Experiment setATCH165 for Dickeya dadantii 3937

Compare to:

Upstate

200 most detrimental genes:

  gene name fitness t score description  
DDA3937_RS21960 +3.8 7.0 helix-turn-helix transcriptional regulator compare
DDA3937_RS15705 +3.0 16.4 cyclic-guanylate-specific phosphodiesterase compare
DDA3937_RS19360 +2.3 12.6 FKBP-type peptidyl-prolyl cis-trans isomerase compare
DDA3937_RS10980 +2.0 10.2 tetratricopeptide repeat-containing protein compare
DDA3937_RS13555 +1.9 12.8 flagellar motor stator protein MotA compare
DDA3937_RS07005 +1.9 2.1 type I addiction module toxin, SymE family compare
DDA3937_RS00845 +1.7 1.7 6-phosphofructokinase compare
DDA3937_RS18610 +1.6 5.9 RNA chaperone Hfq compare
DDA3937_RS04235 +1.5 5.0 phage holin family protein compare
DDA3937_RS00055 +1.4 10.9 ribose operon transcriptional repressor RbsR compare
DDA3937_RS15715 +1.3 2.5 holo-ACP synthase compare
DDA3937_RS12520 +1.3 2.4 stress response translation initiation inhibitor YciH compare
DDA3937_RS02685 +1.3 2.3 hypothetical protein compare
DDA3937_RS13550 +1.3 8.8 flagellar motor protein MotB compare
DDA3937_RS03095 +1.3 4.7 lipoprotein NlpI compare
DDA3937_RS08885 +1.2 1.7 hypothetical protein compare
DDA3937_RS01250 +1.2 1.5 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
DDA3937_RS10200 +1.2 1.2 YebY family protein compare
DDA3937_RS21990 +1.2 2.2 hypothetical protein compare
DDA3937_RS02160 +1.2 1.7 transketolase compare
DDA3937_RS10420 +1.1 1.9 YciI family protein compare
DDA3937_RS07175 +1.1 1.3 LysR family transcriptional regulator compare
DDA3937_RS13615 +1.1 2.2 phage holin family protein compare
DDA3937_RS20560 +1.1 2.5 L-Ala-D/L-Glu epimerase compare
DDA3937_RS14130 +1.1 1.6 TetR/AcrR family transcriptional regulator compare
DDA3937_RS00325 +1.1 2.3 DUF1471 domain-containing protein compare
DDA3937_RS03485 +1.1 2.1 hypothetical protein compare
DDA3937_RS22280 +1.1 1.1 GpE family phage tail protein compare
DDA3937_RS08855 +1.0 2.1 biotin carboxyl carrier domain-containing protein compare
DDA3937_RS18080 +1.0 2.2 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DDA3937_RS01065 +1.0 1.5 elongation factor Tu compare
DDA3937_RS11860 +1.0 2.3 oxidoreductase compare
DDA3937_RS04225 +1.0 4.5 DUF2586 domain-containing protein compare
DDA3937_RS07955 +0.9 1.0 LysR family transcriptional regulator compare
DDA3937_RS19930 +0.9 1.2 uroporphyrinogen-III C-methyltransferase compare
DDA3937_RS18960 +0.9 1.7 elongation factor P--(R)-beta-lysine ligase compare
DDA3937_RS10855 +0.9 2.0 hypothetical protein compare
DDA3937_RS23465 +0.9 2.2 hypothetical protein compare
DDA3937_RS22355 +0.9 1.2 mobilization protein mobC compare
DDA3937_RS02150 +0.9 1.8 AAA family ATPase compare
DDA3937_RS18190 +0.9 2.1 hypothetical protein compare
DDA3937_RS12030 +0.9 1.3 hypothetical protein compare
DDA3937_RS01945 +0.9 2.7 ribonuclease E inhibitor RraB compare
DDA3937_RS06215 +0.9 2.2 glutamate/aspartate ABC transporter permease GltK compare
DDA3937_RS10680 +0.8 3.9 ATP-dependent dethiobiotin synthetase BioD compare
DDA3937_RS04405 +0.8 3.5 GNAT family N-acetyltransferase compare
DDA3937_RS12620 +0.8 1.2 HTH-type transcriptional repressor PurR compare
DDA3937_RS16620 +0.8 1.9 methylthioribulose 1-phosphate dehydratase compare
DDA3937_RS13055 +0.8 2.4 thiamine kinase compare
