Experiment setATCH164 for Dickeya dadantii 3937

Compare to:

Upstate

200 most important genes:

  gene name fitness t score description  
DDA3937_RS10140 -5.0 -3.5 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DDA3937_RS19615 -4.6 -6.2 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS10985 -4.4 -4.2 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS11335 -3.8 -8.0 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DDA3937_RS10950 -3.3 -7.6 fumarate/nitrate reduction transcriptional regulator Fnr compare
DDA3937_RS05150 -3.3 -6.6 sigma E protease regulator RseP compare
DDA3937_RS19510 -3.3 -4.1 peptidylprolyl isomerase A compare
DDA3937_RS00600 -3.0 -2.2 DcrB family lipoprotein compare
DDA3937_RS01820 -2.9 -3.7 tol-pal system-associated acyl-CoA thioesterase compare
DDA3937_RS03420 -2.9 -5.2 sugar transferase compare
DDA3937_RS15765 -2.9 -15.9 RNA polymerase sigma factor RpoE compare
DDA3937_RS14910 -2.8 -8.8 beta-galactosidase compare
DDA3937_RS00975 -2.7 -2.3 Si-specific NAD(P)(+) transhydrogenase compare
DDA3937_RS01600 -2.7 -10.8 outer membrane-stress sensor serine endopeptidase DegS compare
DDA3937_RS20455 -2.7 -4.0 putative lipopolysaccharide heptosyltransferase III compare
DDA3937_RS22035 -2.6 -3.0 immunity protein RhsIC compare
DDA3937_RS06615 -2.5 -15.1 UDP-glucose 4-epimerase GalE compare
DDA3937_RS18125 -2.5 -13.0 3-isopropylmalate dehydratase large subunit compare
DDA3937_RS18275 -2.5 -11.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
DDA3937_RS18130 -2.5 -5.0 3-isopropylmalate dehydratase small subunit compare
DDA3937_RS06075 -2.4 -4.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DDA3937_RS18120 -2.4 -9.6 3-isopropylmalate dehydrogenase compare
DDA3937_RS04960 -2.4 -3.2 thymidylate synthase compare
DDA3937_RS19015 -2.4 -10.6 glucose-6-phosphate isomerase compare
DDA3937_RS00580 -2.4 -12.0 2-dehydro-3-deoxygluconokinase compare
DDA3937_RS13515 -2.3 -11.7 protein phosphatase CheZ compare
DDA3937_RS14385 -2.3 -7.1 phosphate acetyltransferase compare
DDA3937_RS09655 -2.3 -15.2 formate C-acetyltransferase compare
DDA3937_RS19620 -2.2 -4.1 two-component system response regulator OmpR compare
DDA3937_RS00910 -2.1 -12.5 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
DDA3937_RS03285 -2.1 -2.2 protein YgfX compare
DDA3937_RS15420 -2.1 -7.0 IMP dehydrogenase compare
DDA3937_RS18690 -2.1 -6.5 glycosyltransferase compare
DDA3937_RS06025 -2.1 -8.0 phosphoribosylformylglycinamidine cyclo-ligase compare
DDA3937_RS06610 -2.1 -8.4 galactose-1-phosphate uridylyltransferase compare
DDA3937_RS01740 -2.1 -4.9 outer membrane channel protein TolC compare
DDA3937_RS04125 -2.1 -4.7 acetyltransferase compare
DDA3937_RS00135 -2.1 -1.7 glutamate--ammonia ligase compare
DDA3937_RS12010 -2.0 -2.2 hypothetical protein compare
DDA3937_RS18480 -2.0 -3.7 phosphoglycerate dehydrogenase compare
DDA3937_RS03300 -2.0 -1.8 site-specific tyrosine recombinase XerD compare
DDA3937_RS17835 -1.9 -7.4 D-threonate 4-phosphate dehydrogenase compare
DDA3937_RS10325 -1.9 -7.7 formyltetrahydrofolate deformylase compare
DDA3937_RS14475 -1.9 -6.0 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS09650 -1.9 -8.5 pyruvate formate lyase 1-activating protein compare
DDA3937_RS15655 -1.9 -12.8 phosphoribosylformylglycinamidine synthase compare
DDA3937_RS09235 -1.8 -3.0 1-phosphofructokinase compare
DDA3937_RS17160 -1.8 -9.7 outer membrane protein assembly factor compare
DDA3937_RS14695 -1.8 -6.7 enterochelin esterase compare
