Experiment setATCH168 for Dickeya dianthicola ME23

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PDB

200 most important genes:

  gene name fitness t score description  
DZA65_RS04310 -3.4 -12.5 Dyp-type peroxidase compare
DZA65_RS00800 -3.1 -6.3 O-antigen ligase family protein compare
DZA65_RS21420 -3.1 -18.1 glutamate racemase compare
DZA65_RS22335 -3.0 -23.4 low affinity potassium transporter Kup compare
DZA65_RS05310 -2.7 -9.9 thymidylate synthase compare
DZA65_RS06895 -2.6 -6.8 Tol-Pal system protein TolQ compare
DZA65_RS13085 -2.5 -5.7 pyridoxamine 5'-phosphate oxidase compare
DZA65_RS13750 -2.4 -12.2 glucans biosynthesis glucosyltransferase MdoH compare
DZA65_RS22640 -2.4 -8.1 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
DZA65_RS13755 -2.4 -9.0 glucan biosynthesis protein G compare
DZA65_RS22635 -2.3 -4.7 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
DZA65_RS16090 -2.3 -2.4 sulfurtransferase TusE compare
DZA65_RS21450 -2.1 -9.1 DNA-binding transcriptional regulator OxyR compare
DZA65_RS20970 -2.1 -10.9 gluconate operon transcriptional repressor GntR compare
DZA65_RS21370 -2.0 -9.4 DUF413 domain-containing protein compare
DZA65_RS04255 -2.0 -12.4 divalent metal cation transporter compare
DZA65_RS01370 -2.0 -2.6 YhdT family protein compare
DZA65_RS21090 -1.9 -2.7 tyrosine recombinase XerC compare
DZA65_RS03260 -1.9 -6.4 lipoprotein NlpI compare
DZA65_RS21610 -1.9 -8.7 envelope stress response regulator transcription factor CpxR compare
DZA65_RS01350 -1.9 -3.1 DNA-binding transcriptional regulator Fis compare
DZA65_RS03210 -1.8 -2.8 preprotein translocase subunit SecG compare
DZA65_RS01525 -1.8 -4.4 LPS export ABC transporter periplasmic protein LptC compare
DZA65_RS19540 -1.8 -8.6 phosphoglycerate dehydrogenase compare
DZA65_RS12505 -1.8 -6.5 carboxy terminal-processing peptidase compare
DZA65_RS10915 -1.7 -6.3 septation protein A compare
DZA65_RS03405 -1.7 -2.2 tRNA-Leu compare
DZA65_RS02490 -1.7 -8.5 phosphoserine phosphatase compare
DZA65_RS06900 -1.7 -1.6 colicin uptake protein TolR compare
DZA65_RS21375 -1.7 -10.6 HTH-type transcriptional regulator HdfR compare
DZA65_RS06685 -1.7 -11.6 asparagine synthase B compare
DZA65_RS11020 -1.7 -9.1 HTH-type transcriptional regulator CysB compare
DZA65_RS10940 -1.6 -8.1 tryptophan synthase subunit alpha compare
DZA65_RS06025 -1.6 -2.9 DNA-binding protein HU-beta compare
DZA65_RS01510 -1.6 -5.6 RNA polymerase factor sigma-54 compare
DZA65_RS01500 -1.6 -6.4 PTS IIA-like nitrogen regulatory protein PtsN compare
DZA65_RS16045 -1.5 -6.0 polyphosphate kinase 1 compare
DZA65_RS21790 -1.5 -2.5 sulfurtransferase TusA compare
DZA65_RS00035 -1.5 -11.7 oligopeptidase A compare
DZA65_RS15370 -1.5 -5.7 tRNA pseudouridine(38-40) synthase TruA compare
DZA65_RS16960 -1.5 -3.1 tRNA-Ala compare
DZA65_RS11145 -1.5 -5.3 ROK family transcriptional regulator compare
DZA65_RS15380 -1.5 -7.9 4-phosphoerythronate dehydrogenase PdxB compare
DZA65_RS06745 -1.5 -8.5 alpha-D-glucose phosphate-specific phosphoglucomutase compare
DZA65_RS02680 -1.5 -7.5 heavy metal translocating P-type ATPase compare
DZA65_RS16715 -1.5 -1.4 Fe-S cluster assembly scaffold IscU compare
DZA65_RS16705 -1.5 -4.8 co-chaperone HscB compare
DZA65_RS22210 -1.5 -8.5 nitrogen regulation protein NR(I) compare
