Experiment setATCH164 for Dickeya dadantii 3937

Compare to:

Upstate

200 most detrimental genes:

  gene name fitness t score description  
DDA3937_RS21960 +4.3 7.4 helix-turn-helix transcriptional regulator compare
DDA3937_RS15705 +2.1 12.2 cyclic-guanylate-specific phosphodiesterase compare
DDA3937_RS20110 +2.0 3.3 peptidylprolyl isomerase compare
DDA3937_RS02230 +1.9 2.0 ABC transporter permease compare
DDA3937_RS16490 +1.9 2.5 hypothetical protein compare
DDA3937_RS23495 +1.7 2.8 hypothetical protein compare
DDA3937_RS07980 +1.7 2.2 ABC transporter permease subunit compare
DDA3937_RS13565 +1.7 9.1 flagellar transcriptional regulator FlhD compare
DDA3937_RS03485 +1.7 3.2 hypothetical protein compare
DDA3937_RS18960 +1.6 1.8 elongation factor P--(R)-beta-lysine ligase compare
DDA3937_RS19360 +1.6 9.1 FKBP-type peptidyl-prolyl cis-trans isomerase compare
DDA3937_RS12620 +1.6 1.6 HTH-type transcriptional repressor PurR compare
DDA3937_RS10690 +1.6 2.9 DUF1283 family protein compare
DDA3937_RS22450 +1.6 1.8 NAD-dependent dehydratase compare
DDA3937_RS19755 +1.5 3.3 cold-shock protein compare
DDA3937_RS12095 +1.4 1.5 recombinase family protein compare
DDA3937_RS02155 +1.4 6.0 DeoR/GlpR transcriptional regulator compare
DDA3937_RS01065 +1.4 1.7 elongation factor Tu compare
DDA3937_RS10980 +1.3 7.4 tetratricopeptide repeat-containing protein compare
DDA3937_RS00055 +1.3 9.4 ribose operon transcriptional repressor RbsR compare
DDA3937_RS13560 +1.3 7.7 flagellar transcriptional regulator FlhC compare
DDA3937_RS00290 +1.2 2.0 DUF1471 domain-containing protein compare
DDA3937_RS07575 +1.2 1.2 hypothetical protein compare
DDA3937_RS02685 +1.2 2.1 hypothetical protein compare
DDA3937_RS04235 +1.2 4.8 phage holin family protein compare
DDA3937_RS18010 +1.2 1.7 DUF721 domain-containing protein compare
DDA3937_RS06360 +1.2 1.8 EamA family transporter compare
DDA3937_RS21990 +1.1 1.5 hypothetical protein compare
DDA3937_RS22250 +1.1 1.6 DUF2627 domain-containing protein compare
DDA3937_RS23045 +1.1 0.9 stress response protein AzuC compare
DDA3937_RS13615 +1.1 2.2 phage holin family protein compare
DDA3937_RS10855 +1.1 1.8 hypothetical protein compare
DDA3937_RS18610 +1.1 3.1 RNA chaperone Hfq compare
DDA3937_RS01700 +1.0 4.5 DnaA initiator-associating protein DiaA compare
DDA3937_RS04225 +1.0 3.7 DUF2586 domain-containing protein compare
DDA3937_RS04230 +1.0 3.5 DUF2597 family protein compare
DDA3937_RS10420 +1.0 1.6 YciI family protein compare
DDA3937_RS02275 +1.0 1.7 Lrp/AsnC ligand binding domain-containing protein compare
DDA3937_RS02665 +1.0 2.5 type II toxin-antitoxin system toxin CcdB compare
DDA3937_RS09520 +1.0 2.1 heavy metal-binding domain-containing protein compare
DDA3937_RS07335 +1.0 1.2 DUF1971 domain-containing protein compare
DDA3937_RS18615 +1.0 1.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
DDA3937_RS16415 +1.0 3.8 NAD(P)H-dependent oxidoreductase compare
DDA3937_RS03450 +1.0 2.3 TOBE domain-containing protein compare
DDA3937_RS18790 +0.9 2.5 IS110-like element ISEch3 family transposase compare
DDA3937_RS18095 +0.9 2.4 catabolite repressor/activator compare
DDA3937_RS01710 +0.9 5.9 penicillin-binding protein activator compare
DDA3937_RS20815 +0.9 7.0 two-component system sensor histidine kinase VfmI compare
DDA3937_RS18145 +0.9 2.3 hypothetical protein compare
