Experiment setATCH165 for Dickeya dadantii 3937

Compare to:

Upstate

200 most important genes:

  gene name fitness t score description  
DDA3937_RS10140 -4.6 -5.5 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DDA3937_RS18130 -4.1 -4.7 3-isopropylmalate dehydratase small subunit compare
DDA3937_RS10985 -3.5 -4.4 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS10950 -3.2 -8.3 fumarate/nitrate reduction transcriptional regulator Fnr compare
DDA3937_RS11335 -3.1 -8.3 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DDA3937_RS00600 -3.1 -2.5 DcrB family lipoprotein compare
DDA3937_RS14385 -3.0 -10.1 phosphate acetyltransferase compare
DDA3937_RS19615 -2.9 -6.1 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS19015 -2.8 -11.0 glucose-6-phosphate isomerase compare
DDA3937_RS04960 -2.8 -3.2 thymidylate synthase compare
DDA3937_RS18125 -2.7 -13.0 3-isopropylmalate dehydratase large subunit compare
DDA3937_RS14910 -2.7 -11.9 beta-galactosidase compare
DDA3937_RS15420 -2.6 -8.0 IMP dehydrogenase compare
DDA3937_RS20455 -2.4 -4.7 putative lipopolysaccharide heptosyltransferase III compare
DDA3937_RS09650 -2.4 -11.6 pyruvate formate lyase 1-activating protein compare
DDA3937_RS01820 -2.4 -4.7 tol-pal system-associated acyl-CoA thioesterase compare
DDA3937_RS06040 -2.4 -1.6 DnaA inactivator Hda compare
DDA3937_RS14380 -2.3 -4.9 acetate kinase compare
DDA3937_RS06615 -2.3 -13.3 UDP-glucose 4-epimerase GalE compare
DDA3937_RS18120 -2.3 -10.5 3-isopropylmalate dehydrogenase compare
DDA3937_RS00580 -2.2 -10.9 2-dehydro-3-deoxygluconokinase compare
DDA3937_RS19510 -2.2 -4.0 peptidylprolyl isomerase A compare
DDA3937_RS01740 -2.1 -4.0 outer membrane channel protein TolC compare
DDA3937_RS05150 -2.1 -6.2 sigma E protease regulator RseP compare
DDA3937_RS01600 -2.1 -10.2 outer membrane-stress sensor serine endopeptidase DegS compare
DDA3937_RS15765 -2.1 -14.1 RNA polymerase sigma factor RpoE compare
DDA3937_RS11035 -2.0 -4.8 redox-regulated ATPase YchF compare
DDA3937_RS02425 -2.0 -8.0 phosphoserine phosphatase compare
DDA3937_RS18585 -2.0 -1.8 adenylosuccinate synthase compare
DDA3937_RS14630 -2.0 -4.0 tRNA-Arg compare
DDA3937_RS06350 -1.9 -5.1 replication initiation negative regulator SeqA compare
DDA3937_RS06075 -1.9 -3.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DDA3937_RS03285 -1.9 -2.2 protein YgfX compare
DDA3937_RS09655 -1.9 -12.1 formate C-acetyltransferase compare
DDA3937_RS06025 -1.9 -8.4 phosphoribosylformylglycinamidine cyclo-ligase compare
DDA3937_RS21310 -1.8 -3.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DDA3937_RS17160 -1.8 -9.0 outer membrane protein assembly factor compare
DDA3937_RS04125 -1.8 -4.3 acetyltransferase compare
DDA3937_RS00640 -1.8 -2.6 cell division ATP-binding protein FtsE compare
DDA3937_RS17835 -1.8 -6.1 D-threonate 4-phosphate dehydrogenase compare
DDA3937_RS06295 -1.8 -8.2 asparagine synthase B compare
DDA3937_RS18010 -1.8 -1.3 DUF721 domain-containing protein compare
DDA3937_RS18275 -1.7 -7.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
DDA3937_RS15655 -1.7 -11.2 phosphoribosylformylglycinamidine synthase compare
DDA3937_RS01530 -1.7 -4.5 RNA polymerase factor sigma-54 compare
DDA3937_RS13490 -1.7 -2.0 anti-sigma-28 factor FlgM compare
DDA3937_RS00910 -1.7 -9.8 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
DDA3937_RS14435 -1.7 -13.5 amidophosphoribosyltransferase compare