DZA65_RS20355 -1.5 -5.3 Trk system potassium transporter TrkA compare
DZA65_RS11275 -1.4 -2.3 hypothetical protein compare
DZA65_RS04355 -1.4 -7.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DZA65_RS17245 -1.3 -5.8 tRNA-Asp compare
DZA65_RS11925 -1.3 -1.9 DNA-damage-inducible protein J compare
DZA65_RS05445 -1.3 -7.1 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
DZA65_RS12020 -1.3 -3.9 ribonuclease toxin immunity protein CdiI compare
DZA65_RS20550 -1.2 -3.1 sulfurtransferase complex subunit TusC compare
DZA65_RS13240 -1.2 -1.7 LysR family transcriptional regulator compare
DZA65_RS16810 -1.2 -6.0 nitrogen regulatory protein P-II compare
DZA65_RS22160 -1.2 -8.1 ATP-dependent DNA helicase RecG compare
DZA65_RS22290 -1.2 -10.3 substrate-binding domain-containing protein compare
DZA65_RS07170 -1.2 -4.5 UTP--glucose-1-phosphate uridylyltransferase compare
DZA65_RS15520 -1.2 -7.3 tRNA-Arg compare
DZA65_RS13425 -1.2 -4.9 nicotinate phosphoribosyltransferase compare
DZA65_RS03525 -1.2 -1.6 hypothetical protein compare
DZA65_RS16370 -1.1 -1.8 hypothetical protein compare
DZA65_RS09515 -1.1 -3.4 hypothetical protein compare
DZA65_RS08270 -1.1 -2.2 biopolymer transporter ExbD compare
DZA65_RS16885 -1.1 -4.6 pyridoxine 5'-phosphate synthase compare
DZA65_RS10945 -1.1 -7.3 tryptophan synthase subunit beta compare
DZA65_RS14025 -1.1 -3.9 flagella synthesis chaperone protein FlgN compare
DZA65_RS03255 -1.1 -1.7 polyribonucleotide nucleotidyltransferase compare
DZA65_RS22005 -1.1 -6.3 inorganic phosphate transporter PitA compare
DZA65_RS10025 -1.1 -3.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
DZA65_RS18145 -1.0 -7.3 GTP diphosphokinase compare
DZA65_RS11155 -1.0 -2.8 DUF1283 family protein compare
DZA65_RS05900 -1.0 -1.6 transcription antitermination factor NusB compare
DZA65_RS10165 -1.0 -4.0 DUF496 family protein compare
DZA65_RS09395 -1.0 -1.8 plasmid stabilization protein compare
DZA65_RS13125 -1.0 -3.2 Grx4 family monothiol glutaredoxin compare
DZA65_RS19465 -1.0 -7.3 transaldolase compare
DZA65_RS10890 -1.0 -5.9 cardiolipin synthase compare
DZA65_RS16225 -1.0 -7.4 LacI family transcriptional regulator compare
DZA65_RS19495 -1.0 -1.9 two-component system response regulator ArcA compare
DZA65_RS13615 -1.0 -7.2 PTS glucose transporter subunit IIBC compare
DZA65_RS19515 -1.0 -5.9 non-canonical purine NTP phosphatase compare
DZA65_RS10965 -1.0 -5.8 anthranilate synthase component 1 compare
DZA65_RS10950 -1.0 -5.6 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DZA65_RS12910 -1.0 -5.7 transcriptional regulator TyrR compare
DZA65_RS10030 -1.0 -2.3 imidazole glycerol phosphate synthase subunit HisF compare
DZA65_RS11955 -0.9 -2.5 hypothetical protein compare
DZA65_RS14310 -0.9 -1.5 LysR family transcriptional regulator compare
DZA65_RS06660 -0.9 -2.0 tRNA-Met compare
DZA65_RS13385 -0.9 -3.1 cell division protein ZapC compare
DZA65_RS15335 -0.9 -7.5 amidophosphoribosyltransferase compare
DZA65_RS21265 -0.9 -2.7 thioredoxin TrxA compare
DZA65_RS16710 -0.9 -1.6 iron-sulfur cluster assembly protein IscA compare
DZA65_RS02945 -0.9 -1.4 transcriptional regulator ExuR compare
DZA65_RS13450 -0.9 -6.6 aspartate/tyrosine/aromatic aminotransferase compare
DZA65_RS00675 -0.9 -2.0 isoaspartyl peptidase/L-asparaginase compare
DZA65_RS16610 -0.8 -5.3 IMP dehydrogenase compare