DDA3937_RS12015 +0.9 1.7 DUF2732 family protein compare
DDA3937_RS17395 +0.9 2.4 FCD domain-containing protein compare
DDA3937_RS20755 +0.9 1.1 acyl carrier protein compare
DDA3937_RS22530 +0.9 1.3 ilv operon leader peptide compare
DDA3937_RS00410 +0.9 2.3 exo-alpha-sialidase compare
DDA3937_RS09580 +0.9 1.6 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
DDA3937_RS11465 +0.9 6.1 EAL domain-containing protein compare
DDA3937_RS18905 +0.9 1.4 protein nifY compare
DDA3937_RS19580 +0.9 6.7 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA compare
DDA3937_RS18190 +0.9 2.6 hypothetical protein compare
DDA3937_RS05395 +0.9 1.5 pyrimidine/purine nucleoside phosphorylase compare
DDA3937_RS07225 +0.9 1.9 CidB/LrgB family autolysis modulator compare
DDA3937_RS05305 +0.9 2.6 alkylphosphonate utilization protein compare
DDA3937_RS13970 +0.8 1.5 type II toxin-antitoxin system CcdA family antitoxin compare
DDA3937_RS01680 +0.8 3.0 isoprenoid biosynthesis glyoxalase ElbB compare
DDA3937_RS10680 +0.8 4.1 ATP-dependent dethiobiotin synthetase BioD compare
DDA3937_RS20265 +0.8 0.9 YeeE/YedE family protein compare
DDA3937_RS07795 +0.8 0.9 GNAT family N-acetyltransferase compare
DDA3937_RS22435 +0.8 1.8 AlpA family transcriptional regulator compare
DDA3937_RS12500 +0.8 1.1 carbon starvation protein A compare
DDA3937_RS18330 +0.8 1.7 FKBP-type peptidyl-prolyl cis-trans isomerase compare
DDA3937_RS16795 +0.8 1.0 YfiM family lipoprotein compare
DDA3937_RS10590 +0.8 3.5 ribulokinase compare
DDA3937_RS04665 +0.8 4.5 helix-turn-helix transcriptional regulator compare
DDA3937_RS00590 +0.8 2.8 inner membrane protein YhjD compare
DDA3937_RS17615 +0.8 2.0 flavin reductase family protein compare
DDA3937_RS20830 +0.8 4.1 ABC transporter ATP-binding protein compare
DDA3937_RS14880 +0.8 1.8 pirin family protein compare
DDA3937_RS13940 +0.8 2.3 hypothetical protein compare
DDA3937_RS02480 +0.7 1.8 flagellar protein FlhE compare
DDA3937_RS20255 +0.7 2.1 acetyl-CoA C-acyltransferase FadA compare
DDA3937_RS07635 +0.7 2.0 ribose 1,5-bisphosphokinase compare
DDA3937_RS20835 +0.7 5.5 AraC family transcriptional regulator VfmE compare
DDA3937_RS04965 +0.7 1.8 prepilin peptidase-dependent protein compare
DDA3937_RS11515 +0.7 4.6 peptidase T compare
DDA3937_RS10835 +0.7 2.1 SDR family oxidoreductase compare
DDA3937_RS15660 +0.7 5.3 membrane-bound lytic murein transglycosylase MltF compare
DDA3937_RS04405 +0.7 3.3 GNAT family N-acetyltransferase compare
DDA3937_RS19005 +0.7 1.1 DUF4156 domain-containing protein compare
DDA3937_RS23155 +0.7 1.7 hypothetical protein compare
DDA3937_RS01450 +0.7 5.6 ribonuclease G compare
DDA3937_RS20655 +0.7 2.2 helix-turn-helix domain-containing protein compare
DDA3937_RS03680 +0.7 1.2 DNA gyrase inhibitor SbmC compare
DDA3937_RS01945 +0.7 2.1 ribonuclease E inhibitor RraB compare
DDA3937_RS10200 +0.7 1.1 YebY family protein compare
DDA3937_RS22950 +0.7 1.7 hypothetical protein compare
DDA3937_RS09025 +0.7 1.7 DUF4224 domain-containing protein compare
DDA3937_RS22515 +0.7 1.0 helix-turn-helix transcriptional regulator compare
DDA3937_RS12490 +0.7 5.0 exoribonuclease II compare
DDA3937_RS05920 +0.7 2.1 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase compare
DDA3937_RS01390 +0.7 0.6 YhdT family protein compare
DDA3937_RS12450 +0.7 1.8 peptide ABC transporter permease SapC compare