DDA3937_RS17830 -1.6 -2.2 DeoR/GlpR transcriptional regulator compare
DDA3937_RS17155 -1.6 -8.0 translocation/assembly module TamB compare
DDA3937_RS05645 -1.6 -10.3 ATP-dependent protease ATP-binding subunit ClpX compare
DDA3937_RS01220 -1.6 -10.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DDA3937_RS05160 -1.6 -2.0 molecular chaperone Skp compare
DDA3937_RS14475 -1.6 -5.3 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS06770 -1.6 -2.2 oligosaccharide flippase family protein compare
DDA3937_RS09590 -1.6 -4.4 leucine-responsive transcriptional regulator Lrp compare
DDA3937_RS09585 -1.5 -1.9 thioredoxin-disulfide reductase compare
DDA3937_RS18480 -1.5 -4.5 phosphoglycerate dehydrogenase compare
DDA3937_RS09120 -1.5 -1.7 YejL family protein compare
DDA3937_RS12525 -1.5 -6.1 orotidine-5'-phosphate decarboxylase compare
DDA3937_RS06610 -1.5 -6.3 galactose-1-phosphate uridylyltransferase compare
DDA3937_RS10325 -1.5 -7.6 formyltetrahydrofolate deformylase compare
DDA3937_RS15815 -1.5 -1.2 tRNA-Val compare
DDA3937_RS06715 -1.5 -2.6 protein-tyrosine-phosphatase compare
DDA3937_RS18690 -1.5 -5.5 glycosyltransferase compare
DDA3937_RS09670 -1.5 -4.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
DDA3937_RS11715 -1.5 -2.7 hypothetical protein compare
DDA3937_RS02915 -1.5 -4.9 TetR/AcrR family transcriptional regulator compare
DDA3937_RS00135 -1.4 -1.4 glutamate--ammonia ligase compare
DDA3937_RS05775 -1.4 -1.9 adenine phosphoribosyltransferase compare
DDA3937_RS20415 -1.4 -3.1 rhodanese-like domain-containing protein compare
DDA3937_RS18675 -1.4 -3.5 ABC transporter ATP-binding protein compare
DDA3937_RS13215 -1.4 -4.8 glucans biosynthesis glucosyltransferase MdoH compare
DDA3937_RS18410 -1.4 -4.9 homoserine kinase compare
DDA3937_RS06695 -1.4 -5.6 dCTP deaminase compare
DDA3937_RS01550 -1.3 -5.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DDA3937_RS13515 -1.3 -7.7 protein phosphatase CheZ compare
DDA3937_RS13110 -1.3 -5.5 beta-ketoacyl-ACP synthase II compare
DDA3937_RS10460 -1.3 -7.1 tryptophan synthase subunit alpha compare
DDA3937_RS16110 -1.3 -9.7 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DDA3937_RS12790 -1.3 -1.8 hotdog fold thioesterase compare
DDA3937_RS01000 -1.3 -2.9 glutamate racemase compare
DDA3937_RS15110 -1.3 -4.5 5-(carboxyamino)imidazole ribonucleotide synthase compare
DDA3937_RS13525 -1.3 -6.8 chemotaxis response regulator protein-glutamate methylesterase compare
DDA3937_RS01810 -1.3 -6.4 DedA family protein compare
DDA3937_RS10465 -1.3 -5.2 tryptophan synthase subunit beta compare
DDA3937_RS01215 -1.2 -5.7 phosphoribosylamine--glycine ligase compare
DDA3937_RS18305 -1.2 -8.1 carbamoyl-phosphate synthase large subunit compare
DDA3937_RS14440 -1.2 -6.7 colicin V production protein compare
DDA3937_RS20470 -1.2 -5.9 glycosyltransferase family 9 protein compare
DDA3937_RS02740 -1.2 -3.6 chorismate lyase compare
DDA3937_RS16195 -1.2 -3.1 glutamate--cysteine ligase compare
DDA3937_RS18310 -1.2 -6.8 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DDA3937_RS18115 -1.2 -6.6 2-isopropylmalate synthase compare
DDA3937_RS03420 -1.2 -2.1 sugar transferase compare
DDA3937_RS00900 -1.2 -3.8 cell division protein ZapB compare
DDA3937_RS00560 -1.2 -5.9 insulinase family protein compare
DDA3937_RS17425 -1.2 -7.1 diaminopimelate decarboxylase compare
DDA3937_RS11725 -1.2 -1.9 Hcp family type VI secretion system effector compare
DDA3937_RS03300 -1.2 -1.5 site-specific tyrosine recombinase XerD compare
