -1.3 -1.9 adenylosuccinate synthase compare
DZA65_RS14515 -1.3 -1.9 transposase compare
DZA65_RS16610 -1.3 -8.4 IMP dehydrogenase compare
DZA65_RS01500 -1.3 -5.2 PTS IIA-like nitrogen regulatory protein PtsN compare
DZA65_RS04355 -1.3 -7.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DZA65_RS22290 -1.2 -10.4 substrate-binding domain-containing protein compare
DZA65_RS10920 -1.2 -5.4 UPF0259 family protein compare
DZA65_RS10945 -1.2 -7.5 tryptophan synthase subunit beta compare
DZA65_RS20355 -1.2 -3.9 Trk system potassium transporter TrkA compare
DZA65_RS16045 -1.2 -4.4 polyphosphate kinase 1 compare
DZA65_RS22160 -1.2 -6.9 ATP-dependent DNA helicase RecG compare
DZA65_RS22965 -1.2 -2.2 hypothetical protein compare
DZA65_RS13425 -1.1 -5.1 nicotinate phosphoribosyltransferase compare
DZA65_RS16885 -1.1 -4.6 pyridoxine 5'-phosphate synthase compare
DZA65_RS20775 -1.1 -2.1 DUF2531 family protein compare
DZA65_RS16225 -1.1 -8.3 LacI family transcriptional regulator compare
DZA65_RS17880 -1.1 -2.5 glycine betaine/L-proline ABC transporter permease ProW compare
DZA65_RS19515 -1.1 -6.1 non-canonical purine NTP phosphatase compare
DZA65_RS14025 -1.1 -4.5 flagella synthesis chaperone protein FlgN compare
DZA65_RS20875 -1.1 -2.6 Fe-S biogenesis protein NfuA compare
DZA65_RS09095 -1.1 -2.6 hypothetical protein compare
DZA65_RS10965 -1.1 -7.0 anthranilate synthase component 1 compare
DZA65_RS12770 -1.0 -2.7 acid resistance repetitive basic protein Asr compare
DZA65_RS14640 -1.0 -3.0 helix-turn-helix transcriptional regulator compare
DZA65_RS03410 -1.0 -2.4 tRNA-Leu compare
DZA65_RS10030 -1.0 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
DZA65_RS15335 -1.0 -7.9 amidophosphoribosyltransferase compare
DZA65_RS10165 -1.0 -4.3 DUF496 family protein compare
DZA65_RS06335 -1.0 -1.5 DUF1778 domain-containing protein compare
DZA65_RS22005 -1.0 -5.8 inorganic phosphate transporter PitA compare
DZA65_RS03255 -1.0 -1.7 polyribonucleotide nucleotidyltransferase compare
DZA65_RS22705 -1.0 -3.5 membrane protein insertion efficiency factor YidD compare
DZA65_RS07665 -1.0 -2.9 AlpA family transcriptional regulator compare
DZA65_RS18650 -1.0 -3.2 alanine racemase compare
DZA65_RS00360 -1.0 -4.6 MarR family transcriptional regulator compare
DZA65_RS22835 -1.0 -2.7 hypothetical protein compare
DZA65_RS22350 -1.0 -7.4 transcriptional regulator AsnC compare
DZA65_RS18145 -1.0 -6.7 GTP diphosphokinase compare
DZA65_RS13615 -0.9 -6.7 PTS glucose transporter subunit IIBC compare
DZA65_RS19260 -0.9 -2.7 thiamine ABC transporter ATP-binding protein ThiQ compare
DZA65_RS13240 -0.9 -1.1 LysR family transcriptional regulator compare
DZA65_RS13450 -0.9 -7.1 aspartate/tyrosine/aromatic aminotransferase compare
DZA65_RS18320 -0.9 -3.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DZA65_RS13040 -0.9 -2.5 LapA family protein compare
DZA65_RS17685 -0.9 -2.8 tRNA-Thr compare
DZA65_RS21790 -0.9 -2.4 sulfurtransferase TusA compare
DZA65_RS00790 -0.9 -2.1 glycosyltransferase family 4 protein compare
DZA65_RS10050 -0.9 -2.7 histidinol-phosphate transaminase compare
DZA65_RS03405 -0.9 -1.1 tRNA-Leu compare