DDA3937_RS06295 -1.8 -9.1 asparagine synthase B compare
DDA3937_RS21310 -1.8 -3.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DDA3937_RS06605 -1.7 -7.3 galactokinase compare
DDA3937_RS20415 -1.7 -3.5 rhodanese-like domain-containing protein compare
DDA3937_RS04140 -1.7 -1.7 hypothetical protein compare
DDA3937_RS14630 -1.7 -3.5 tRNA-Arg compare
DDA3937_RS17830 -1.7 -2.2 DeoR/GlpR transcriptional regulator compare
DDA3937_RS01550 -1.7 -6.0 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DDA3937_RS16065 -1.7 -3.5 murein transglycosylase D compare
DDA3937_RS14435 -1.7 -13.0 amidophosphoribosyltransferase compare
DDA3937_RS19880 -1.7 -5.9 DNA helicase II compare
DDA3937_RS16935 -1.7 -2.6 phosphoadenylyl-sulfate reductase compare
DDA3937_RS18405 -1.6 -9.3 threonine synthase compare
DDA3937_RS13345 -1.6 -6.7 flagellar filament capping protein FliD compare
DDA3937_RS02425 -1.6 -3.6 phosphoserine phosphatase compare
DDA3937_RS09590 -1.6 -4.0 leucine-responsive transcriptional regulator Lrp compare
DDA3937_RS22485 -1.6 -2.5 hypothetical protein compare
DDA3937_RS10465 -1.6 -7.5 tryptophan synthase subunit beta compare
DDA3937_RS17250 -1.5 -2.0 hypothetical protein compare
DDA3937_RS14675 -1.5 -2.8 ABC transporter ATP-binding protein compare
DDA3937_RS09585 -1.5 -1.8 thioredoxin-disulfide reductase compare
DDA3937_RS02915 -1.5 -5.0 TetR/AcrR family transcriptional regulator compare
DDA3937_RS00560 -1.5 -6.7 insulinase family protein compare
DDA3937_RS12855 -1.5 -4.3 quinone-dependent dihydroorotate dehydrogenase compare
DDA3937_RS13525 -1.5 -7.4 chemotaxis response regulator protein-glutamate methylesterase compare
DDA3937_RS05645 -1.5 -9.6 ATP-dependent protease ATP-binding subunit ClpX compare
DDA3937_RS09670 -1.4 -6.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
DDA3937_RS00140 -1.4 -6.4 ribosome-dependent GTPase TypA compare
DDA3937_RS13170 -1.4 -3.9 dihydroorotase compare
DDA3937_RS18310 -1.4 -7.7 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DDA3937_RS07750 -1.4 -2.6 iron-siderophore ABC transporter substrate-binding protein compare
DDA3937_RS05640 -1.4 -6.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
DDA3937_RS08565 -1.4 -2.2 GTP 3',8-cyclase MoaA compare
DDA3937_RS15815 -1.4 -1.3 tRNA-Val compare
DDA3937_RS20475 -1.4 -1.3 glycosyltransferase family 4 protein compare
DDA3937_RS13110 -1.4 -4.7 beta-ketoacyl-ACP synthase II compare
DDA3937_RS01000 -1.4 -3.0 glutamate racemase compare
DDA3937_RS14380 -1.3 -2.6 acetate kinase compare
DDA3937_RS18585 -1.3 -1.3 adenylosuccinate synthase compare
DDA3937_RS02210 -1.3 -6.3 type-1Ba cytolytic delta-endotoxin compare
DDA3937_RS16555 -1.3 -5.8 esterase FrsA compare
DDA3937_RS01925 -1.3 -7.5 aspartate carbamoyltransferase compare
DDA3937_RS05635 -1.3 -6.0 trigger factor compare
DDA3937_RS14670 -1.3 -5.0 iron-enterobactin ABC transporter permease compare
DDA3937_RS01530 -1.3 -3.4 RNA polymerase factor sigma-54 compare
DDA3937_RS12610 -1.3 -3.6 Grx4 family monothiol glutaredoxin compare
DDA3937_RS17015 -1.3 -10.8 GTP diphosphokinase compare
DDA3937_RS18655 -1.3 -7.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
DDA3937_RS00645 -1.3 -4.1 cell division protein FtsX compare
DDA3937_RS08400 -1.3 -1.5 H-NS histone family protein compare
DDA3937_RS00835 -1.3 -1.5 2TM domain-containing protein compare
DDA3937_RS13220 -1.3 -2.7 glucan biosynthesis protein G compare
DDA3937_RS18670 -1.3 -2.9 ABC transporter permease compare