DDA3937_RS20475 -1.2 -1.3 glycosyltransferase family 4 protein compare
DDA3937_RS12610 -1.2 -3.3 Grx4 family monothiol glutaredoxin compare
DDA3937_RS18670 -1.2 -3.2 ABC transporter permease compare
DDA3937_RS07750 -1.2 -2.8 iron-siderophore ABC transporter substrate-binding protein compare
DDA3937_RS05640 -1.2 -6.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
DDA3937_RS13170 -1.2 -3.6 dihydroorotase compare
DDA3937_RS00140 -1.1 -4.6 ribosome-dependent GTPase TypA compare
DDA3937_RS03465 -1.1 -6.9 Na+/H+ antiporter compare
DDA3937_RS13205 -1.1 -2.9 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
DDA3937_RS01505 -1.1 -1.9 nucleoside diphosphate kinase regulator compare
DDA3937_RS19880 -1.1 -3.9 DNA helicase II compare
DDA3937_RS09575 -1.1 -1.0 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
DDA3937_RS15910 -1.1 -1.7 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
DDA3937_RS06605 -1.1 -4.6 galactokinase compare
DDA3937_RS20535 -1.1 -6.7 orotate phosphoribosyltransferase compare
DDA3937_RS12855 -1.1 -3.4 quinone-dependent dihydroorotate dehydrogenase compare
DDA3937_RS10560 -1.1 -3.8 electron transport complex subunit RsxD compare
DDA3937_RS17015 -1.1 -9.3 GTP diphosphokinase compare
DDA3937_RS13345 -1.1 -4.8 flagellar filament capping protein FliD compare
DDA3937_RS04480 -1.1 -5.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DDA3937_RS21375 -1.0 -3.5 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
DDA3937_RS16555 -1.0 -5.6 esterase FrsA compare
DDA3937_RS00645 -1.0 -4.3 cell division protein FtsX compare
DDA3937_RS05105 -1.0 -2.9 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
DDA3937_RS19395 -1.0 -5.5 peptidylprolyl isomerase compare
DDA3937_RS18655 -1.0 -6.2 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
DDA3937_RS11330 -1.0 -5.4 5-dehydro-4-deoxy-D-glucuronate isomerase compare
DDA3937_RS10435 -1.0 -1.3 septation protein A compare
DDA3937_RS02835 -1.0 -4.8 altronate dehydratase compare
DDA3937_RS18425 -1.0 -6.4 two-component system response regulator ArcA compare
DDA3937_RS08475 -1.0 -4.5 molybdopterin molybdotransferase MoeA compare
DDA3937_RS08565 -1.0 -1.8 GTP 3',8-cyclase MoaA compare
DDA3937_RS08470 -1.0 -4.4 molybdopterin-synthase adenylyltransferase MoeB compare
DDA3937_RS19620 -1.0 -1.4 two-component system response regulator OmpR compare
DDA3937_RS18600 -1.0 -1.4 FtsH protease activity modulator HflK compare
DDA3937_RS05470 -1.0 -2.4 tRNA guanosine(34) transglycosylase Tgt compare
DDA3937_RS10125 -0.9 -3.0 pyruvate kinase compare
DDA3937_RS05895 -0.9 -3.2 transcriptional regulator RcsB compare
DDA3937_RS02210 -0.9 -4.0 type-1Ba cytolytic delta-endotoxin compare
DDA3937_RS04945 -0.9 -4.5 RNA pyrophosphohydrolase compare
DDA3937_RS16245 -0.9 -2.0 recombinase RecA compare
DDA3937_RS16935 -0.9 -1.7 phosphoadenylyl-sulfate reductase compare
DDA3937_RS17180 -0.9 -4.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
DDA3937_RS01925 -0.9 -5.7 aspartate carbamoyltransferase compare
DDA3937_RS07760 -0.9 -1.8 iron ABC transporter permease compare
DDA3937_RS06235 -0.9 -4.4 CNNM family magnesium/cobalt transport protein CorC compare
DDA3937_RS15720 -0.9 -3.6 pyridoxine 5'-phosphate synthase compare
DDA3937_RS23485 -0.9 -1.1 hypothetical protein compare
DDA3937_RS13220 -0.9 -2.7 glucan biosynthesis protein G compare
DDA3937_RS01875 -0.9 -6.3 anaerobic ribonucleoside-triphosphate reductase compare
