Experiment setATCH169 for Dickeya dianthicola ME23
PDB
Group: controlMedia: Potato Dextrose Broth + kanamycin (50 ug/ml)
Culturing: DdiaME23, 24 well plate
By: Tyler Helmann on 11/16/20
Specific Phenotypes
For 7 genes in this experiment
For control kanamycin in Dickeya dianthicola ME23
For control kanamycin across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| D-gluconate and ketogluconates metabolism | 1 |
| D-ribose utilization | 1 |
| Glycerolipid and Glycerophospholipid Metabolism in Bacteria | 1 |
| Transport of Manganese | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Aminophosphonate metabolism
- High-mannose type N-glycan biosynthesis
- Nucleotide sugars metabolism
- Glycerophospholipid metabolism
- Sphingolipid metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| cardiolipin biosynthesis II | 3 | 3 | 1 |
| cardiolipin biosynthesis I | 3 | 3 | 1 |
| cardiolipin and phosphatidylethanolamine biosynthesis (Xanthomonas) | 4 | 3 | 1 |
| superpathway of cardiolipin biosynthesis (bacteria) | 13 | 10 | 2 |
| superpathway of phospholipid biosynthesis III (E. coli) | 12 | 11 | 1 |