DZA65_RS00790 -0.8 -1.7 glycosyltransferase family 4 protein compare
DZA65_RS22965 -0.8 -1.7 hypothetical protein compare
DZA65_RS07915 -0.8 -2.0 aspartate/glutamate racemase family protein compare
DZA65_RS13870 -0.8 -4.3 flagellin compare
DZA65_RS16635 -0.8 -2.0 outer membrane protein assembly factor BamB compare
DZA65_RS19070 -0.8 -3.0 DNA gyrase inhibitor YacG compare
DZA65_RS11865 -0.8 -2.6 tRNA 2-thiouridine(34) synthase MnmA compare
DZA65_RS22195 -0.8 -4.8 ribosome-dependent GTPase TypA compare
DZA65_RS10485 -0.8 -2.8 membrane protein compare
DZA65_RS18320 -0.8 -3.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DZA65_RS20255 -0.8 -4.4 glyoxylate bypass operon transcriptional repressor IclR compare
DZA65_RS06820 -0.8 -2.1 citrate synthase compare
DZA65_RS14665 -0.8 -4.7 LysR family transcriptional regulator compare
DZA65_RS22350 -0.8 -6.3 transcriptional regulator AsnC compare
DZA65_RS01545 -0.8 -3.0 phospholipid ABC transporter ATP-binding protein MlaF compare
DZA65_RS11590 -0.8 -3.6 septum site-determining protein MinD compare
DZA65_RS21575 -0.8 -1.4 6-phosphofructokinase compare
DZA65_RS20005 -0.8 -1.2 helix-turn-helix transcriptional regulator compare
DZA65_RS20545 -0.8 -1.8 sulfurtransferase complex subunit TusB compare
DZA65_RS22295 -0.8 -5.9 ribokinase compare
DZA65_RS03130 -0.7 -3.7 malate dehydrogenase compare
DZA65_RS21080 -0.7 -4.6 DNA helicase II compare
DZA65_RS02150 -0.7 -2.9 helix-turn-helix transcriptional regulator compare
DZA65_RS21770 -0.7 -3.8 16S rRNA (guanine(966)-N(2))-methyltransferase compare
DZA65_RS03340 -0.7 -2.6 adenine phosphoribosyltransferase compare
DZA65_RS13965 -0.7 -5.7 flagellar hook-associated protein FlgK compare
DZA65_RS10055 -0.7 -2.7 histidinol dehydrogenase compare
DZA65_RS03410 -0.7 -1.2 tRNA-Leu compare
DZA65_RS14445 -0.7 -1.7 hypothetical protein compare
DZA65_RS10920 -0.7 -3.5 UPF0259 family protein compare
DZA65_RS06115 -0.7 -6.1 multidrug efflux RND transporter permease subunit compare
DZA65_RS02685 -0.7 -3.2 Cd(II)/Pb(II)-responsive transcriptional regulator compare
DZA65_RS18650 -0.7 -2.2 alanine racemase compare
DZA65_RS06990 -0.7 -5.1 UDP-glucose 4-epimerase GalE compare
DZA65_RS02870 -0.7 -2.3 chorismate lyase compare
DZA65_RS08845 -0.7 -1.8 hypothetical protein compare
DZA65_RS01745 -0.7 -4.0 NAD(P)H-dependent oxidoreductase compare
DZA65_RS13785 -0.7 -2.9 macrodomain Ter protein MatP compare
DZA65_RS21745 -0.7 -3.1 aspartate 1-decarboxylase autocleavage activator PanM compare
DZA65_RS01365 -0.7 -5.2 sodium/pantothenate symporter compare
DZA65_RS05260 -0.7 -3.5 DUF2884 domain-containing protein compare
DZA65_RS06120 -0.7 -5.0 efflux RND transporter periplasmic adaptor subunit compare
DZA65_RS22240 -0.7 -4.7 thiol:disulfide interchange protein DsbA compare
DZA65_RS02505 -0.7 -1.8 peptide chain release factor 3 compare
DZA65_RS22705 -0.7 -1.9 membrane protein insertion efficiency factor YidD compare
DZA65_RS13465 -0.7 -5.0 L,D-transpeptidase compare
DZA65_RS18085 -0.7 -4.9 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
DZA65_RS05975 -0.7 -1.3 cytochrome o ubiquinol oxidase subunit III compare
DZA65_RS19290 -0.7 -1.8 hypothetical protein compare
DZA65_RS05860 -0.7 -1.8 preprotein translocase subunit YajC compare
DZA65_RS14030 -0.7 -2.3 flagellar protein FlhE compare
