Experiment setATCH162 for Dickeya dadantii 3937

Compare to:

Upstate

200 most important genes:

  gene name fitness t score description  
DDA3937_RS18130 -5.3 -3.6 3-isopropylmalate dehydratase small subunit compare
DDA3937_RS10985 -4.3 -3.0 peptide chain release factor N(5)-glutamine methyltransferase compare
DDA3937_RS10140 -4.0 -3.9 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
DDA3937_RS11335 -4.0 -6.1 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
DDA3937_RS19615 -3.6 -4.8 two-component system sensor histidine kinase EnvZ compare
DDA3937_RS00600 -3.5 -1.4 DcrB family lipoprotein compare
DDA3937_RS06615 -3.3 -19.2 UDP-glucose 4-epimerase GalE compare
DDA3937_RS05160 -3.3 -2.7 molecular chaperone Skp compare
DDA3937_RS14380 -3.2 -2.2 acetate kinase compare
DDA3937_RS20415 -3.1 -3.5 rhodanese-like domain-containing protein compare
DDA3937_RS10950 -3.1 -6.6 fumarate/nitrate reduction transcriptional regulator Fnr compare
DDA3937_RS14910 -3.1 -11.2 beta-galactosidase compare
DDA3937_RS18125 -3.1 -12.3 3-isopropylmalate dehydratase large subunit compare
DDA3937_RS02425 -2.9 -6.4 phosphoserine phosphatase compare
DDA3937_RS17830 -2.9 -2.6 DeoR/GlpR transcriptional regulator compare
DDA3937_RS18120 -2.7 -7.6 3-isopropylmalate dehydrogenase compare
DDA3937_RS01820 -2.7 -2.6 tol-pal system-associated acyl-CoA thioesterase compare
DDA3937_RS09670 -2.7 -7.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
DDA3937_RS02160 -2.7 -2.0 transketolase compare
DDA3937_RS06610 -2.6 -7.8 galactose-1-phosphate uridylyltransferase compare
DDA3937_RS14675 -2.6 -2.5 ABC transporter ATP-binding protein compare
DDA3937_RS18980 -2.5 -4.7 fumarate reductase subunit FrdD compare
DDA3937_RS00640 -2.5 -2.4 cell division ATP-binding protein FtsE compare
DDA3937_RS18480 -2.4 -6.2 phosphoglycerate dehydrogenase compare
DDA3937_RS16935 -2.4 -2.9 phosphoadenylyl-sulfate reductase compare
DDA3937_RS18275 -2.4 -8.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
DDA3937_RS23045 -2.4 -1.6 stress response protein AzuC compare
DDA3937_RS03420 -2.4 -4.1 sugar transferase compare
DDA3937_RS14385 -2.4 -6.9 phosphate acetyltransferase compare
DDA3937_RS19015 -2.3 -8.4 glucose-6-phosphate isomerase compare
DDA3937_RS12350 -2.3 -3.1 thiol peroxidase compare
DDA3937_RS02965 -2.3 -2.2 transcriptional regulator ArgR compare
DDA3937_RS15420 -2.3 -5.5 IMP dehydrogenase compare
DDA3937_RS18585 -2.2 -1.8 adenylosuccinate synthase compare
DDA3937_RS05150 -2.2 -4.6 sigma E protease regulator RseP compare
DDA3937_RS06605 -2.2 -7.2 galactokinase compare
DDA3937_RS15765 -2.2 -12.9 RNA polymerase sigma factor RpoE compare
DDA3937_RS22270 -2.1 -2.4 type I addiction module toxin, SymE family compare
DDA3937_RS15655 -2.1 -14.7 phosphoribosylformylglycinamidine synthase compare
DDA3937_RS20455 -2.1 -2.9 putative lipopolysaccharide heptosyltransferase III compare
DDA3937_RS06295 -2.1 -8.6 asparagine synthase B compare
DDA3937_RS00910 -2.1 -8.7 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
DDA3937_RS00135 -2.1 -1.4 glutamate--ammonia ligase compare
DDA3937_RS08585 -2.1 -3.1 molybdopterin synthase catalytic subunit MoaE compare
DDA3937_RS17155 -2.1 -9.2 translocation/assembly module TamB compare
DDA3937_RS01600 -2.1 -7.7 outer membrane-stress sensor serine endopeptidase DegS compare
DDA3937_RS01740 -2.1 -3.4 outer membrane channel protein TolC compare
DDA3937_RS10325 -2.0 -9.5 formyltetrahydrofolate deformylase compare