DDA3937_RS04570 +0.8 1.1 FMN-binding protein compare
DDA3937_RS12225 +0.8 3.2 hypothetical protein compare
DDA3937_RS01915 +0.8 1.6 2-iminobutanoate/2-iminopropanoate deaminase compare
DDA3937_RS00630 +0.8 2.8 16S rRNA (guanine(966)-N(2))-methyltransferase compare
DDA3937_RS05320 +0.8 2.7 hypothetical protein compare
DDA3937_RS17645 +0.8 2.3 phage tail protein compare
DDA3937_RS19755 +0.8 1.7 cold-shock protein compare
DDA3937_RS04665 +0.8 3.0 helix-turn-helix transcriptional regulator compare
DDA3937_RS05335 +0.8 3.0 LysR family transcriptional regulator compare
DDA3937_RS17040 +0.8 2.4 2-dehydro-3-deoxyglucarate aldolase compare
DDA3937_RS04215 +0.8 1.9 phage tail protein compare
DDA3937_RS22515 +0.8 1.3 helix-turn-helix transcriptional regulator compare
DDA3937_RS13330 +0.7 6.7 methyltransferase regulatory domain-containing protein compare
DDA3937_RS19580 +0.7 5.8 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA compare
DDA3937_RS13560 +0.7 5.3 flagellar transcriptional regulator FlhC compare
DDA3937_RS18560 +0.7 1.8 glutathione synthase compare
DDA3937_RS02275 +0.7 1.6 Lrp/AsnC ligand binding domain-containing protein compare
DDA3937_RS07980 +0.7 2.0 ABC transporter permease subunit compare
DDA3937_RS02155 +0.7 4.2 DeoR/GlpR transcriptional regulator compare
DDA3937_RS04230 +0.7 3.1 DUF2597 family protein compare
DDA3937_RS01855 +0.7 1.3 aminoimidazole riboside kinase compare
DDA3937_RS12500 +0.7 2.1 carbon starvation protein A compare
DDA3937_RS10440 +0.7 1.5 UPF0259 family protein compare
DDA3937_RS11965 +0.7 3.9 carboxy terminal-processing peptidase compare
DDA3937_RS07965 +0.7 1.7 isopenicillin N synthase family oxygenase compare
DDA3937_RS08290 +0.7 1.9 VOC family protein compare
DDA3937_RS05770 +0.7 2.2 DUF454 family protein compare
DDA3937_RS17395 +0.7 2.0 FCD domain-containing protein compare
DDA3937_RS06420 +0.7 2.1 biotin-dependent carboxyltransferase family protein compare
DDA3937_RS09915 +0.7 1.5 winged helix-turn-helix transcriptional regulator compare
DDA3937_RS13945 +0.7 5.0 hypothetical protein compare
DDA3937_RS13325 +0.7 4.9 DegT/DnrJ/EryC1/StrS family aminotransferase compare
DDA3937_RS11185 +0.7 3.0 disulfide bond formation protein DsbB compare
DDA3937_RS15225 +0.7 1.0 YccF domain-containing protein compare
DDA3937_RS13780 +0.7 1.9 helix-turn-helix domain-containing protein compare
DDA3937_RS18905 +0.7 1.5 protein nifY compare
DDA3937_RS14530 +0.7 1.4 AzlD domain-containing protein compare
DDA3937_RS09980 +0.7 1.6 lipoprotein compare
DDA3937_RS00890 +0.7 3.4 glycerol kinase GlpK compare
DDA3937_RS12490 +0.6 5.0 exoribonuclease II compare
DDA3937_RS11465 +0.6 5.2 EAL domain-containing protein compare
DDA3937_RS14360 +0.6 0.8 sugar phosphatase compare
DDA3937_RS06415 +0.6 3.5 5-oxoprolinase subunit PxpB compare
DDA3937_RS18615 +0.6 0.9 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
DDA3937_RS21205 +0.6 1.3 Lrp/AsnC family transcriptional regulator compare
DDA3937_RS20820 +0.6 2.0 two-component system response regulator VfmH compare
DDA3937_RS00525 +0.6 3.0 cellulose synthase operon protein YhjQ compare
DDA3937_RS06360 +0.6 1.7 EamA family transporter compare
DDA3937_RS15905 +0.6 2.3 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD compare
DDA3937_RS11595 +0.6 1.5 type III secretion protein HrpF compare
DDA3937_RS13320 +0.6 5.0 ATP-grasp domain-containing protein compare