DDA3937_RS15545 -0.9 -1.0 cysteine desulfurase compare
DDA3937_RS12575 -0.9 -1.7 pyridoxamine 5'-phosphate oxidase compare
DDA3937_RS13545 -0.9 -7.1 chemotaxis protein CheA compare
DDA3937_RS18005 -0.9 -2.4 secA regulator SecM compare
DDA3937_RS23190 -0.9 -1.1 hypothetical protein compare
DDA3937_RS13540 -0.9 -4.2 chemotaxis protein CheW compare
DDA3937_RS06305 -0.9 -4.5 N-acetylglucosamine-6-phosphate deacetylase compare
DDA3937_RS00915 -0.9 -3.0 HslU--HslV peptidase ATPase subunit compare
DDA3937_RS18405 -0.9 -4.2 threonine synthase compare
DDA3937_RS10485 -0.9 -5.7 anthranilate synthase component 1 compare
DDA3937_RS18660 -0.9 -6.7 phosphomannomutase/phosphoglucomutase compare
DDA3937_RS14695 -0.9 -4.3 enterochelin esterase compare
DDA3937_RS10555 -0.9 -2.0 electron transport complex subunit RsxG compare
DDA3937_RS12535 -0.9 -2.1 LapA family protein compare
DDA3937_RS06210 -0.9 -2.0 amino acid ABC transporter ATP-binding protein compare
DDA3937_RS09345 -0.9 -1.0 IS200/IS605 family transposase compare
DDA3937_RS14915 -0.9 -3.4 glycosyl hydrolase 53 family protein compare
DDA3937_RS22485 -0.9 -1.3 hypothetical protein compare
DDA3937_RS16755 -0.8 -4.2 transcriptional repressor MprA compare
DDA3937_RS06155 -0.8 -5.8 D-alanyl-D-alanine carboxypeptidase DacA compare
DDA3937_RS13530 -0.8 -4.4 protein-glutamate O-methyltransferase CheR compare
DDA3937_RS19700 -0.8 -2.9 EAL domain-containing protein compare
DDA3937_RS10725 -0.8 -1.8 acyltransferase family protein compare
DDA3937_RS08575 -0.8 -2.9 cyclic pyranopterin monophosphate synthase MoaC compare
DDA3937_RS17150 -0.8 -1.6 gamma-glutamylcyclotransferase compare
DDA3937_RS17545 -0.8 -2.5 aspartate/tyrosine/aromatic aminotransferase compare
DDA3937_RS02585 -0.8 -4.1 oligosaccharide flippase family protein compare
DDA3937_RS05635 -0.8 -3.9 trigger factor compare
DDA3937_RS16085 -0.8 -2.0 23S ribosomal RNA compare
DDA3937_RS14920 -0.8 -3.0 sugar ABC transporter permease compare
DDA3937_RS10470 -0.8 -3.9 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DDA3937_RS15150 -0.8 -4.4 polyphosphate kinase 1 compare
DDA3937_RS05050 -0.8 -2.4 transcriptional regulator GcvA compare
DDA3937_RS01745 -0.8 -4.0 ADP-ribose diphosphatase compare
DDA3937_RS00975 -0.8 -1.1 Si-specific NAD(P)(+) transhydrogenase compare
DDA3937_RS09195 -0.8 -2.2 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
DDA3937_RS04180 -0.8 -2.5 ogr/Delta-like zinc finger family protein compare
DDA3937_RS18970 -0.8 -4.4 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
DDA3937_RS08735 -0.8 -3.7 D-alanyl-D-alanine endopeptidase compare
DDA3937_RS00185 -0.8 -2.2 DNA-directed RNA polymerase subunit omega compare
DDA3937_RS00085 -0.8 -4.1 molybdenum cofactor guanylyltransferase MobA compare
DDA3937_RS11590 -0.8 -2.2 hypothetical protein compare
DDA3937_RS16105 -0.8 -3.0 polyphenol oxidase compare
DDA3937_RS18890 -0.8 -1.3 hypothetical protein compare
DDA3937_RS10960 -0.8 -4.1 Re/Si-specific NAD(P)(+) transhydrogenase subunit beta compare
DDA3937_RS10330 -0.8 -3.2 YchJ family protein compare
DDA3937_RS13135 -0.8 -3.1 phosphate acyltransferase PlsX compare
DDA3937_RS20085 -0.8 -2.7 exopolyphosphatase compare
DDA3937_RS14670 -0.8 -3.4 iron-enterobactin ABC transporter permease compare
DDA3937_RS03090 -0.7 -2.6 polyribonucleotide nucleotidyltransferase compare


Specific Phenotypes

None in this experiment

For Dickeya dadantii 3937 in plant experiments

For plant cv.Upstate across organisms