DDA3937_RS19400 +0.7 0.9 YheV family putative metal-binding protein compare
DDA3937_RS05710 +0.7 2.5 YbaY family lipoprotein compare
DDA3937_RS09505 +0.7 2.4 arginine ABC transporter permease ArtQ compare
DDA3937_RS13790 +0.7 1.8 helix-turn-helix transcriptional regulator compare
DDA3937_RS22310 +0.7 1.1 DUF2946 domain-containing protein compare
DDA3937_RS07340 +0.7 1.4 DUF1869 domain-containing protein compare
DDA3937_RS00845 +0.7 1.1 6-phosphofructokinase compare
DDA3937_RS00770 +0.7 4.0 hypothetical protein compare
DDA3937_RS14265 +0.7 2.7 PhzF family phenazine biosynthesis protein compare
DDA3937_RS17645 +0.7 1.6 phage tail protein compare
DDA3937_RS05320 +0.7 2.9 hypothetical protein compare
DDA3937_RS06990 +0.7 1.9 RHS domain-containing protein compare
DDA3937_RS02105 +0.7 1.3 bacilysin biosynthesis protein BacA compare
DDA3937_RS15375 +0.7 3.2 DUF3750 domain-containing protein compare
DDA3937_RS10695 +0.7 2.2 bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG compare
DDA3937_RS04220 +0.7 2.9 hypothetical protein compare
DDA3937_RS00425 +0.7 2.5 YceK/YidQ family lipoprotein compare
DDA3937_RS13180 +0.7 2.2 biofilm formation regulator BssS compare
DDA3937_RS13070 +0.7 3.1 purine nucleoside phosphoramidase compare
DDA3937_RS12685 +0.6 2.2 type II secretion system major pseudopilin GspG compare
DDA3937_RS11750 +0.6 1.7 transporter substrate-binding domain-containing protein compare
DDA3937_RS12930 +0.6 3.3 L,D-transpeptidase compare
DDA3937_RS19440 +0.6 1.1 OsmC family protein compare
DDA3937_RS07410 +0.6 1.8 4Fe-4S dicluster domain-containing protein compare
DDA3937_RS06670 +0.6 1.9 VirK family protein compare
DDA3937_RS10270 +0.6 2.3 peptide-methionine (R)-S-oxide reductase MsrB compare
DDA3937_RS11975 +0.6 1.4 GAF domain-containing protein compare
DDA3937_RS01675 +0.6 4.0 aerobic respiration two-component sensor histidine kinase ArcB compare
DDA3937_RS23345 +0.6 2.0 hypothetical protein compare
DDA3937_RS04820 +0.6 1.0 integrase compare
DDA3937_RS15135 +0.6 3.8 phosphate ABC transporter ATP-binding protein compare
DDA3937_RS03020 +0.6 0.8 ribosome assembly RNA-binding protein YhbY compare
DDA3937_RS14610 +0.6 1.1 YfcZ/YiiS family protein compare
DDA3937_RS14190 +0.6 1.8 hypothetical protein compare
DDA3937_RS02870 +0.6 4.3 signal transduction histidine-protein kinase/phosphatase UhpB compare
DDA3937_RS12680 +0.6 1.3 type II secretion system protein compare
DDA3937_RS12170 +0.6 1.3 hypothetical protein compare
DDA3937_RS23170 +0.6 1.7 YciY family protein compare
DDA3937_RS08865 +0.6 2.8 allophanate hydrolase subunit 1 compare
DDA3937_RS10360 +0.6 4.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
DDA3937_RS21380 +0.6 3.2 bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA compare
DDA3937_RS15745 +0.6 1.6 elongation factor 4 compare
DDA3937_RS18830 +0.6 1.7 nitrogen fixation protein NifM compare
DDA3937_RS10060 +0.6 1.0 dihydroneopterin triphosphate diphosphatase compare
DDA3937_RS07660 +0.6 2.3 phosphonate ABC transporter substrate-binding protein compare
DDA3937_RS08810 +0.6 2.0 glutamine ABC transporter substrate-binding protein GlnH compare
DDA3937_RS06085 +0.6 1.8 tRNA(Met) cytidine acetyltransferase compare
DDA3937_RS05315 +0.6 1.8 DUF1987 domain-containing protein compare
DDA3937_RS06840 +0.6 2.5 hypothetical protein compare
DDA3937_RS05835 +0.6 2.3 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK compare