DZA65_RS12745 -0.9 -3.5 sodium-potassium/proton antiporter ChaA compare
DZA65_RS17145 -0.9 -3.9 polynucleotide adenylyltransferase PcnB compare
DZA65_RS21075 -0.9 -2.8 magnesium/cobalt transporter CorA compare
DZA65_RS05840 -0.9 -2.0 peroxiredoxin C compare
DZA65_RS01725 -0.9 -5.4 3',5'-cyclic-AMP phosphodiesterase compare
DZA65_RS22195 -0.8 -5.2 ribosome-dependent GTPase TypA compare
DZA65_RS17265 -0.8 -6.6 hydroxyacylglutathione hydrolase compare
DZA65_RS21265 -0.8 -2.9 thioredoxin TrxA compare
DZA65_RS04370 -0.8 -4.0 cysteine synthase A compare
DZA65_RS09910 -0.8 -2.8 thioredoxin-disulfide reductase compare
DZA65_RS01365 -0.8 -6.3 sodium/pantothenate symporter compare
DZA65_RS22240 -0.8 -5.9 thiol:disulfide interchange protein DsbA compare
DZA65_RS12020 -0.8 -2.8 ribonuclease toxin immunity protein CdiI compare
DZA65_RS21575 -0.8 -1.9 6-phosphofructokinase compare
DZA65_RS09990 -0.8 -1.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
DZA65_RS04230 -0.8 -5.0 outer membrane protein assembly factor BamE compare
DZA65_RS05165 -0.8 -1.2 hypothetical protein compare
DZA65_RS06115 -0.8 -7.3 multidrug efflux RND transporter permease subunit compare
DZA65_RS06275 -0.8 -4.1 transcriptional regulator RcsB compare
DZA65_RS16925 -0.8 -1.6 anti-sigma-E factor RseA compare
DZA65_RS11830 -0.8 -3.6 DNA-binding transcriptional regulator KdgR compare
DZA65_RS08855 -0.8 -1.2 hypothetical protein compare
DZA65_RS19465 -0.8 -5.7 transaldolase compare
DZA65_RS16635 -0.8 -1.9 outer membrane protein assembly factor BamB compare
DZA65_RS06660 -0.8 -1.9 tRNA-Met compare
DZA65_RS13465 -0.8 -6.0 L,D-transpeptidase compare
DZA65_RS21080 -0.8 -5.0 DNA helicase II compare
DZA65_RS03345 -0.8 -1.9 cysteine synthase family protein compare
DZA65_RS14835 -0.8 -1.3 N-acetyltransferase compare
DZA65_RS12910 -0.8 -4.8 transcriptional regulator TyrR compare
DZA65_RS09375 -0.8 -1.6 type II toxin-antitoxin system RelE/ParE family toxin compare
DZA65_RS10045 -0.8 -3.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
DZA65_RS15340 -0.8 -5.7 colicin V production protein compare
DZA65_RS06785 -0.8 -2.6 YbfA family protein compare
DZA65_RS10955 -0.8 -3.2 anthranilate phosphoribosyltransferase compare
DZA65_RS17985 -0.8 -2.3 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
DZA65_RS01550 -0.8 -3.6 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
DZA65_RS22295 -0.8 -5.9 ribokinase compare
DZA65_RS18020 -0.8 -5.1 RNA polymerase sigma factor RpoS compare
DZA65_RS17035 -0.8 -2.2 helix-turn-helix transcriptional regulator compare
DZA65_RS04700 -0.7 -1.5 transposase compare
DZA65_RS13115 -0.7 -3.9 lactoylglutathione lyase compare
DZA65_RS13870 -0.7 -4.3 flagellin compare
DZA65_RS06990 -0.7 -5.8 UDP-glucose 4-epimerase GalE compare
DZA65_RS18920 -0.7 -2.9 D-threonate 4-phosphate dehydrogenase compare
DZA65_RS21590 -0.7 -2.2 DNA mismatch repair protein MutT compare
DZA65_RS01015 -0.7 -2.8 helix-turn-helix transcriptional regulator compare
DZA65_RS06120 -0.7 -5.2 efflux RND transporter periplasmic adaptor subunit compare
DZA65_RS02300 -0.7 -1.5 type-1Ba cytolytic delta-endotoxin compare
