Experiment setATCH163 for Dickeya dadantii 3937

Compare to:

Upstate

200 most important genes:

  gene name fitness t score description  
DDA3937_RS19615 -3.8 -4.5 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS15765 -3.4 -19.2 RNA polymerase sigma factor RpoE compare
DDA3937_RS00600 -3.4 -1.6 DcrB family lipoprotein compare
DDA3937_RS19510 -3.0 -1.9 peptidylprolyl isomerase A compare
DDA3937_RS10140 -3.0 -6.4 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DDA3937_RS15420 -3.0 -6.3 IMP dehydrogenase compare
DDA3937_RS01600 -2.9 -12.0 outer membrane-stress sensor serine endopeptidase DegS compare
DDA3937_RS06025 -2.9 -9.0 phosphoribosylformylglycinamidine cyclo-ligase compare
DDA3937_RS00640 -2.9 -2.4 cell division ATP-binding protein FtsE compare
DDA3937_RS14910 -2.8 -11.7 beta-galactosidase compare
DDA3937_RS18130 -2.8 -4.3 3-isopropylmalate dehydratase small subunit compare
DDA3937_RS11335 -2.7 -7.0 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DDA3937_RS10985 -2.7 -3.6 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS10435 -2.6 -2.2 septation protein A compare
DDA3937_RS06615 -2.5 -14.9 UDP-glucose 4-epimerase GalE compare
DDA3937_RS05150 -2.5 -6.0 sigma E protease regulator RseP compare
DDA3937_RS16935 -2.4 -3.2 phosphoadenylyl-sulfate reductase compare
DDA3937_RS18275 -2.4 -9.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
DDA3937_RS17250 -2.3 -1.9 hypothetical protein compare
DDA3937_RS01820 -2.2 -3.0 tol-pal system-associated acyl-CoA thioesterase compare
DDA3937_RS01740 -2.2 -4.2 outer membrane channel protein TolC compare
DDA3937_RS14380 -2.2 -3.9 acetate kinase compare
DDA3937_RS04125 -2.2 -4.9 acetyltransferase compare
DDA3937_RS18585 -2.1 -1.5 adenylosuccinate synthase compare
DDA3937_RS22435 -2.1 -1.6 AlpA family transcriptional regulator compare
DDA3937_RS06075 -2.1 -3.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DDA3937_RS04960 -2.1 -2.8 thymidylate synthase compare
DDA3937_RS12525 -2.1 -6.7 orotidine-5'-phosphate decarboxylase compare
DDA3937_RS15655 -2.0 -13.4 phosphoribosylformylglycinamidine synthase compare
DDA3937_RS18480 -2.0 -5.3 phosphoglycerate dehydrogenase compare
DDA3937_RS06770 -2.0 -2.0 oligosaccharide flippase family protein compare
DDA3937_RS21375 -2.0 -4.9 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
DDA3937_RS10950 -2.0 -5.8 fumarate/nitrate reduction transcriptional regulator Fnr compare
DDA3937_RS20455 -1.9 -3.1 putative lipopolysaccharide heptosyltransferase III compare
DDA3937_RS17155 -1.9 -8.7 translocation/assembly module TamB compare
DDA3937_RS14435 -1.8 -13.4 amidophosphoribosyltransferase compare
DDA3937_RS02425 -1.8 -5.4 phosphoserine phosphatase compare
DDA3937_RS03420 -1.8 -4.0 sugar transferase compare
DDA3937_RS19930 -1.8 -3.5 uroporphyrinogen-III C-methyltransferase compare
DDA3937_RS17160 -1.8 -8.8 outer membrane protein assembly factor compare
DDA3937_RS14385 -1.8 -6.2 phosphate acetyltransferase compare
DDA3937_RS08885 -1.8 -3.4 hypothetical protein compare
DDA3937_RS06295 -1.8 -8.1 asparagine synthase B compare
DDA3937_RS09575 -1.7 -1.0 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
DDA3937_RS03285 -1.7 -1.5 protein YgfX compare
DDA3937_RS18305 -1.7 -11.7 carbamoyl-phosphate synthase large subunit compare
DDA3937_RS09670 -1.7 -6.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
DDA3937_RS19015 -1.7 -7.3 glucose-6-phosphate isomerase compare
DDA3937_RS14475 -1.7 -5.0 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS01530 -1.7 -3.5 RNA polymerase factor sigma-54 compare