DDA3937_RS15155 +0.6 1.9 exopolyphosphatase compare
DDA3937_RS11655 +0.6 2.0 sigma-70 family RNA polymerase sigma factor compare
DDA3937_RS19000 +0.6 0.9 EF-P beta-lysylation protein EpmB compare
DDA3937_RS04555 +0.6 1.1 DNA-3-methyladenine glycosylase 2 family protein compare
DDA3937_RS02335 +0.6 2.2 hypothetical protein compare
DDA3937_RS17640 +0.6 1.9 phage tail protein compare
DDA3937_RS18755 +0.6 1.6 organic hydroperoxide resistance protein compare
DDA3937_RS23450 +0.6 1.7 CPBP family intramembrane metalloprotease compare
DDA3937_RS23340 +0.6 1.2 ilvB operon leader peptide IvbL compare
DDA3937_RS05245 +0.6 1.8 MarR family transcriptional regulator compare
DDA3937_RS03225 +0.6 3.3 LysR family transcriptional regulator compare
DDA3937_RS22310 +0.6 1.1 DUF2946 domain-containing protein compare
DDA3937_RS17770 +0.6 1.4 metal ABC transporter permease compare
DDA3937_RS19660 +0.6 4.5 4-alpha-glucanotransferase compare
DDA3937_RS00770 +0.5 3.6 hypothetical protein compare
DDA3937_RS13070 +0.5 2.3 purine nucleoside phosphoramidase compare
DDA3937_RS21110 +0.5 1.4 ABC transporter permease compare
DDA3937_RS08415 +0.5 1.1 IS3 family transposase compare
DDA3937_RS11090 +0.5 0.9 CesT family type III secretion system chaperone compare
DDA3937_RS12015 +0.5 1.1 DUF2732 family protein compare
DDA3937_RS14185 +0.5 2.2 glutamine amidotransferase compare
DDA3937_RS02050 +0.5 1.2 helix-turn-helix domain-containing protein compare
DDA3937_RS13565 +0.5 3.6 flagellar transcriptional regulator FlhD compare
DDA3937_RS10720 +0.5 1.9 hypothetical protein compare
DDA3937_RS00530 +0.5 3.9 UDP-forming cellulose synthase catalytic subunit compare
DDA3937_RS23400 +0.5 1.5 hypothetical protein compare
DDA3937_RS17415 +0.5 1.6 PTS lactose/cellobiose transporter subunit IIA compare
DDA3937_RS15700 +0.5 3.7 sensor domain-containing diguanylate cyclase compare
DDA3937_RS11585 +0.5 1.1 type III secretion system outer membrane ring subunit SctC compare
DDA3937_RS11775 +0.5 1.1 aminotransferase class IV compare
DDA3937_RS07235 +0.5 0.7 response regulator transcription factor compare
DDA3937_RS03935 +0.5 1.6 hypothetical protein compare
DDA3937_RS10045 +0.5 2.4 MAPEG family protein compare
DDA3937_RS11055 +0.5 1.4 sigma-70 family RNA polymerase sigma factor compare
DDA3937_RS05395 +0.5 1.7 pyrimidine/purine nucleoside phosphorylase compare
DDA3937_RS04810 +0.5 2.1 50S ribosome-binding GTPase compare
DDA3937_RS00540 +0.5 4.3 cellulose biosynthesis protein BcsC compare
DDA3937_RS12930 +0.5 3.2 L,D-transpeptidase compare
DDA3937_RS14960 +0.5 1.6 iron-containing alcohol dehydrogenase family protein compare
DDA3937_RS02790 +0.5 0.8 YqjK-like family protein compare
DDA3937_RS20755 +0.5 1.3 acyl carrier protein compare
DDA3937_RS16565 +0.5 1.7 hypothetical protein compare
DDA3937_RS18450 +0.5 1.7 trp operon repressor compare
DDA3937_RS00125 +0.5 0.6 nitrogen regulation protein NR(I) compare
DDA3937_RS00790 +0.5 1.8 hypothetical protein compare
DDA3937_RS18550 +0.5 3.4 deoxyribonuclease I compare
DDA3937_RS04680 +0.5 1.1 TIGR00645 family protein compare
DDA3937_RS06535 +0.5 0.7 tRNA-Lys compare
DDA3937_RS15135 +0.5 3.0 phosphate ABC transporter ATP-binding protein compare
DDA3937_RS23495 +0.5 0.9 hypothetical protein compare
DDA3937_RS15660 +0.5 3.2 membrane-bound lytic murein transglycosylase MltF compare