DZA65_RS16265 -0.7 -1.2 hypothetical protein compare
DZA65_RS15515 -0.7 -4.3 phospholipid-binding lipoprotein MlaA compare
DZA65_RS21770 -0.7 -3.1 16S rRNA (guanine(966)-N(2))-methyltransferase compare
DZA65_RS18085 -0.7 -5.2 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
DZA65_RS01545 -0.7 -2.6 phospholipid ABC transporter ATP-binding protein MlaF compare
DZA65_RS19020 -0.7 -4.7 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
DZA65_RS11155 -0.7 -1.5 DUF1283 family protein compare
DZA65_RS08935 -0.7 -4.8 NAD-dependent malic enzyme compare
DZA65_RS10980 -0.7 -2.6 23S rRNA pseudouridine(2605) synthase RluB compare
DZA65_RS01555 -0.7 -5.1 outer membrane lipid asymmetry maintenance protein MlaD compare
DZA65_RS19195 -0.7 -2.6 leu operon leader peptide compare
DZA65_RS10950 -0.7 -4.0 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DZA65_RS01370 -0.7 -1.1 YhdT family protein compare
DZA65_RS16260 -0.7 -3.0 VOC family protein compare
DZA65_RS12245 -0.7 -1.7 type III secretion system export apparatus subunit SctS compare
DZA65_RS03130 -0.7 -3.4 malate dehydrogenase compare
DZA65_RS10025 -0.7 -2.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
DZA65_RS01745 -0.7 -4.1 NAD(P)H-dependent oxidoreductase compare
DZA65_RS07980 -0.7 -1.5 phosphonate C-P lyase system protein PhnL compare
DZA65_RS16945 -0.7 -4.7 ATP-dependent RNA helicase SrmB compare
DZA65_RS22060 -0.7 -1.6 DUF1471 domain-containing protein compare
DZA65_RS06820 -0.7 -1.2 citrate synthase compare
DZA65_RS04985 -0.7 -2.6 hypothetical protein compare
DZA65_RS06215 -0.7 -2.4 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK compare
DZA65_RS20840 -0.6 -2.0 two-component system response regulator OmpR compare
DZA65_RS03335 -0.6 -2.6 YggS family pyridoxal phosphate-dependent enzyme compare
DZA65_RS03585 -0.6 -2.9 helix-turn-helix transcriptional regulator compare
DZA65_RS06495 -0.6 -2.5 M15 family metallopeptidase compare
DZA65_RS02685 -0.6 -3.1 Cd(II)/Pb(II)-responsive transcriptional regulator compare
DZA65_RS03210 -0.6 -1.0 preprotein translocase subunit SecG compare
DZA65_RS11585 -0.6 -2.5 septum site-determining protein MinC compare
DZA65_RS04390 -0.6 -2.1 accessory factor UbiK family protein compare
DZA65_RS08595 -0.6 -1.2 type VI secretion system-associated protein TagO compare
DZA65_RS12860 -0.6 -4.6 zinc transporter ZntB compare
DZA65_RS13690 -0.6 -3.5 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
DZA65_RS20800 -0.6 -3.4 ADP compounds hydrolase NudE compare
DZA65_RS21545 -0.6 -1.8 DUF805 domain-containing protein compare
DZA65_RS07800 -0.6 -2.4 DUF4160 domain-containing protein compare
DZA65_RS08140 -0.6 -1.0 type II toxin-antitoxin system HicB family antitoxin compare
DZA65_RS07450 -0.6 -2.2 DUF2513 domain-containing protein compare
DZA65_RS21565 -0.6 -4.2 agmatine deiminase compare
DZA65_RS09555 -0.6 -2.4 proteinase inhibitor compare
DZA65_RS08135 -0.6 -1.2 RraA family protein compare
DZA65_RS18775 -0.6 -1.1 phage tail protein compare


Specific Phenotypes

For 7 genes in this experiment

For control kanamycin in Dickeya dianthicola ME23

For control kanamycin across organisms