DDA3937_RS09650 -2.0 -8.4 pyruvate formate lyase 1-activating protein compare
DDA3937_RS10465 -2.0 -7.6 tryptophan synthase subunit beta compare
DDA3937_RS09655 -2.0 -11.8 formate C-acetyltransferase compare
DDA3937_RS18405 -2.0 -9.5 threonine synthase compare
DDA3937_RS04490 -2.0 -2.9 cysteine synthase A compare
DDA3937_RS21375 -1.9 -4.1 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
DDA3937_RS14630 -1.9 -2.6 tRNA-Arg compare
DDA3937_RS15245 -1.9 -2.5 porin OmpA compare
DDA3937_RS14670 -1.9 -6.6 iron-enterobactin ABC transporter permease compare
DDA3937_RS00580 -1.9 -8.7 2-dehydro-3-deoxygluconokinase compare
DDA3937_RS11715 -1.9 -3.1 hypothetical protein compare
DDA3937_RS12445 -1.9 -2.1 peptide ABC transporter permease SapB compare
DDA3937_RS05645 -1.9 -10.1 ATP-dependent protease ATP-binding subunit ClpX compare
DDA3937_RS10675 -1.8 -2.0 ROK family transcriptional regulator compare
DDA3937_RS15910 -1.8 -1.9 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
DDA3937_RS06075 -1.8 -3.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
DDA3937_RS12855 -1.8 -4.0 quinone-dependent dihydroorotate dehydrogenase compare
DDA3937_RS04915 -1.8 -2.9 DUF2884 domain-containing protein compare
DDA3937_RS05470 -1.8 -2.4 tRNA guanosine(34) transglycosylase Tgt compare
DDA3937_RS08400 -1.8 -1.5 H-NS histone family protein compare
DDA3937_RS17160 -1.8 -7.7 outer membrane protein assembly factor compare
DDA3937_RS17835 -1.8 -6.0 D-threonate 4-phosphate dehydrogenase compare
DDA3937_RS13345 -1.7 -6.2 flagellar filament capping protein FliD compare
DDA3937_RS14695 -1.7 -6.5 enterochelin esterase compare
DDA3937_RS04125 -1.7 -3.6 acetyltransferase compare
DDA3937_RS01695 -1.7 -3.0 divisome-associated lipoprotein YraP compare
DDA3937_RS17135 -1.7 -2.2 glycerol-3-phosphate 1-O-acyltransferase PlsY compare
DDA3937_RS17015 -1.7 -12.8 GTP diphosphokinase compare
DDA3937_RS18080 -1.7 -1.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
DDA3937_RS11445 -1.7 -6.1 DNA-binding transcriptional regulator KdgR compare
DDA3937_RS11035 -1.6 -3.5 redox-regulated ATPase YchF compare
DDA3937_RS06235 -1.6 -5.3 CNNM family magnesium/cobalt transport protein CorC compare
DDA3937_RS13170 -1.6 -5.6 dihydroorotase compare
DDA3937_RS13515 -1.6 -5.8 protein phosphatase CheZ compare
DDA3937_RS10460 -1.6 -6.8 tryptophan synthase subunit alpha compare
DDA3937_RS18115 -1.6 -7.8 2-isopropylmalate synthase compare
DDA3937_RS14435 -1.6 -11.9 amidophosphoribosyltransferase compare
DDA3937_RS19510 -1.6 -1.8 peptidylprolyl isomerase A compare
DDA3937_RS13525 -1.6 -6.9 chemotaxis response regulator protein-glutamate methylesterase compare
DDA3937_RS03465 -1.6 -7.4 Na+/H+ antiporter compare
DDA3937_RS22035 -1.6 -1.8 immunity protein RhsIC compare
DDA3937_RS02725 -1.6 -1.6 FxsA family protein compare
DDA3937_RS12525 -1.6 -4.8 orotidine-5'-phosphate decarboxylase compare
DDA3937_RS07175 -1.6 -1.9 LysR family transcriptional regulator compare
DDA3937_RS02915 -1.6 -3.6 TetR/AcrR family transcriptional regulator compare
DDA3937_RS12430 -1.6 -2.9 phage shock protein operon transcriptional activator compare
DDA3937_RS21990 -1.5 -2.0 hypothetical protein compare
DDA3937_RS10435 -1.5 -1.5 septation protein A compare
DDA3937_RS06350 -1.5 -3.7 replication initiation negative regulator SeqA compare
DDA3937_RS15485 -1.5 -4.7 nucleoside-diphosphate kinase compare
DDA3937_RS07930 -1.5 -1.8 TonB family protein compare