DDA3937_RS03260 +0.5 1.2 LysE family translocator compare
DDA3937_RS19115 +0.5 2.3 DUF494 domain-containing protein compare
DDA3937_RS01710 +0.5 3.5 penicillin-binding protein activator compare
DDA3937_RS00390 +0.5 1.5 DUF3748 domain-containing protein compare
DDA3937_RS01450 +0.5 3.7 ribonuclease G compare
DDA3937_RS17865 +0.5 1.2 YhcH/YjgK/YiaL family protein compare
DDA3937_RS06015 +0.5 1.8 HTH-type transcriptional regulator GalS compare
DDA3937_RS03355 +0.5 1.1 tRNA-Gly compare
DDA3937_RS22820 +0.5 2.1 transposase compare
DDA3937_RS23155 +0.5 0.8 hypothetical protein compare
DDA3937_RS07255 +0.5 1.3 hypothetical protein compare
DDA3937_RS01790 +0.5 2.8 cell division protein FtsP compare
DDA3937_RS06445 +0.5 2.7 succinate dehydrogenase membrane anchor subunit compare
DDA3937_RS04220 +0.5 2.2 hypothetical protein compare
DDA3937_RS16305 +0.5 1.6 ABC transporter substrate-binding protein compare
DDA3937_RS17670 +0.5 1.6 GPW/gp25 family protein compare
DDA3937_RS21445 +0.5 1.5 ABC transporter substrate-binding protein compare
DDA3937_RS19845 +0.5 1.7 threonine export protein RhtC compare
DDA3937_RS20835 +0.5 2.9 AraC family transcriptional regulator VfmE compare
DDA3937_RS00795 +0.5 0.7 phage tail protein compare
DDA3937_RS10590 +0.5 2.7 ribulokinase compare
DDA3937_RS23365 +0.5 1.0 hypothetical protein compare
DDA3937_RS02875 +0.5 3.4 MFS transporter compare
DDA3937_RS05340 +0.5 2.6 N-acetyltransferase compare
DDA3937_RS01290 +0.5 3.4 endonuclease compare
DDA3937_RS11565 +0.5 1.0 cupin domain-containing protein compare
DDA3937_RS06440 +0.5 2.7 succinate dehydrogenase cytochrome b556 subunit compare
DDA3937_RS16365 +0.5 2.1 two-component system response regulator BtsR compare
DDA3937_RS06135 +0.4 1.1 twin-arginine translocase subunit TatE compare
DDA3937_RS11680 +0.4 1.4 hypothetical protein compare
DDA3937_RS11970 +0.4 1.5 RNA chaperone ProQ compare
DDA3937_RS07015 +0.4 1.4 type VI secretion system contractile sheath small subunit compare
DDA3937_RS20255 +0.4 1.6 acetyl-CoA C-acyltransferase FadA compare
DDA3937_RS20495 +0.4 2.9 glycosyltransferase compare
DDA3937_RS23460 +0.4 0.8 hypothetical protein compare
DDA3937_RS10175 +0.4 2.0 DNA/RNA non-specific endonuclease compare
DDA3937_RS06635 +0.4 1.9 molybdate ABC transporter substrate-binding protein compare
DDA3937_RS21420 +0.4 1.5 4'-phosphopantetheinyl transferase compare
DDA3937_RS23095 +0.4 0.9 hypothetical protein compare
DDA3937_RS06840 +0.4 1.8 hypothetical protein compare
DDA3937_RS11885 +0.4 1.4 type II toxin-antitoxin system Phd/YefM family antitoxin compare
DDA3937_RS10145 +0.4 2.3 formate-dependent phosphoribosylglycinamide formyltransferase compare
DDA3937_RS10220 +0.4 2.1 ABC transporter substrate-binding protein compare
DDA3937_RS09255 +0.4 1.6 YeiH family putative sulfate export transporter compare
DDA3937_RS06815 +0.4 1.4 YjbF family lipoprotein compare
DDA3937_RS12290 +0.4 2.6 PAS domain-containing protein compare
DDA3937_RS02715 +0.4 2.0 anaerobic C4-dicarboxylate transporter compare
DDA3937_RS22360 +0.4 3.4 deoxyribonuclease compare
DDA3937_RS21380 +0.4 2.6 bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA compare


Specific Phenotypes

None in this experiment

For Dickeya dadantii 3937 in plant experiments

For plant cv.Upstate across organisms