DDA3937_RS13205 -1.7 -3.8 LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee compare
DDA3937_RS01220 -1.7 -9.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DDA3937_RS18120 -1.7 -5.4 3-isopropylmalate dehydrogenase compare
DDA3937_RS12575 -1.6 -1.7 pyridoxamine 5'-phosphate oxidase compare
DDA3937_RS08130 -1.6 -1.8 malonate decarboxylase subunit epsilon compare
DDA3937_RS05640 -1.6 -7.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
DDA3937_RS09655 -1.6 -11.8 formate C-acetyltransferase compare
DDA3937_RS19000 -1.6 -1.7 EF-P beta-lysylation protein EpmB compare
DDA3937_RS06610 -1.6 -6.1 galactose-1-phosphate uridylyltransferase compare
DDA3937_RS04130 -1.6 -1.3 hypothetical protein compare
DDA3937_RS14630 -1.6 -3.0 tRNA-Arg compare
DDA3937_RS11210 -1.6 -3.4 septum site-determining protein MinD compare
DDA3937_RS04480 -1.5 -5.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DDA3937_RS10325 -1.5 -6.1 formyltetrahydrofolate deformylase compare
DDA3937_RS17135 -1.5 -2.0 glycerol-3-phosphate 1-O-acyltransferase PlsY compare
DDA3937_RS13110 -1.5 -5.8 beta-ketoacyl-ACP synthase II compare
DDA3937_RS00975 -1.5 -1.4 Si-specific NAD(P)(+) transhydrogenase compare
DDA3937_RS08565 -1.5 -2.4 GTP 3',8-cyclase MoaA compare
DDA3937_RS21310 -1.5 -3.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
DDA3937_RS03465 -1.5 -8.6 Na+/H+ antiporter compare
DDA3937_RS19935 -1.5 -3.8 protoheme IX biogenesis protein HemY compare
DDA3937_RS19880 -1.5 -4.9 DNA helicase II compare
DDA3937_RS13215 -1.5 -3.7 glucans biosynthesis glucosyltransferase MdoH compare
DDA3937_RS02915 -1.5 -4.3 TetR/AcrR family transcriptional regulator compare
DDA3937_RS00560 -1.5 -6.4 insulinase family protein compare
DDA3937_RS06685 -1.5 -2.7 iron-sulfur cluster carrier protein ApbC compare
DDA3937_RS20535 -1.5 -7.4 orotate phosphoribosyltransferase compare
DDA3937_RS06535 -1.5 -1.3 tRNA-Lys compare
DDA3937_RS20415 -1.4 -2.0 rhodanese-like domain-containing protein compare
DDA3937_RS12900 -1.4 -12.0 porin compare
DDA3937_RS13515 -1.4 -6.6 protein phosphatase CheZ compare
DDA3937_RS19670 -1.4 -3.2 DeoR/GlpR family transcriptional regulator compare
DDA3937_RS17835 -1.4 -4.5 D-threonate 4-phosphate dehydrogenase compare
DDA3937_RS12855 -1.4 -4.8 quinone-dependent dihydroorotate dehydrogenase compare
DDA3937_RS00580 -1.4 -7.5 2-dehydro-3-deoxygluconokinase compare
DDA3937_RS19620 -1.4 -2.5 two-component system response regulator OmpR compare
DDA3937_RS18125 -1.4 -5.1 3-isopropylmalate dehydratase large subunit compare
DDA3937_RS18310 -1.4 -8.0 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DDA3937_RS19910 -1.4 -2.2 iron donor protein CyaY compare
DDA3937_RS02790 -1.4 -1.4 YqjK-like family protein compare
DDA3937_RS14440 -1.4 -7.0 colicin V production protein compare
DDA3937_RS03280 -1.4 -1.9 FAD assembly factor SdhE compare
DDA3937_RS22235 -1.4 -3.8 immunity 8 family protein compare
DDA3937_RS01550 -1.4 -4.5 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DDA3937_RS12445 -1.4 -1.5 peptide ABC transporter permease SapB compare
DDA3937_RS01250 -1.3 -1.0 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
DDA3937_RS13170 -1.3 -4.8 dihydroorotase compare
DDA3937_RS16565 -1.3 -2.2 hypothetical protein compare
DDA3937_RS09195 -1.3 -3.0 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
DDA3937_RS22485 -1.3 -2.4 hypothetical protein compare
DDA3937_RS14670 -1.3 -4.7 iron-enterobactin ABC transporter permease compare