DDA3937_RS10480 -1.5 -1.8 glutamine amidotransferase compare
DDA3937_RS11275 -1.5 -6.8 TerC family protein compare
DDA3937_RS10315 -1.5 -2.4 trimeric intracellular cation channel family protein compare
DDA3937_RS14475 -1.5 -4.1 4-phosphoerythronate dehydrogenase PdxB compare
DDA3937_RS18415 -1.5 -7.5 bifunctional aspartate kinase/homoserine dehydrogenase I compare
DDA3937_RS19915 -1.5 -1.2 class I adenylate cyclase compare
DDA3937_RS06770 -1.5 -1.9 oligosaccharide flippase family protein compare
DDA3937_RS20130 -1.5 -7.0 ketol-acid reductoisomerase compare
DDA3937_RS02210 -1.5 -4.9 type-1Ba cytolytic delta-endotoxin compare
DDA3937_RS01550 -1.4 -3.9 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
DDA3937_RS20265 -1.4 -0.8 YeeE/YedE family protein compare
DDA3937_RS09195 -1.4 -2.4 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
DDA3937_RS20470 -1.4 -6.4 glycosyltransferase family 9 protein compare
DDA3937_RS13110 -1.4 -4.6 beta-ketoacyl-ACP synthase II compare
DDA3937_RS09370 -1.4 -1.2 GTP cyclohydrolase I FolE compare
DDA3937_RS16555 -1.4 -5.8 esterase FrsA compare
DDA3937_RS18305 -1.4 -7.2 carbamoyl-phosphate synthase large subunit compare
DDA3937_RS00645 -1.4 -5.4 cell division protein FtsX compare
DDA3937_RS18965 -1.3 -5.9 fumarate reductase (quinol) flavoprotein subunit compare
DDA3937_RS11330 -1.3 -4.8 5-dehydro-4-deoxy-D-glucuronate isomerase compare
DDA3937_RS12575 -1.3 -1.8 pyridoxamine 5'-phosphate oxidase compare
DDA3937_RS23075 -1.3 -2.7 hypothetical protein compare
DDA3937_RS10485 -1.3 -6.9 anthranilate synthase component 1 compare
DDA3937_RS01455 -1.3 -5.5 AsmA2 domain-containing protein YhdP compare
DDA3937_RS07760 -1.3 -2.5 iron ABC transporter permease compare
DDA3937_RS20535 -1.3 -6.7 orotate phosphoribosyltransferase compare
DDA3937_RS16095 -1.3 -2.9 16S ribosomal RNA compare
DDA3937_RS10470 -1.3 -4.9 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
DDA3937_RS22175 -1.3 -1.5 IS3 family transposase compare
DDA3937_RS06695 -1.3 -4.2 dCTP deaminase compare
DDA3937_RS19880 -1.3 -5.2 DNA helicase II compare
DDA3937_RS17265 -1.3 -3.7 nitric oxide-sensing transcriptional repressor NsrR compare
DDA3937_RS10475 -1.3 -4.3 anthranilate phosphoribosyltransferase compare
DDA3937_RS04130 -1.3 -1.2 hypothetical protein compare
DDA3937_RS06475 -1.3 -2.0 succinate--CoA ligase subunit alpha compare
DDA3937_RS05635 -1.3 -4.9 trigger factor compare
DDA3937_RS00560 -1.3 -5.5 insulinase family protein compare
DDA3937_RS23400 -1.2 -1.8 hypothetical protein compare
DDA3937_RS05050 -1.2 -3.3 transcriptional regulator GcvA compare
DDA3937_RS20955 -1.2 -5.4 formate dehydrogenase accessory sulfurtransferase FdhD conserved
DDA3937_RS06805 -1.2 -7.3 NADP-dependent phosphogluconate dehydrogenase compare
DDA3937_RS03020 -1.2 -1.8 ribosome assembly RNA-binding protein YhbY compare
DDA3937_RS17425 -1.2 -7.0 diaminopimelate decarboxylase compare
DDA3937_RS05640 -1.2 -5.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
DDA3937_RS16085 -1.2 -2.5 23S ribosomal RNA compare
DDA3937_RS15815 -1.2 -1.1 tRNA-Val compare
DDA3937_RS04480 -1.2 -4.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
DDA3937_RS10405 -1.2 -1.8 cardiolipin synthase compare
DDA3937_RS13215 -1.2 -2.9 glucans biosynthesis glucosyltransferase MdoH compare
DDA3937_RS04195 -1.2 -4.2 GPO family capsid scaffolding protein compare
DDA3937_RS04895 -1.2 -2.9 oxidative damage protection protein compare