DZA65_RS12745 -0.6 -2.7 sodium-potassium/proton antiporter ChaA compare
DZA65_RS06495 -0.6 -2.8 M15 family metallopeptidase compare
DZA65_RS20860 -0.6 -2.9 RNA-binding transcriptional accessory protein compare
DZA65_RS20895 -0.6 -3.3 rhomboid family intramembrane serine protease GlpG compare
DZA65_RS20795 -0.6 -4.7 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA compare
DZA65_RS22550 -0.6 -3.4 phosphate ABC transporter permease PstA compare
DZA65_RS06275 -0.6 -3.0 transcriptional regulator RcsB compare
DZA65_RS01555 -0.6 -4.4 outer membrane lipid asymmetry maintenance protein MlaD compare
DZA65_RS16850 -0.6 -1.8 hypothetical protein compare
DZA65_RS15515 -0.6 -3.5 phospholipid-binding lipoprotein MlaA compare
DZA65_RS05090 -0.6 -1.0 hypothetical protein compare
DZA65_RS14505 -0.6 -2.3 hypothetical protein compare
DZA65_RS01725 -0.6 -3.8 3',5'-cyclic-AMP phosphodiesterase compare
DZA65_RS07805 -0.6 -3.2 addiction module antitoxin compare
DZA65_RS17595 -0.6 -2.0 hypothetical protein compare
DZA65_RS16910 -0.6 -3.2 elongation factor 4 compare
DZA65_RS01710 -0.6 -1.1 outer membrane channel protein TolC compare
DZA65_RS21075 -0.6 -2.4 magnesium/cobalt transporter CorA compare
DZA65_RS19020 -0.6 -3.8 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
DZA65_RS17005 -0.6 -2.5 TSUP family transporter compare
DZA65_RS16115 -0.6 -4.2 methylglyoxal synthase compare
DZA65_RS19375 -0.6 -2.1 LysE family transporter compare
DZA65_RS00360 -0.6 -2.9 MarR family transcriptional regulator compare
DZA65_RS09365 -0.6 -2.4 hypothetical protein compare
DZA65_RS11440 -0.6 -3.6 MFS transporter compare
DZA65_RS19520 -0.6 -2.0 trp operon repressor compare
DZA65_RS08935 -0.6 -4.0 NAD-dependent malic enzyme compare
DZA65_RS09240 -0.6 -1.0 biotin carboxyl carrier domain-containing protein compare
DZA65_RS13690 -0.6 -3.5 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
DZA65_RS17145 -0.6 -2.9 polynucleotide adenylyltransferase PcnB compare
DZA65_RS20805 -0.6 -0.5 intracellular growth attenuator family protein compare
DZA65_RS13040 -0.6 -1.6 LapA family protein compare
DZA65_RS01560 -0.6 -3.2 phospholipid-binding protein MlaC compare
DZA65_RS06005 -0.6 -3.1 trigger factor compare
DZA65_RS00575 -0.6 -3.5 YicC family protein compare
DZA65_RS10980 -0.6 -2.1 23S rRNA pseudouridine(2605) synthase RluB compare
DZA65_RS17265 -0.6 -4.4 hydroxyacylglutathione hydrolase compare
DZA65_RS04215 -0.6 -2.0 SsrA-binding protein SmpB compare
DZA65_RS10615 -0.5 -2.8 non-heme ferritin compare
DZA65_RS01550 -0.5 -2.7 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
DZA65_RS02140 -0.5 -3.1 RNA-directed DNA polymerase compare
DZA65_RS08855 -0.5 -0.9 hypothetical protein compare
DZA65_RS22990 -0.5 -1.5 hypothetical protein compare
DZA65_RS19655 -0.5 -0.9 adenylosuccinate synthase compare
DZA65_RS12230 -0.5 -1.2 HrpP protein compare
DZA65_RS01635 -0.5 -4.8 glutamate synthase large subunit compare
DZA65_RS19300 -0.5 -1.4 Hcp family type VI secretion system effector compare
DZA65_RS03775 -0.5 -1.7 MarR family transcriptional regulator compare
DZA65_RS06470 -0.5 -2.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare


Specific Phenotypes

For 5 genes in this experiment

For control kanamycin in Dickeya dianthicola ME23

For control kanamycin across organisms