DDA3937_RS00135 -1.3 -0.9 glutamate--ammonia ligase compare
DDA3937_RS06350 -1.3 -2.5 replication initiation negative regulator SeqA compare
DDA3937_RS21120 -1.2 -1.5 putative FMN-dependent luciferase-like monooxygenase compare
DDA3937_RS11875 -1.2 -3.7 AAA family ATPase compare
DDA3937_RS05645 -1.2 -5.6 ATP-dependent protease ATP-binding subunit ClpX compare
DDA3937_RS15910 -1.2 -1.2 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
DDA3937_RS20970 -1.2 -3.9 mannitol operon repressor compare
DDA3937_RS00100 -1.2 -8.1 thiol:disulfide interchange protein DsbA compare
DDA3937_RS14695 -1.2 -5.0 enterochelin esterase compare
DDA3937_RS20660 -1.2 -2.1 helix-turn-helix transcriptional regulator compare
DDA3937_RS01215 -1.2 -3.9 phosphoribosylamine--glycine ligase compare
DDA3937_RS13220 -1.2 -2.8 glucan biosynthesis protein G compare
DDA3937_RS11770 -1.2 -2.1 amino acid ABC transporter ATP-binding protein compare
DDA3937_RS14655 -1.2 -3.8 Fe2+-enterobactin ABC transporter substrate-binding protein compare
DDA3937_RS12800 -1.2 -2.9 AI-2E family transporter YdiK compare
DDA3937_RS06695 -1.2 -2.6 dCTP deaminase compare
DDA3937_RS09650 -1.2 -6.3 pyruvate formate lyase 1-activating protein compare
DDA3937_RS19785 -1.2 -1.9 gluconate operon transcriptional repressor GntR compare
DDA3937_RS16110 -1.2 -7.2 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DDA3937_RS03100 -1.2 -1.7 DEAD/DEAH family ATP-dependent RNA helicase compare
DDA3937_RS06805 -1.1 -5.4 NADP-dependent phosphogluconate dehydrogenase compare
DDA3937_RS11715 -1.1 -1.8 hypothetical protein compare
DDA3937_RS17830 -1.1 -1.1 DeoR/GlpR transcriptional regulator compare
DDA3937_RS01410 -1.1 -3.2 protein-methionine-sulfoxide reductase heme-binding subunit MsrQ compare
DDA3937_RS13530 -1.1 -6.0 protein-glutamate O-methyltransferase CheR compare
DDA3937_RS09590 -1.1 -3.7 leucine-responsive transcriptional regulator Lrp compare
DDA3937_RS18405 -1.1 -7.0 threonine synthase compare
DDA3937_RS15110 -1.1 -4.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
DDA3937_RS06755 -1.1 -3.3 glycosyltransferase family 2 protein compare
DDA3937_RS13525 -1.1 -5.7 chemotaxis response regulator protein-glutamate methylesterase compare
DDA3937_RS17425 -1.1 -5.4 diaminopimelate decarboxylase compare
DDA3937_RS06765 -1.1 -2.2 DUF616 domain-containing protein compare
DDA3937_RS10405 -1.1 -1.9 cardiolipin synthase compare
DDA3937_RS09115 -1.1 -4.2 DUF3413 domain-containing protein compare
DDA3937_RS09120 -1.1 -1.1 YejL family protein compare
DDA3937_RS14700 -1.1 -8.2 TonB-dependent siderophore receptor compare
DDA3937_RS04945 -1.1 -4.9 RNA pyrophosphohydrolase compare
DDA3937_RS18425 -1.1 -5.2 two-component system response regulator ArcA compare
DDA3937_RS20305 -1.1 -3.7 Sec-independent protein translocase subunit TatC compare
DDA3937_RS01810 -1.1 -5.5 DedA family protein compare
DDA3937_RS14665 -1.1 -4.3 Fe(3+)-siderophore ABC transporter permease compare
DDA3937_RS11035 -1.1 -3.0 redox-regulated ATPase YchF compare
DDA3937_RS02170 -1.1 -2.5 D-threitol dehydrogenase compare
DDA3937_RS11090 -1.1 -2.7 CesT family type III secretion system chaperone compare
DDA3937_RS15815 -1.1 -0.8 tRNA-Val compare
DDA3937_RS11445 -1.1 -4.5 DNA-binding transcriptional regulator KdgR compare
DDA3937_RS00140 -1.0 -4.7 ribosome-dependent GTPase TypA compare
DDA3937_RS17015 -1.0 -8.2 GTP diphosphokinase compare
DDA3937_RS03180 -1.0 -2.8 ribosomal protein S18-alanine N-acetyltransferase compare
DDA3937_RS23085 -1.0 -3.4 hypothetical protein compare