DDA3937_RS23495 -1.2 -2.2 hypothetical protein compare
DDA3937_RS10965 -1.2 -4.2 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha compare
DDA3937_RS18410 -1.2 -4.6 homoserine kinase compare
DDA3937_RS18310 -1.2 -6.4 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
DDA3937_RS08565 -1.2 -1.9 GTP 3',8-cyclase MoaA compare
DDA3937_RS18890 -1.2 -1.5 hypothetical protein compare
DDA3937_RS06025 -1.2 -4.8 phosphoribosylformylglycinamidine cyclo-ligase compare
DDA3937_RS20155 -1.2 -7.1 dihydroxy-acid dehydratase compare
DDA3937_RS15780 -1.2 -4.2 ATP-dependent RNA helicase SrmB compare
DDA3937_RS20970 -1.2 -2.9 mannitol operon repressor compare
DDA3937_RS22235 -1.2 -3.0 immunity 8 family protein compare
DDA3937_RS21965 -1.2 -1.0 helix-turn-helix domain-containing protein compare
DDA3937_RS01870 -1.2 -3.7 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
DDA3937_RS00125 -1.1 -1.5 nitrogen regulation protein NR(I) compare
DDA3937_RS16065 -1.1 -2.9 murein transglycosylase D compare
DDA3937_RS22125 -1.1 -1.6 conjugal transfer protein TrbI compare
DDA3937_RS13060 -1.1 -1.9 penicillin-binding protein activator LpoB compare
DDA3937_RS00345 -1.1 -4.6 inorganic phosphate transporter PitA compare
DDA3937_RS03120 -1.1 -2.9 SCP2 domain-containing protein compare
DDA3937_RS04945 -1.1 -4.7 RNA pyrophosphohydrolase compare
DDA3937_RS00875 -1.1 -2.5 DUF805 domain-containing protein compare
DDA3937_RS00625 -1.1 -2.6 DUF1145 family protein compare
DDA3937_RS02835 -1.1 -4.7 altronate dehydratase compare
DDA3937_RS22435 -1.1 -1.5 AlpA family transcriptional regulator compare
DDA3937_RS13540 -1.1 -5.4 chemotaxis protein CheW compare
DDA3937_RS18575 -1.1 -6.2 class 1 fructose-bisphosphatase compare
DDA3937_RS18385 -1.1 -3.2 molybdopterin adenylyltransferase compare
DDA3937_RS14575 -1.1 -2.5 penicillin-insensitive murein endopeptidase compare
DDA3937_RS09115 -1.1 -4.0 DUF3413 domain-containing protein compare
DDA3937_RS20700 -1.1 -1.2 hypothetical protein compare
DDA3937_RS16755 -1.1 -4.7 transcriptional repressor MprA compare
DDA3937_RS09585 -1.1 -1.4 thioredoxin-disulfide reductase compare
DDA3937_RS13220 -1.1 -3.0 glucan biosynthesis protein G compare
DDA3937_RS00140 -1.1 -4.0 ribosome-dependent GTPase TypA compare
DDA3937_RS13350 -1.1 -2.8 flagellar export chaperone FliS compare
DDA3937_RS18430 -1.1 -2.9 protein CreA compare
DDA3937_RS10125 -1.1 -2.5 pyruvate kinase compare
DDA3937_RS16110 -1.1 -6.0 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
DDA3937_RS01220 -1.1 -5.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
DDA3937_RS11615 -1.1 -1.3 type III secretion system stator protein SctL compare
DDA3937_RS19670 -1.1 -1.8 DeoR/GlpR family transcriptional regulator compare
DDA3937_RS22485 -1.1 -1.9 hypothetical protein compare
DDA3937_RS10500 -1.1 -3.6 23S rRNA pseudouridine(2605) synthase RluB compare
DDA3937_RS15150 -1.1 -4.9 polyphosphate kinase 1 compare
DDA3937_RS21230 -1.1 -3.4 GntR family transcriptional regulator compare
DDA3937_RS14665 -1.0 -3.7 Fe(3+)-siderophore ABC transporter permease compare
DDA3937_RS15530 -1.0 -1.5 co-chaperone HscB compare
DDA3937_RS12425 -1.0 -1.2 phage shock protein PspA compare
DDA3937_RS16650 -1.0 -1.4 amino acid ABC transporter permease compare
DDA3937_RS17300 -1.0 -3.9 YggS family pyridoxal phosphate-dependent enzyme compare


Specific Phenotypes

For 2 genes in this experiment

For plant cv.Upstate in Dickeya dadantii 3937

For plant cv.Upstate across organisms