DDA3937_RS08470 -1.2 -6.0 molybdopterin-synthase adenylyltransferase MoeB compare
DDA3937_RS17155 -1.2 -5.7 translocation/assembly module TamB compare
DDA3937_RS18305 -1.2 -6.8 carbamoyl-phosphate synthase large subunit compare
DDA3937_RS13205 -1.2 -4.1 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
DDA3937_RS01215 -1.2 -5.0 phosphoribosylamine--glycine ligase compare
DDA3937_RS00125 -1.2 -2.1 nitrogen regulation protein NR(I) compare
DDA3937_RS13350 -1.2 -3.4 flagellar export chaperone FliS compare
DDA3937_RS02835 -1.2 -5.6 altronate dehydratase compare
DDA3937_RS12525 -1.2 -3.6 orotidine-5'-phosphate decarboxylase compare
DDA3937_RS10460 -1.2 -5.0 tryptophan synthase subunit alpha compare
DDA3937_RS00915 -1.2 -4.4 HslU--HslV peptidase ATPase subunit compare
DDA3937_RS20885 -1.2 -1.6 MarR family transcriptional regulator compare
DDA3937_RS08585 -1.2 -2.5 molybdopterin synthase catalytic subunit MoaE compare
DDA3937_RS21070 -1.2 -2.8 DNA-3-methyladenine glycosylase I compare
DDA3937_RS18600 -1.2 -1.3 FtsH protease activity modulator HflK compare
DDA3937_RS18680 -1.2 -3.2 GDP-L-fucose synthase compare
DDA3937_RS10725 -1.2 -2.1 acyltransferase family protein compare
DDA3937_RS20535 -1.2 -5.4 orotate phosphoribosyltransferase compare
DDA3937_RS12280 -1.2 -1.1 YnbE family lipoprotein compare
DDA3937_RS14230 -1.1 -2.7 hydrogenase-2 assembly chaperone compare
DDA3937_RS01870 -1.1 -3.5 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
DDA3937_RS01455 -1.1 -5.8 AsmA2 domain-containing protein YhdP compare
DDA3937_RS22175 -1.1 -1.8 IS3 family transposase compare
DDA3937_RS18115 -1.1 -4.9 2-isopropylmalate synthase compare
DDA3937_RS14205 -1.1 -4.7 hydrogenase expression/formation protein HypE compare
DDA3937_RS03990 -1.1 -1.8 CopG family transcriptional regulator compare
DDA3937_RS06765 -1.1 -2.1 DUF616 domain-containing protein compare
DDA3937_RS01220 -1.1 -6.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DDA3937_RS13060 -1.1 -2.0 penicillin-binding protein activator LpoB compare
DDA3937_RS23305 -1.1 -1.5 hypothetical protein compare
DDA3937_RS00100 -1.1 -6.7 thiol:disulfide interchange protein DsbA compare
DDA3937_RS14700 -1.1 -7.4 TonB-dependent siderophore receptor compare
DDA3937_RS20545 -1.1 -2.1 DUF202 domain-containing protein compare
DDA3937_RS06685 -1.1 -2.4 iron-sulfur cluster carrier protein ApbC compare
DDA3937_RS00900 -1.1 -3.2 cell division protein ZapB compare
DDA3937_RS18410 -1.1 -4.4 homoserine kinase compare
DDA3937_RS14440 -1.1 -6.2 colicin V production protein compare
DDA3937_RS06235 -1.1 -3.8 CNNM family magnesium/cobalt transport protein CorC compare
DDA3937_RS10580 -1.1 -1.7 transcription modulator YdgT compare
DDA3937_RS18425 -1.0 -5.4 two-component system response regulator ArcA compare
DDA3937_RS06350 -1.0 -2.5 replication initiation negative regulator SeqA compare
DDA3937_RS21095 -1.0 -0.9 DUF1471 domain-containing protein compare
DDA3937_RS05755 -1.0 -2.4 pleiotropic regulatory protein RsmS compare
DDA3937_RS19645 -1.0 -2.1 pimeloyl-ACP methyl ester esterase BioH compare
DDA3937_RS22235 -1.0 -3.2 immunity 8 family protein compare
DDA3937_RS01810 -1.0 -4.6 DedA family protein compare
DDA3937_RS04945 -1.0 -4.4 RNA pyrophosphohydrolase compare
DDA3937_RS18660 -1.0 -7.1 phosphomannomutase/phosphoglucomutase compare
DDA3937_RS00920 -1.0 -2.6 ATP-dependent protease subunit HslV compare
DDA3937_RS10485 -1.0 -5.8 anthranilate synthase component 1 compare
DDA3937_RS08575 -1.0 -3.3 cyclic pyranopterin monophosphate synthase MoaC compare