DDA3937_RS18690 -1.0 -3.5 glycosyltransferase compare
DDA3937_RS15750 -1.0 -1.9 SoxR-reducing system protein RseC compare
DDA3937_RS11330 -1.0 -4.4 5-dehydro-4-deoxy-D-glucuronate isomerase compare
DDA3937_RS22080 -1.0 -1.0 transposase compare
DDA3937_RS18085 -1.0 -3.4 division/cell wall cluster transcriptional repressor MraZ compare
DDA3937_RS06155 -1.0 -6.8 D-alanyl-D-alanine carboxypeptidase DacA compare
DDA3937_RS15150 -1.0 -4.6 polyphosphate kinase 1 compare
DDA3937_RS08100 -1.0 -1.4 triphosphoribosyl-dephospho-CoA synthase compare
DDA3937_RS05160 -1.0 -1.2 molecular chaperone Skp compare
DDA3937_RS04820 -1.0 -2.1 integrase compare
DDA3937_RS11275 -1.0 -5.8 TerC family protein compare
DDA3937_RS11205 -1.0 -5.2 septum site-determining protein MinC compare
DDA3937_RS16840 -1.0 -1.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
DDA3937_RS04490 -0.9 -2.0 cysteine synthase A compare
DDA3937_RS05615 -0.9 -1.3 cytochrome o ubiquinol oxidase subunit II compare
DDA3937_RS13965 -0.9 -1.9 CcdB family protein compare
DDA3937_RS05105 -0.9 -2.3 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
DDA3937_RS14920 -0.9 -3.6 sugar ABC transporter permease compare
DDA3937_RS13345 -0.9 -3.3 flagellar filament capping protein FliD compare
DDA3937_RS05500 -0.9 -4.1 transcriptional regulator NrdR compare
DDA3937_RS16065 -0.9 -2.6 murein transglycosylase D compare
DDA3937_RS00910 -0.9 -5.3 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
DDA3937_RS23250 -0.9 -5.0 endolytic transglycosylase MltG compare
DDA3937_RS04310 -0.9 -1.3 type II toxin-antitoxin system RatA family toxin compare
DDA3937_RS05470 -0.9 -2.1 tRNA guanosine(34) transglycosylase Tgt compare
DDA3937_RS13060 -0.9 -1.5 penicillin-binding protein activator LpoB compare
DDA3937_RS18115 -0.9 -3.1 2-isopropylmalate synthase compare
DDA3937_RS14675 -0.9 -1.6 ABC transporter ATP-binding protein compare
DDA3937_RS12590 -0.9 -3.3 glycine zipper 2TM domain-containing protein compare
DDA3937_RS03785 -0.9 -4.0 DoxX family protein compare
DDA3937_RS06145 -0.9 -1.3 lipoyl(octanoyl) transferase LipB compare
DDA3937_RS15645 -0.9 -4.0 two-component system QseEF-associated lipoprotein QseG compare
DDA3937_RS11440 -0.9 -2.4 YebO family protein compare
DDA3937_RS07750 -0.9 -2.1 iron-siderophore ABC transporter substrate-binding protein compare
DDA3937_RS01455 -0.9 -3.7 AsmA2 domain-containing protein YhdP compare
DDA3937_RS08735 -0.9 -4.2 D-alanyl-D-alanine endopeptidase compare
DDA3937_RS04940 -0.9 -2.4 DNA mismatch repair endonuclease MutH compare
DDA3937_RS08440 -0.9 -2.9 DUF3168 domain-containing protein compare
DDA3937_RS03450 -0.9 -2.8 TOBE domain-containing protein compare
DDA3937_RS12450 -0.9 -1.7 peptide ABC transporter permease SapC compare
DDA3937_RS00915 -0.9 -2.9 HslU--HslV peptidase ATPase subunit compare
DDA3937_RS15305 -0.8 -1.3 TIM barrel protein compare
DDA3937_RS09550 -0.8 -2.2 cold shock-like protein CspD compare
DDA3937_RS06235 -0.8 -2.4 CNNM family magnesium/cobalt transport protein CorC compare
DDA3937_RS03585 -0.8 -2.8 GNAT family N-acetyltransferase compare
DDA3937_RS13275 -0.8 -4.1 RpiB/LacA/LacB family sugar-phosphate isomerase compare
DDA3937_RS05660 -0.8 -4.9 peptidylprolyl isomerase compare
DDA3937_RS10575 -0.8 -2.5 electron transport complex subunit RsxA compare
DDA3937_RS12350 -0.8 -1.4 thiol peroxidase compare


Specific Phenotypes

None in this experiment

For Dickeya dadantii 3937 in plant experiments

For plant cv.Upstate across organisms