DDA3937_RS03095 +0.6 2.8 lipoprotein NlpI compare
DDA3937_RS07720 +0.6 3.7 IucA/IucC family siderophore biosynthesis protein compare
DDA3937_RS20770 +0.6 1.5 VOC family protein compare
DDA3937_RS20820 +0.6 3.4 two-component system response regulator VfmH compare
DDA3937_RS16615 +0.6 1.4 acireductone synthase compare
DDA3937_RS00890 +0.6 2.6 glycerol kinase GlpK compare
DDA3937_RS02875 +0.6 4.4 MFS transporter compare
DDA3937_RS17115 +0.6 2.3 SH3 domain-containing protein compare
DDA3937_RS02880 +0.5 3.2 hexose-6-phosphate:phosphate antiporter compare
DDA3937_RS07135 +0.5 0.9 DUF1272 domain-containing protein compare
DDA3937_RS00895 +0.5 3.5 aquaporin compare
DDA3937_RS08605 +0.5 1.7 Bax inhibitor-1/YccA family protein compare
DDA3937_RS12085 +0.5 1.8 DNA endonuclease SmrA compare
DDA3937_RS11185 +0.5 2.1 disulfide bond formation protein DsbB compare
DDA3937_RS13370 +0.5 3.6 flagellar motor switch protein FliG compare
DDA3937_RS10440 +0.5 0.9 UPF0259 family protein compare
DDA3937_RS14185 +0.5 1.6 glutamine amidotransferase compare
DDA3937_RS23320 +0.5 1.7 hypothetical protein compare
DDA3937_RS04555 +0.5 0.9 DNA-3-methyladenine glycosylase 2 family protein compare
DDA3937_RS08745 +0.5 0.8 DeoR/GlpR transcriptional regulator compare
DDA3937_RS04715 +0.5 1.6 response regulator transcription factor compare
DDA3937_RS13485 +0.5 2.8 flagellar basal body P-ring formation protein FlgA compare
DDA3937_RS23340 +0.5 0.7 ilvB operon leader peptide IvbL compare
DDA3937_RS06865 +0.5 1.8 hemin ABC transporter substrate-binding protein compare
DDA3937_RS22980 +0.5 1.1 IS3 family transposase compare
DDA3937_RS16475 +0.5 1.2 hypothetical protein compare
DDA3937_RS06600 +0.5 3.0 galactose-1-epimerase compare
DDA3937_RS00695 +0.5 1.4 hypothetical protein compare
DDA3937_RS03560 +0.5 1.5 HlyD family secretion protein compare
DDA3937_RS09720 +0.5 1.1 imidazole glycerol phosphate synthase subunit HisH compare
DDA3937_RS16300 +0.5 1.1 hypothetical protein compare
DDA3937_RS03235 +0.5 3.0 acetolactate synthase AlsS compare
DDA3937_RS01835 +0.5 1.3 LacI family DNA-binding transcriptional regulator compare
DDA3937_RS02185 +0.5 2.2 sugar ABC transporter ATP-binding protein compare
DDA3937_RS04215 +0.5 1.6 phage tail protein compare
DDA3937_RS08925 +0.5 2.2 GlpM family protein compare
DDA3937_RS07650 +0.5 1.5 LysR family transcriptional regulator compare
DDA3937_RS14080 +0.5 1.5 uroporphyrinogen-III C-methyltransferase compare
DDA3937_RS19115 +0.5 2.5 DUF494 domain-containing protein compare
DDA3937_RS05630 +0.5 2.1 transcriptional regulator BolA compare
DDA3937_RS08260 +0.5 1.9 amino acid ABC transporter ATP-binding protein compare
DDA3937_RS12495 +0.5 1.1 aldo/keto reductase compare
DDA3937_RS09210 +0.5 2.5 elongation factor P-like protein YeiP compare
DDA3937_RS21270 +0.5 1.2 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ compare
DDA3937_RS14410 +0.5 1.8 histidine ABC transporter ATP-binding protein HisP compare
DDA3937_RS10585 +0.5 3.0 L-arabinose isomerase compare
DDA3937_RS05260 +0.5 1.4 YbhB/YbcL family Raf kinase inhibitor-like protein compare
DDA3937_RS18925 +0.5 2.5 nitrogenase iron protein compare
DDA3937_RS06270 +0.5 0.8 tRNA-Met compare


Specific Phenotypes

None in this experiment

For Dickeya dadantii 3937 in plant experiments

For plant cv.Upstate across organisms