DDA3937_RS10130 -1.0 -5.0 MurR/RpiR family transcriptional regulator compare
DDA3937_RS04895 -1.0 -2.2 oxidative damage protection protein compare
DDA3937_RS05160 -1.0 -1.2 molecular chaperone Skp compare
DDA3937_RS18415 -1.0 -5.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
DDA3937_RS14665 -1.0 -3.4 Fe(3+)-siderophore ABC transporter permease compare
DDA3937_RS15750 -1.0 -1.8 SoxR-reducing system protein RseC compare
DDA3937_RS16110 -1.0 -6.7 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DDA3937_RS09550 -1.0 -1.6 cold shock-like protein CspD compare
DDA3937_RS20465 -0.9 -4.0 O-antigen ligase family protein compare
DDA3937_RS05050 -0.9 -2.9 transcriptional regulator GcvA compare
DDA3937_RS11180 -0.9 -2.7 fatty acid metabolism transcriptional regulator FadR compare
DDA3937_RS16650 -0.9 -1.4 amino acid ABC transporter permease compare
DDA3937_RS02585 -0.9 -3.2 oligosaccharide flippase family protein compare
DDA3937_RS01250 -0.9 -0.9 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
DDA3937_RS11715 -0.9 -1.3 hypothetical protein compare
DDA3937_RS09770 -0.9 -1.4 fumarylacetoacetate hydrolase family protein compare
DDA3937_RS20085 -0.9 -3.4 exopolyphosphatase compare
DDA3937_RS19915 -0.9 -0.7 class I adenylate cyclase compare
DDA3937_RS06745 -0.9 -3.7 dTDP-4-dehydrorhamnose 3,5-epimerase compare
DDA3937_RS15650 -0.9 -5.1 HAMP domain-containing histidine kinase compare
DDA3937_RS13215 -0.9 -2.8 glucans biosynthesis glucosyltransferase MdoH compare
DDA3937_RS08425 -0.9 -1.1 tRNA-Asn compare
DDA3937_RS15110 -0.9 -2.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
DDA3937_RS05105 -0.9 -2.0 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
DDA3937_RS00640 -0.9 -1.4 cell division ATP-binding protein FtsE compare
DDA3937_RS10275 -0.9 -4.3 DUF1315 family protein compare
DDA3937_RS18180 -0.9 -1.9 DedA family protein compare
DDA3937_RS11490 -0.9 -3.4 high frequency lysogenization protein HflD compare
DDA3937_RS15720 -0.9 -3.4 pyridoxine 5'-phosphate synthase compare
DDA3937_RS21605 -0.9 -3.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
DDA3937_RS13135 -0.9 -4.1 phosphate acyltransferase PlsX compare
DDA3937_RS04915 -0.9 -2.1 DUF2884 domain-containing protein compare
DDA3937_RS17985 -0.9 -4.5 cell division protein ZapD compare
DDA3937_RS11275 -0.9 -4.4 TerC family protein compare
DDA3937_RS06155 -0.9 -5.8 D-alanyl-D-alanine carboxypeptidase DacA compare
DDA3937_RS10755 -0.9 -2.4 paraquat-inducible protein A compare
DDA3937_RS20650 -0.9 -2.4 helix-turn-helix transcriptional regulator compare
DDA3937_RS18965 -0.9 -4.2 fumarate reductase (quinol) flavoprotein subunit compare
DDA3937_RS04480 -0.9 -3.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DDA3937_RS14655 -0.9 -4.1 Fe2+-enterobactin ABC transporter substrate-binding protein compare
DDA3937_RS15225 -0.9 -2.8 YccF domain-containing protein compare
DDA3937_RS12590 -0.9 -3.6 glycine zipper 2TM domain-containing protein compare
DDA3937_RS09195 -0.9 -2.3 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
DDA3937_RS23235 -0.9 -2.1 hypothetical protein compare
DDA3937_RS15910 -0.9 -1.1 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
DDA3937_RS11330 -0.9 -4.0 5-dehydro-4-deoxy-D-glucuronate isomerase compare
DDA3937_RS18970 -0.9 -4.7 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare


Specific Phenotypes

None in this experiment

For Dickeya dadantii 3937 in plant experiments

For plant cv.Upstate across organisms